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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0235200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF296 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.91 (0.0351) R2 : 0.475
β1 : 1.34 (0.13) R2dD : 0.136 R2D : 0.0783
β2 : 1.25 (0.0872) R2dC : 0.243 R2C : 0.264
β3 : 1.47 (0.144) R2dE : 0.142 R2E : 0.104
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.129 (0.0792) R2dN8 : 0.00504 R2N8 : -0.0221
σ : 0.647
deviance : 190.2
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_____
C
peak time of C : 20.2
E
wheather : temperature
threshold : 28.22
memory length : 10
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
187.59 0.644 4.93 1.21 1.26 1.48 0.657 0.921 0.0927 20.2 28.22 10 -- --
188.23 0.644 4.91 1.36 1.25 1.45 0.803 -- 0.124 20.3 28.22 10 -- --
188.06 0.644 4.93 1.15 1.26 1.5 -- 1.16 0.0818 20.2 28.22 10 -- --
190.2 0.647 4.91 1.34 1.25 1.47 -- -- 0.129 20.2 28.22 10 -- --
273.86 0.771 4.89 1.14 -- 1.7 -- 1.41 0.116 -- 26.81 2 -- --
218.07 0.692 4.98 1.02 1.36 -- 0.865 -- -0.178 21.6 -- -- -- --
220.86 0.696 4.98 0.989 1.36 -- -- -- -0.179 21.6 -- -- -- --
276.31 0.778 4.87 1.37 -- 1.63 -- -- 0.148 -- 28.22 10 -- --
233.11 0.715 4.97 -- 1.27 0.927 -- -- -0.119 20.8 28.22 10 -- --
330.2 0.849 4.94 0.999 -- -- -- -- -0.182 -- -- -- -- --
246.63 0.735 5.01 -- 1.36 -- -- -- -0.289 21.6 -- -- -- --
322.73 0.839 4.92 -- -- 1.25 -- -- -0.0714 -- 28.22 10 -- --
356.56 0.881 4.97 -- -- -- -- -- -0.293 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 185.98 temperature 20 1440 > th dose dependent rect. 5 1
2 186.04 temperature 20 1440 > th dose dependent rect. 20 10
25 186.46 temperature 30 10 < th dose dependent rect. 8 23
64 187.31 temperature 10 720 > th dose dependent rect. 11 21
73 187.47 temperature 10 1440 > th dose dependent rect. 20 10
74 187.48 temperature 10 1440 > th dose dependent rect. 20 8
76 187.48 temperature 30 1440 < th dose dependent rect. 20 10
121 187.64 temperature 30 10 < th dose dependent rect. 23 23
154 187.76 temperature 30 10 < th dose dependent rect. 21 23
163 187.83 temperature 20 1440 > th dose dependent sin 11 NA
240 188.20 temperature 30 1440 < th dose dependent rect. 1 2
247 188.22 temperature 10 1440 > th dose dependent rect. 1 1
253 188.25 temperature 30 1440 < th dose dependent sin 12 NA
297 188.40 temperature 10 1440 > th dose dependent sin 11 NA
306 188.42 temperature 30 10 < th dose dependent rect. 11 23
339 188.52 temperature 30 10 < th dose dependent rect. 1 23
346 188.55 temperature 30 10 < th dose dependent no NA NA
384 188.65 temperature 30 10 < th dose dependent rect. 13 23
385 188.65 temperature 30 10 < th dose dependent rect. 15 23
415 188.74 temperature 30 10 < th dose dependent rect. 19 23
466 188.88 temperature 15 10 > th dose dependent rect. 2 23
502 189.00 temperature 10 10 > th dose dependent no NA NA
509 189.01 temperature 30 720 < th dose dependent rect. 23 21
524 189.08 temperature 10 1440 > th dose dependent rect. 5 1
545 189.13 temperature 30 1440 < th dose dependent rect. 5 1
620 189.30 temperature 25 1440 < th dose independent rect. 13 12
653 189.36 temperature 10 720 > th dose dependent rect. 2 22
660 189.37 temperature 20 10 > th dose dependent rect. 5 20
724 189.51 temperature 30 720 < th dose dependent rect. 8 20
772 189.60 temperature 10 720 > th dose dependent rect. 18 22
854 189.73 temperature 25 1440 < th dose independent sin 16 NA
867 189.73 temperature 30 10 < th dose dependent rect. 17 23
958 189.82 temperature 25 1440 > th dose independent rect. 13 12
977 189.84 temperature 25 1440 < th dose independent rect. 19 3
999 189.86 temperature 30 720 < th dose dependent rect. 5 23