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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0326900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF296 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.01 (0.0352) R2 : 0.635
β1 : 2.23 (0.128) R2dD : 0.299 R2D : 0.145
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.81 (0.12) R2dE : 0.534 R2E : 0.268
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.739 (0.081) R2dN8 : 0.124 R2N8 : -0.128
σ : 0.643
deviance : 190.68
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.9787
memory length : 15155
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.5
open length of G : 14.7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
194.18 0.655 4.08 1.18 0.566 -2.76 0.981 -3.03 0.532 22.5 0.9868 10243 15 15.1
202.01 0.662 4.08 2.09 0.568 -2.63 0.766 -- 0.605 22.4 1.051 11746 15.5 15.1
195.54 0.651 4.08 1.22 0.587 -2.79 -- -3.08 0.554 22.5 0.9612 10360 15.7 15.2
199.44 0.658 4.08 2.1 0.582 -2.62 -- -- 0.624 22.4 0.999 14614 15.5 15.1
195.87 0.652 4.06 1.32 -- -2.97 -- -3.05 0.548 -- 0.8445 10805 17.2 15.2
412.22 0.952 4.2 1.88 0.455 -- 0.819 -- 0.0125 22.9 -- -- -- --
414.99 0.954 4.2 1.85 0.45 -- -- -- 0.00898 23.2 -- -- -- --
190.68 0.643 4.01 2.23 -- -2.81 -- -- 0.739 -- 0.9787 15155 17.5 14.7
282.98 0.783 4.07 -- 0.651 -2.65 -- -- 0.444 21.7 2.26 14799 15.5 14.5
427.65 0.966 4.19 1.86 -- -- -- -- 0.0129 -- -- -- -- --
504.9 1.05 4.24 -- 0.469 -- -- -- -0.197 23.4 -- -- -- --
269.24 0.764 4 -- -- -2.9 -- -- 0.415 -- 1.54 15318 17.5 12.2
518.69 1.06 4.23 -- -- -- -- -- -0.193 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 180.54 humidity 60 43200 > th dose independent rect. 15 1
2 180.70 humidity 90 43200 < th dose independent rect. 20 1
3 181.30 humidity 90 43200 < th dose independent rect. 19 4
4 181.94 humidity 90 43200 < th dose independent rect. 22 1
10 182.52 radiation 1 14400 > th dose dependent rect. 18 12
13 182.78 radiation 1 14400 < th dose dependent rect. 5 1
14 182.99 humidity 60 43200 < th dose independent rect. 15 2
20 183.49 radiation 1 14400 < th dose dependent rect. 21 9
22 183.53 radiation 1 14400 < th dose dependent rect. 2 4
25 183.55 radiation 1 14400 < th dose dependent rect. 23 7
32 183.79 humidity 90 43200 < th dose independent rect. 15 9
34 183.86 radiation 1 14400 < th dose dependent rect. 17 18
36 183.91 radiation 1 14400 > th dose dependent rect. 4 2
48 184.01 humidity 90 43200 < th dose independent rect. 5 19
53 184.14 radiation 1 14400 < th dose dependent rect. 5 5
55 184.16 radiation 1 14400 < th dose dependent sin 9 NA
57 184.18 humidity 90 43200 < th dose independent rect. 5 21
75 184.68 humidity 90 43200 < th dose independent rect. 8 16
76 184.68 radiation 1 14400 < th dose dependent rect. 21 13
78 184.70 radiation 1 14400 < th dose dependent rect. 2 8
104 184.90 humidity 90 43200 < th dose independent rect. 11 13
107 185.00 radiation 10 14400 < th dose independent rect. 16 15
174 185.70 radiation 1 14400 < th dose independent rect. 17 19
190 185.79 radiation 1 14400 < th dose independent rect. 17 21
214 186.26 humidity 90 43200 < th dose independent sin 19 NA
238 186.67 humidity 90 43200 > th dose independent rect. 5 21
247 186.78 humidity 90 43200 > th dose independent rect. 22 1
261 187.07 humidity 80 43200 > th dose dependent rect. 17 3
265 187.13 radiation 1 14400 > th dose independent rect. 17 19
267 187.15 radiation 1 14400 < th dose dependent rect. 5 19
269 187.16 radiation 1 14400 < th dose dependent rect. 5 22
272 187.17 radiation 1 14400 < th dose dependent rect. 5 14
273 187.17 radiation 1 14400 < th dose dependent rect. 5 17
276 187.18 humidity 90 43200 > th dose independent rect. 19 4
277 187.18 radiation 1 14400 > th dose independent rect. 17 21
285 187.24 radiation 1 14400 < th dose dependent rect. 7 23
299 187.42 radiation 1 14400 < th dose dependent rect. 2 22
300 187.42 radiation 1 14400 < th dose dependent rect. 21 22
303 187.43 radiation 1 14400 < th dose dependent no NA NA
308 187.44 radiation 1 14400 < th dose dependent rect. 2 17
311 187.44 radiation 1 14400 < th dose dependent rect. 23 20
321 187.44 radiation 1 14400 < th dose dependent rect. 23 23
359 187.73 humidity 90 43200 > th dose independent rect. 5 6
391 188.11 radiation 1 14400 < th dose dependent rect. 17 10
400 188.20 radiation 1 14400 < th dose dependent rect. 17 2
401 188.20 radiation 1 14400 < th dose dependent rect. 17 5
458 188.78 radiation 40 14400 < th dose dependent rect. 18 12
475 188.97 humidity 90 43200 < th dose independent rect. 5 6
479 189.01 radiation 1 14400 < th dose independent sin 11 NA
508 189.19 radiation 40 14400 < th dose dependent rect. 2 4
512 189.20 radiation 30 14400 < th dose dependent rect. 4 2
531 189.28 radiation 40 14400 < th dose dependent rect. 20 10
543 189.34 humidity 90 43200 < th dose independent rect. 15 23
569 189.50 radiation 1 14400 < th dose independent rect. 5 14
571 189.50 radiation 1 14400 < th dose independent rect. 5 17
572 189.50 radiation 1 14400 < th dose independent rect. 5 19
574 189.50 radiation 1 14400 < th dose independent rect. 5 22
576 189.50 humidity 90 43200 > th dose dependent rect. 8 1
593 189.61 radiation 1 14400 < th dose independent rect. 5 9
600 189.69 radiation 1 14400 > th dose independent rect. 5 9
601 189.69 radiation 1 14400 < th dose independent rect. 13 22
602 189.70 radiation 1 14400 < th dose independent rect. 7 23
609 189.76 radiation 1 14400 < th dose independent rect. 17 2
610 189.77 radiation 1 14400 < th dose independent rect. 17 5
611 189.77 radiation 1 14400 < th dose independent rect. 17 7
612 189.77 radiation 1 14400 < th dose independent rect. 17 11
634 189.94 radiation 1 14400 < th dose independent rect. 21 22
640 189.95 radiation 1 14400 < th dose independent rect. 2 20
642 189.95 radiation 1 14400 < th dose independent rect. 23 20
650 189.95 radiation 1 14400 < th dose independent rect. 23 23
651 189.96 radiation 1 14400 < th dose independent no NA NA
686 190.01 humidity 90 43200 > th dose dependent rect. 5 6
695 190.08 humidity 90 43200 > th dose dependent rect. 5 19
703 190.19 radiation 1 14400 > th dose independent rect. 17 2
717 190.22 humidity 90 43200 < th dose independent no NA NA
733 190.31 humidity 90 43200 > th dose dependent rect. 21 2
776 190.44 humidity 90 43200 < th dose independent rect. 18 23
793 190.58 radiation 1 14400 > th dose independent sin 11 NA
847 190.74 radiation 1 14400 > th dose independent rect. 7 23
849 190.75 humidity 90 43200 < th dose independent rect. 22 23
854 190.77 radiation 1 14400 > th dose independent rect. 5 14
873 190.85 humidity 90 43200 < th dose independent rect. 11 23
875 190.87 radiation 1 14400 < th dose independent rect. 21 17
876 190.88 humidity 90 43200 > th dose independent sin 3 NA
888 190.88 radiation 1 14400 < th dose independent rect. 2 12
892 190.89 radiation 1 14400 < th dose independent sin 2 NA
896 190.89 radiation 1 14400 < th dose independent rect. 23 15
905 190.94 humidity 90 43200 < th dose independent sin 2 NA
909 190.96 radiation 20 14400 > th dose dependent rect. 16 16
921 191.04 humidity 90 43200 > th dose independent sin 19 NA
927 191.05 humidity 90 43200 > th dose independent rect. 17 20
929 191.05 radiation 1 14400 > th dose independent rect. 13 22
930 191.05 radiation 1 14400 < th dose dependent rect. 7 17
946 191.06 radiation 1 14400 < th dose dependent rect. 7 12
952 191.07 radiation 1 14400 < th dose dependent rect. 7 15