BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0561400 Os10g0561400|AK066961
(234 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0561400 Similar to Transcription factor MYBS3 446 e-126
Os01g0187900 Similar to Transcription factor MYBS2 169 2e-42
AK105558 153 1e-37
Os08g0144000 Zinc finger, CCHC-type domain containing protein 131 4e-31
Os01g0192300 Similar to I-box binding factor (Fragment) 129 1e-30
Os01g0603300 Similar to MCB2 protein 126 1e-29
Os08g0151000 Similar to MCB1 protein 125 3e-29
Os05g0195700 Similar to Transcription factor MYBS2 123 1e-28
Os10g0562100 Homeodomain-like containing protein 123 1e-28
Os01g0524500 Similar to Transcription factor MYBS3 116 1e-26
Os05g0589400 Similar to I-box binding factor (Fragment) 115 4e-26
Os04g0676700 Similar to MCB1 protein 114 4e-26
Os04g0341900 109 2e-24
Os01g0142500 Homeodomain-like containing protein 109 2e-24
Os05g0449900 Homeodomain-like containing protein 107 5e-24
Os01g0853700 Similar to MCB1 protein 105 3e-23
Os05g0442400 Similar to MybSt1 95 5e-20
Os01g0863300 Similar to MCB2 protein 92 4e-19
Os06g0173400 78 7e-15
Os06g0173300 77 8e-15
Os06g0173200 72 2e-13
Os03g0837200 70 1e-12
Os02g0511200 67 1e-11
>Os10g0561400 Similar to Transcription factor MYBS3
Length = 234
Score = 446 bits (1147), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/234 (94%), Positives = 220/234 (94%)
Query: 1 MLFALDEAGVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQS 60
MLFALDEAGVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQS
Sbjct: 1 MLFALDEAGVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQS 60
Query: 61 NMTRRKRRSSLFDMVPDESMDLPPLPGGQEPETQVLNQPALPPPREEEEVDSMEXXXXXX 120
NMTRRKRRSSLFDMVPDESMDLPPLPGGQEPETQVLNQPALPPPREEEEVDSME
Sbjct: 61 NMTRRKRRSSLFDMVPDESMDLPPLPGGQEPETQVLNQPALPPPREEEEVDSMESDTSAV 120
Query: 121 XXXXXXXXIMPDNLQSTYPVIVPAYFSPFLQFSVPFWQNQKDEDGPVQETHEIVKPVPVH 180
IMPDNLQSTYPVIVPAYFSPFLQFSVPFWQNQKDEDGPVQETHEIVKPVPVH
Sbjct: 121 AESSSASAIMPDNLQSTYPVIVPAYFSPFLQFSVPFWQNQKDEDGPVQETHEIVKPVPVH 180
Query: 181 SKSPINVDELVGMSKLSIGESNQETVSTSLSLNLVGGQNRQSAFHANPPTRAQA 234
SKSPINVDELVGMSKLSIGESNQETVSTSLSLNLVGGQNRQSAFHANPPTRAQA
Sbjct: 181 SKSPINVDELVGMSKLSIGESNQETVSTSLSLNLVGGQNRQSAFHANPPTRAQA 234
>Os01g0187900 Similar to Transcription factor MYBS2
Length = 366
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/245 (44%), Positives = 140/245 (57%), Gaps = 22/245 (8%)
Query: 7 EAGVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRRK 66
+ G PWTEEEHR FL+GLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQ+N +RRK
Sbjct: 105 KKGTPWTEEEHRMFLMGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQTNSSRRK 164
Query: 67 RRSSLFDMVPDESMDLPPL---------------PGGQEPETQVLNQPALPPPREEEEVD 111
RRSSLFDMVP+ MD P+ Q P + ++ Q R ++
Sbjct: 165 RRSSLFDMVPEMPMDESPVVVEQLMLHSTQDEATSSNQLPISHLVKQKEPEFARHLSDLQ 224
Query: 112 SMEXXXXXXXXXXXXXXIMPDN----LQSTYPVIVPAYFSPFLQFSVPFWQNQKDEDGPV 167
+ + N ++ + + +P ++ + + W G
Sbjct: 225 LRKHEESEFTEPSLAALDLEMNHAAPFKTKFVLTMPTFYPALIPVPLTLWPPNVANVGES 284
Query: 168 QETHEIVKPVPVHSKSPIN-VDELVGMSKLSIGESNQETVS-TSLSLNLVGGQN-RQSAF 224
HEI+KP PV+ K IN DE+VGMSKL+IG+ + ++ ++LSL L G N RQSAF
Sbjct: 285 GTNHEILKPTPVNGKEVINKADEVVGMSKLTIGDGSSNSIEPSALSLQLTGPTNTRQSAF 344
Query: 225 HANPP 229
H NPP
Sbjct: 345 HVNPP 349
>AK105558
Length = 90
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/81 (88%), Positives = 73/81 (90%)
Query: 2 LFALDEAGVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSN 61
L + GVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSN
Sbjct: 3 LIKMTLTGVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSN 62
Query: 62 MTRRKRRSSLFDMVPDESMDL 82
MTRRKRRSSLFDMVPDE L
Sbjct: 63 MTRRKRRSSLFDMVPDEVACL 83
>Os08g0144000 Zinc finger, CCHC-type domain containing protein
Length = 383
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 60/75 (80%), Positives = 67/75 (89%)
Query: 9 GVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRRKRR 68
G W+EEEH++FLLGL KLGKGDWRGISRN+V SRTPTQVASHAQKYFIRQ+N+ RRKRR
Sbjct: 102 GEAWSEEEHKKFLLGLSKLGKGDWRGISRNYVGSRTPTQVASHAQKYFIRQTNVHRRKRR 161
Query: 69 SSLFDMVPDESMDLP 83
SSLFDMV D+S D P
Sbjct: 162 SSLFDMVIDDSDDQP 176
>Os01g0192300 Similar to I-box binding factor (Fragment)
Length = 310
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 68/71 (95%)
Query: 7 EAGVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRRK 66
+ GVPWTEEEHR+FL+GL+KLGKGDWRGISR+FV +RTPTQVASHAQKYF+RQS++T++K
Sbjct: 121 KKGVPWTEEEHRKFLVGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKYFLRQSSLTQKK 180
Query: 67 RRSSLFDMVPD 77
RRSSLFD++ D
Sbjct: 181 RRSSLFDVIED 191
>Os01g0603300 Similar to MCB2 protein
Length = 301
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 53/68 (77%), Positives = 65/68 (95%)
Query: 9 GVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRRKRR 68
GVPW+EEEHR FL+GL+KLGKGDWRGISR++V +RTPTQVASHAQK+F+RQS++ ++KRR
Sbjct: 132 GVPWSEEEHRLFLVGLEKLGKGDWRGISRSYVTTRTPTQVASHAQKFFLRQSSIGKKKRR 191
Query: 69 SSLFDMVP 76
SSLFDMVP
Sbjct: 192 SSLFDMVP 199
>Os08g0151000 Similar to MCB1 protein
Length = 295
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 63/71 (88%)
Query: 8 AGVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRRKR 67
A VPWTEEEHR FL GL+KLGKGDWRGIS+NFV +RTPTQVASHAQKYF+RQ+N ++KR
Sbjct: 6 AAVPWTEEEHRTFLAGLEKLGKGDWRGISKNFVTTRTPTQVASHAQKYFLRQTNPNKKKR 65
Query: 68 RSSLFDMVPDE 78
RSSLFDM+ +
Sbjct: 66 RSSLFDMMATD 76
>Os05g0195700 Similar to Transcription factor MYBS2
Length = 287
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/69 (78%), Positives = 64/69 (92%)
Query: 7 EAGVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRRK 66
+ GVPWTEEEH+ FL GL KLGKGDWRGISR+FV +RTPTQVASHAQKYF+RQ++MT++K
Sbjct: 120 KKGVPWTEEEHQMFLAGLDKLGKGDWRGISRHFVTTRTPTQVASHAQKYFLRQNSMTQKK 179
Query: 67 RRSSLFDMV 75
RRSSLFD+V
Sbjct: 180 RRSSLFDVV 188
>Os10g0562100 Homeodomain-like containing protein
Length = 265
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 72/88 (81%), Gaps = 2/88 (2%)
Query: 9 GVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRRKRR 68
GVPWTEEEH++FL GL++LGKGDWRGIS+NFV SRT TQVASHAQKYF+RQ+N ++KRR
Sbjct: 98 GVPWTEEEHKKFLEGLRQLGKGDWRGISKNFVTSRTATQVASHAQKYFLRQTNPGKKKRR 157
Query: 69 SSLFDMVPDESMDLPPLPG--GQEPETQ 94
+SLFD+V + S D P P G +P TQ
Sbjct: 158 ASLFDVVAECSDDQLPSPQSVGTKPPTQ 185
>Os01g0524500 Similar to Transcription factor MYBS3
Length = 284
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/67 (76%), Positives = 58/67 (86%)
Query: 9 GVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRRKRR 68
G+PWTEEEHR FLLGL K GKGDWR ISRNFV+SRTPTQVASHAQKYFIR ++M R +RR
Sbjct: 119 GIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRR 178
Query: 69 SSLFDMV 75
SS+ D+
Sbjct: 179 SSIHDIT 185
>Os05g0589400 Similar to I-box binding factor (Fragment)
Length = 270
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 62/72 (86%), Gaps = 3/72 (4%)
Query: 9 GVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRR--- 65
GVPW+E+EHR FL GL+KLGKGDWRGISR+FV +RTPTQVASHAQK+F+R ++ ++
Sbjct: 118 GVPWSEQEHRLFLAGLEKLGKGDWRGISRSFVTTRTPTQVASHAQKFFLRHNSAAKKTNN 177
Query: 66 KRRSSLFDMVPD 77
KRRSSLFDMV D
Sbjct: 178 KRRSSLFDMVQD 189
>Os04g0676700 Similar to MCB1 protein
Length = 318
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/101 (55%), Positives = 70/101 (69%), Gaps = 3/101 (2%)
Query: 9 GVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRRKRR 68
G+ WTE+EHR FLLGL+K GKGDWR ISRNFV+SRTPTQVASHAQKYFIR ++M R +RR
Sbjct: 143 GIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRERRR 202
Query: 69 SSLFDMVPDESMDLPPLPGGQEPETQVLNQPALPPPREEEE 109
SS+ D+ + D Q P T N P+ P + ++
Sbjct: 203 SSIHDITSVNNGDTSAA---QGPITGQPNGPSANPGKSSKQ 240
>Os04g0341900
Length = 201
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 60/79 (75%)
Query: 9 GVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRRKRR 68
G+PWTEEEHR FLLGL K GKGD ISRNFV+SRTPTQVASHAQKYFIR ++M R +RR
Sbjct: 105 GIPWTEEEHRLFLLGLDKFGKGDLHSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRR 164
Query: 69 SSLFDMVPDESMDLPPLPG 87
SS+ D+ + D+ G
Sbjct: 165 SSIHDITSVTAGDVAAQQG 183
>Os01g0142500 Homeodomain-like containing protein
Length = 294
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 64/81 (79%), Gaps = 1/81 (1%)
Query: 7 EAGVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRRK 66
+ GVPWTEEEH+ FLLGL+K GKGDWR ISRNFV +RTPTQVASHAQKYFIR ++ + K
Sbjct: 137 KKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKYFIRLNSGGKDK 196
Query: 67 RRSSLFDMVP-DESMDLPPLP 86
RRSS+ D+ + + D PP P
Sbjct: 197 RRSSIHDITTVNLTDDRPPSP 217
>Os05g0449900 Homeodomain-like containing protein
Length = 315
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 7 EAGVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRRK 66
+ GVPWTEEEH+ FL+GL+K G+GDWR ISRNFV SRTPTQVASHAQKYFIR ++ + K
Sbjct: 148 KKGVPWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKYFIRLNSGGKDK 207
Query: 67 RRSSLFDMVPDESMDLP 83
RRSS+ D+ +++LP
Sbjct: 208 RRSSIHDIT---TVNLP 221
>Os01g0853700 Similar to MCB1 protein
Length = 299
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
Query: 7 EAGVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRRK 66
+ GVPWTEEEH+ FL+GL+K G+GDWR ISR FV SRTPTQVASHAQKYFIR ++ + K
Sbjct: 134 KKGVPWTEEEHKSFLMGLKKYGRGDWRNISRYFVTSRTPTQVASHAQKYFIRLNSGGKDK 193
Query: 67 RRSSLFDMVPDESMDLP 83
RRSS+ D+ +++LP
Sbjct: 194 RRSSIHDIT---TVNLP 207
>Os05g0442400 Similar to MybSt1
Length = 182
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 54/69 (78%), Gaps = 2/69 (2%)
Query: 9 GVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRR--K 66
GVPWTEEEHR FL GL+K G+GDWR ISR V +RTPTQVASHAQK+FIRQ+N + R
Sbjct: 112 GVPWTEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKFFIRQANASSRGDS 171
Query: 67 RRSSLFDMV 75
+R S+ D+
Sbjct: 172 KRKSIHDIT 180
>Os01g0863300 Similar to MCB2 protein
Length = 148
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Query: 9 GVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNM-TRRKR 67
GVPW+E+EHR FL GL + G+GDWR ISR V +RTPTQVASHAQKYFIRQ+N R +
Sbjct: 79 GVPWSEDEHRLFLEGLDRYGRGDWRNISRFSVRTRTPTQVASHAQKYFIRQANAGARDSK 138
Query: 68 RSSLFDM 74
R S+ D+
Sbjct: 139 RKSIHDI 145
>Os06g0173400
Length = 331
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 46/63 (73%)
Query: 12 WTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRRKRRSSL 71
WT EEHR+FL GL+ G+G+W+ IS NFV S+TP QV+SHAQKYF R + K+R S+
Sbjct: 123 WTTEEHRQFLRGLRVYGRGEWKSISMNFVRSKTPVQVSSHAQKYFRRVESAAADKQRYSI 182
Query: 72 FDM 74
D+
Sbjct: 183 NDV 185
>Os06g0173300
Length = 394
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 46/63 (73%)
Query: 12 WTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRRKRRSSL 71
WT EEHR+FL GL+ G+G+W+ IS NFV S+TP QV+SHAQKYF R + K+R S+
Sbjct: 186 WTTEEHRQFLRGLRVYGRGEWKSISMNFVRSKTPVQVSSHAQKYFRRVESAAADKQRYSI 245
Query: 72 FDM 74
D+
Sbjct: 246 NDV 248
>Os06g0173200
Length = 321
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 40/49 (81%)
Query: 10 VPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIR 58
V WTEEEHR F++GL+ G+GDW+ IS++ V +RT QV+SHAQK+F++
Sbjct: 176 VIWTEEEHRLFMVGLRVFGRGDWKNISKHLVTTRTAAQVSSHAQKFFLK 224
>Os03g0837200
Length = 212
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 43/62 (69%)
Query: 12 WTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRRKRRSSL 71
W+EEEHR+ L G++++G G W IS +V SRTP Q+ASH QKYF+R + ++R S+
Sbjct: 131 WSEEEHRQCLRGIEEIGHGRWTQISIEYVPSRTPIQIASHTQKYFLRMAKPKEDRKRKSI 190
Query: 72 FD 73
D
Sbjct: 191 HD 192
>Os02g0511200
Length = 276
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 12 WTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRRK-RRSS 70
WT EEH +FL G+ GKG+W+ ++ FV +++ TQ+ASH QK+ IR+ K +R+S
Sbjct: 176 WTREEHSQFLHGISTYGKGNWKALASEFVKTKSSTQIASHYQKFCIREEKRRLSKCKRAS 235
Query: 71 LFDMVPDESMDLPPLPGGQEP 91
+ D+V + P G P
Sbjct: 236 IHDIVSPTTTTSAPESAGAGP 256
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,615,825
Number of extensions: 355759
Number of successful extensions: 1066
Number of sequences better than 1.0e-10: 23
Number of HSP's gapped: 1062
Number of HSP's successfully gapped: 25
Length of query: 234
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 136
Effective length of database: 11,918,829
Effective search space: 1620960744
Effective search space used: 1620960744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 154 (63.9 bits)