Os04g0683900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HMG-I and HMG-Y, DNA-binding domain containing protein.
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Os04g0683900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HMG-I and HMG-Y, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.2 | 0.236 | 14.1 | 0.148 | 1.12 | -1.39 | -0.237 | 0.48 | -0.015 | 19.6 | 9.534 | 15 | -- | -- |
| 25.39 | 0.235 | 14.2 | 0.0808 | 1.13 | -1.39 | -0.257 | -- | -0.0342 | 19.7 | 8.333 | 26 | -- | -- |
| 25.36 | 0.235 | 14.1 | 0.161 | 1.12 | -1.4 | -- | 0.519 | -0.0104 | 19.7 | 8.818 | 18 | -- | -- |
| 25.57 | 0.236 | 14.2 | 0.0898 | 1.13 | -1.4 | -- | -- | -0.033 | 19.7 | 8.035 | 26 | -- | -- |
| 90.59 | 0.446 | 14.1 | 0.163 | -- | -1.3 | -- | 0.853 | -0.035 | -- | 11.13 | 9 | -- | -- |
| 43.68 | 0.31 | 14.2 | -0.194 | 1.11 | -- | -0.276 | -- | -0.23 | 21 | -- | -- | -- | -- |
| 43.94 | 0.31 | 14.2 | -0.184 | 1.11 | -- | -- | -- | -0.23 | 21 | -- | -- | -- | -- |
| 91.2 | 0.447 | 14.1 | 0.0469 | -- | -1.28 | -- | -- | -0.0672 | -- | 11.13 | 9 | -- | -- |
| 25.76 | 0.236 | 14.2 | -- | 1.13 | -1.35 | -- | -- | -0.0483 | 19.7 | 7.382 | 26 | -- | -- |
| 114.59 | 0.5 | 14.2 | -0.183 | -- | -- | -- | -- | -0.237 | -- | -- | -- | -- | -- |
| 44.84 | 0.313 | 14.2 | -- | 1.11 | -- | -- | -- | -0.209 | 21 | -- | -- | -- | -- |
| 91.19 | 0.445 | 14.1 | -- | -- | -1.26 | -- | -- | -0.0729 | -- | 14.15 | 2 | -- | -- |
| 115.47 | 0.502 | 14.2 | -- | -- | -- | -- | -- | -0.216 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.68 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 5 | 24.50 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 21 |
| 6 | 24.52 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 8 | 24.72 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 9 | 24.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 12 | 24.90 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 17 | 25.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 19 | 25.22 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 22 | 25.24 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 27 | 25.31 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 35 | 25.39 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 39 | 25.47 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 44 | 25.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 56 | 25.73 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 20 |
| 75 | 25.94 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 84 | 26.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 92 | 26.10 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 103 | 26.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 3 |
| 104 | 26.28 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 3 |
| 107 | 26.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 128 | 26.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 130 | 26.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 131 | 26.38 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 135 | 26.39 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 163 | 26.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 195 | 26.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 16 |
| 258 | 26.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 289 | 26.80 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 301 | 26.82 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 333 | 26.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 358 | 26.89 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 531 | 27.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 643 | 27.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 664 | 27.16 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 675 | 27.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 690 | 27.19 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 803 | 27.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 804 | 27.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 910 | 27.32 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |