BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0235200 Os07g0235200|AK120395
(189 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0235200 Protein of unknown function DUF296 domain cont... 211 2e-55
Os08g0563200 Protein of unknown function DUF296 domain cont... 149 1e-36
Os02g0820800 HMG-I and HMG-Y, DNA-binding domain containing... 104 4e-23
Os02g0713700 Protein of unknown function DUF296 domain cont... 100 9e-22
Os03g0270000 Protein of unknown function DUF296 domain cont... 97 5e-21
Os02g0448000 Protein of unknown function DUF296 domain cont... 94 7e-20
Os06g0136900 Protein of unknown function DUF296 domain cont... 83 1e-16
Os04g0590200 Protein of unknown function DUF296 domain cont... 80 1e-15
Os06g0326900 Protein of unknown function DUF296 domain cont... 77 5e-15
Os06g0623800 64 8e-11
>Os07g0235200 Protein of unknown function DUF296 domain containing protein
Length = 189
Score = 211 bits (538), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/189 (62%), Positives = 119/189 (62%)
Query: 1 VGVGPTCQVXXXXXXXXXXXXXXXXXXXXXXXIAHFARRQRRGICVLSRADAVTDVALRQ 60
VGVGPTCQV IAHFARRQRRGICVLSRADAVTDVALRQ
Sbjct: 1 VGVGPTCQVSTLASLSSLLFLCFSLLFSTLTSIAHFARRQRRGICVLSRADAVTDVALRQ 60
Query: 61 PAAPGAVVALRGRFEIXXXXXXXXXXXXXXXXXRLTVYLAGGQGQVVGTLTAAGPVMVIA 120
PAAPGAVVALRGRFEI RLTVYLAGGQGQVVGTLTAAGPVMVIA
Sbjct: 61 PAAPGAVVALRGRFEILSLTGTFLPGPGPPGSTRLTVYLAGGQGQVVGTLTAAGPVMVIA 120
Query: 121 STFANATYERLPLDQXXXXXXXXXXXXXXXXXXXXXXXXDPVLFGGGMHDAGLATPAWHH 180
STFANATYERLPLDQ DPVLFGGGMHDAGLATPAWHH
Sbjct: 121 STFANATYERLPLDQEEEEAAAGGGGHMMAPPPLMAGAADPVLFGGGMHDAGLATPAWHH 180
Query: 181 ARXXXXXXY 189
AR Y
Sbjct: 181 ARPPPPPPY 189
>Os08g0563200 Protein of unknown function DUF296 domain containing protein
Length = 235
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/162 (58%), Positives = 99/162 (61%), Gaps = 10/162 (6%)
Query: 33 IAHFARRQRRGICVLSRADAVTDVALRQPAAPGAVVALRGRFEIXXXXXXXXXXXXXXXX 92
IAHFARR++RG+CVLS A VTDVALRQPAAP AVVALRGRFEI
Sbjct: 79 IAHFARRRQRGVCVLSGAGTVTDVALRQPAAPSAVVALRGRFEILSLTGTFLPGPAPPGS 138
Query: 93 XRLTVYLA-----GGQGQVVGTLTAAGPVMVIASTFANATYERLPLDQXXXXXXXXXXXX 147
LTVYLA G VVGTLTAAGPVMVIASTFANATYERLPLDQ
Sbjct: 139 TGLTVYLAGGQGQVVGGSVVGTLTAAGPVMVIASTFANATYERLPLDQ---EEEEAAAGG 195
Query: 148 XXXXXXXXXXXXDPVLFGGGMHDAGLATPAWHHARXXXXXXY 189
DP+LFGGGMHDAGLA AWHHAR Y
Sbjct: 196 MMAPPPLMAGAADPLLFGGGMHDAGLA--AWHHARPPPPPPY 235
>Os02g0820800 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 266
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/106 (61%), Positives = 72/106 (67%), Gaps = 5/106 (4%)
Query: 33 IAHFARRQRRGICVLSRADAVTDVALRQPAAPGAVVALRGRFEIXXXXXXXXXXXXXXXX 92
IA F+RR++RG+CVLS A V +VALRQP+APGAVVAL GRFEI
Sbjct: 102 IAQFSRRRQRGVCVLSGAGTVANVALRQPSAPGAVVALHGRFEILSLTGTFLPGPAPPGS 161
Query: 93 XRLTVYLA-----GGQGQVVGTLTAAGPVMVIASTFANATYERLPL 133
LTVYLA G VVG+L AAGPVMVIASTFANATYERLPL
Sbjct: 162 TGLTVYLAGGQGQVVGGSVVGSLIAAGPVMVIASTFANATYERLPL 207
>Os02g0713700 Protein of unknown function DUF296 domain containing protein
Length = 336
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 73/109 (66%), Gaps = 8/109 (7%)
Query: 33 IAHFARRQRRGICVLSRADAVTDVALRQPAA--PGAVVA-LRGRFEIXXXXXXXXXXXXX 89
+A +ARR+ RG+CVLS AV +VALRQP A PG++VA LRGRFEI
Sbjct: 143 VAEYARRRGRGVCVLSGGGAVVNVALRQPGASPPGSMVATLRGRFEILSLTGTVLPPPAP 202
Query: 90 XXXXRLTVYLAGGQGQV-----VGTLTAAGPVMVIASTFANATYERLPL 133
LTV+L+GGQGQV VG L AAGPV+++A++FANA YERLPL
Sbjct: 203 PGASGLTVFLSGGQGQVIGGSVVGPLVAAGPVVLMAASFANAVYERLPL 251
>Os03g0270000 Protein of unknown function DUF296 domain containing protein
Length = 258
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/109 (57%), Positives = 72/109 (66%), Gaps = 6/109 (5%)
Query: 33 IAHFARRQRRGICVLSRADAVTDVALRQPAAPGAV-VALRGRFEIXXXXXXXXXXXXXXX 91
IA F+RR++RG+ VLS + AVT+V LRQPA GA VALRGRFEI
Sbjct: 89 IAGFSRRRQRGVSVLSGSGAVTNVTLRQPAGTGAAAVALRGRFEILSMSGAFLPAPAPPG 148
Query: 92 XXRLTVYLAGGQG-----QVVGTLTAAGPVMVIASTFANATYERLPLDQ 135
L VYLAGGQG V+G L A+GPVMVIA+TF NATYERLPLDQ
Sbjct: 149 ATGLAVYLAGGQGQVVGGSVMGELIASGPVMVIAATFGNATYERLPLDQ 197
>Os02g0448000 Protein of unknown function DUF296 domain containing protein
Length = 316
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/108 (58%), Positives = 74/108 (68%), Gaps = 5/108 (4%)
Query: 33 IAHFARRQRRGICVLSRADAVTDVALRQPAAPGAVVALRGRFEIXXXXXXXXXXXXXXXX 92
I FARR++RG+CVLS A VT+V LRQPA+ GAVVAL GRFEI
Sbjct: 141 ITTFARRRQRGVCVLSGAGTVTNVTLRQPASQGAVVALHGRFEILSLSGSFLPPPAPPEA 200
Query: 93 XRLTVYLAGGQGQVVGT-----LTAAGPVMVIASTFANATYERLPLDQ 135
LTVYLAGGQGQVVG LTAAGPV+++A++FANA YERLPL+
Sbjct: 201 TGLTVYLAGGQGQVVGGSVVGALTAAGPVVIMAASFANAVYERLPLED 248
>Os06g0136900 Protein of unknown function DUF296 domain containing protein
Length = 328
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Query: 33 IAHFARRQRRGICVLSRADAVTDVALRQPAA-PGAVVALRGRFEIXXXXXXXXXXXXXXX 91
+A FARR++ G+CVLS AVT+V++RQP A PGAVV L GRF+I
Sbjct: 155 VATFARRRQVGVCVLSATGAVTNVSVRQPGAGPGAVVNLTGRFDILSLSGSFLPPPAPPS 214
Query: 92 XXRLTVYLAGGQGQ-----VVGTLTAAGPVMVIASTFANATYERLPLD 134
LTVY++GGQGQ V G L A GPV+++A++F NA YERLPL+
Sbjct: 215 ATGLTVYVSGGQGQVVGGTVAGPLIAVGPVVIMAASFGNAAYERLPLE 262
>Os04g0590200 Protein of unknown function DUF296 domain containing protein
Length = 305
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 70/104 (67%), Gaps = 6/104 (5%)
Query: 33 IAHFARRQRRGICVLSRADAVTDVALRQPAAP-GAVVALRGRFEIXXXXXXXXXXXXXXX 91
++ +ARR++RG+CVLS + VT+V LRQP+AP GAVV+L GRFEI
Sbjct: 126 VSTYARRRQRGVCVLSGSGVVTNVTLRQPSAPAGAVVSLHGRFEILSLSGSFLPPPAPPG 185
Query: 92 XXRLTVYLAGGQGQVVG-----TLTAAGPVMVIASTFANATYER 130
LT++LAGGQGQVVG L AAGPV+VIA++FAN YER
Sbjct: 186 ATSLTIFLAGGQGQVVGGNVVGALYAAGPVIVIAASFANVAYER 229
>Os06g0326900 Protein of unknown function DUF296 domain containing protein
Length = 322
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 70/110 (63%), Gaps = 8/110 (7%)
Query: 33 IAHFARRQRRGICVLSRADAVTDVALRQPAA--PGAVVA-LRGRFEIXXXXXXXXXXXXX 89
+ FARR+ RG+ VLS AV +VALRQP A PG++VA +RG+FEI
Sbjct: 127 VCEFARRRGRGVSVLSGGGAVANVALRQPGASPPGSLVATMRGQFEILSLTGTVLPPPAP 186
Query: 90 XXXXRLTVYLAGGQGQV-----VGTLTAAGPVMVIASTFANATYERLPLD 134
LTV+L+GGQGQV G L AAGPV ++A++FANA YERLPLD
Sbjct: 187 PSASGLTVFLSGGQGQVVGGSVAGQLIAAGPVFLMAASFANAVYERLPLD 236
>Os06g0623800
Length = 258
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 61/106 (57%), Gaps = 10/106 (9%)
Query: 33 IAHFARRQRRGICVLSRADAVTDVALRQPAAPGAVVALRGRFEIXXXXXXXXXXXXXXXX 92
+A +ARR+ RG+C++ + AV DVA+R GA L GRFE+
Sbjct: 94 VAEYARRRGRGVCLMGASGAVADVAVR-----GAAAPLPGRFELLSVTGTVLPPPAPPGA 148
Query: 93 XRLTVYLAGGQGQVVGT-----LTAAGPVMVIASTFANATYERLPL 133
L+V L+ GQGQVVG L AAGPV + A+TFANA YERLPL
Sbjct: 149 SGLSVLLSAGQGQVVGGCVVGPLVAAGPVTLFAATFANAVYERLPL 194
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.139 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,177,079
Number of extensions: 99402
Number of successful extensions: 355
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 11
Length of query: 189
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 94
Effective length of database: 12,075,471
Effective search space: 1135094274
Effective search space used: 1135094274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)