FiT-DB / Search/ Help/ Sample detail

Os08g0144000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, CCHC-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0253) R2 : 0.903
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.19 (0.0646) R2dC : 0.901 R2C : 0.894
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.304 (0.0533) R2dN8 : 0.00896 R2N8 : 0.00201
σ : 0.477
deviance : 104.1
__
_____
C
peak time of C : 3.95
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.84 0.453 11.6 0.219 4.29 -0.743 0.524 1.19 -0.293 4.22 49.52 777 -- --
94.76 0.453 11.6 0.307 4.23 -0.661 0.551 -- -0.278 4.2 51.56 846 -- --
93.57 0.451 11.6 0.212 4.29 -0.722 -- 1.27 -0.295 4.21 48 766 -- --
95.55 0.455 11.6 0.302 4.22 -0.626 -- -- -0.282 4.18 52 862 -- --
639.47 1.18 11.6 0.411 -- 3.14 -- 0.239 -0.109 -- 54.63 1169 -- --
100.87 0.471 11.6 0.334 4.18 -- 0.357 -- -0.265 3.95 -- -- -- --
101.24 0.471 11.6 0.329 4.19 -- -- -- -0.267 3.95 -- -- -- --
605.75 1.15 11.6 0.373 -- 2.68 -- -- 0.092 -- 72 4717 -- --
97.95 0.461 11.6 -- 4.21 -0.648 -- -- -0.306 4.17 49.91 884 -- --
1059.72 1.52 11.6 0.501 -- -- -- -- -0.155 -- -- -- -- --
104.1 0.477 11.6 -- 4.19 -- -- -- -0.304 3.95 -- -- -- --
609.42 1.15 11.6 -- -- 2.68 -- -- 0.0513 -- 72 4717 -- --
1066.35 1.52 11.7 -- -- -- -- -- -0.211 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.99 temperature 20.0 30 > th dose independent rect. 12 14
8 84.42 wind 9.0 720 < th dose independent rect. 17 10
11 84.92 precipitation 0.1 720 < th dose independent rect. 17 10
12 84.92 precipitation 0.1 720 < th dose dependent rect. 17 10
13 85.03 wind 7.0 720 < th dose independent rect. 17 1
14 85.15 wind 9.0 720 < th dose independent rect. 15 14
15 85.23 humidity 50.0 720 > th dose independent rect. 3 14
16 85.39 humidity 50.0 720 > th dose independent rect. 5 10
18 85.55 atmosphere 995.0 720 > th dose independent rect. 5 10
20 85.77 precipitation 0.1 720 < th dose independent rect. 15 14
21 85.77 precipitation 0.1 720 < th dose dependent rect. 15 14
22 85.78 temperature 10.0 720 > th dose independent rect. 17 10
23 85.78 radiation 30.0 720 < th dose independent rect. 17 10
25 85.78 temperature 10.0 720 > th dose independent rect. 3 14
26 85.79 humidity 60.0 720 > th dose independent rect. 20 19
29 85.91 temperature 10.0 720 > th dose independent rect. 5 10
30 85.91 atmosphere 1015.0 720 < th dose independent rect. 5 10
31 85.91 temperature 10.0 720 > th dose independent rect. 15 14
32 85.94 humidity 60.0 720 > th dose independent rect. 3 12
34 86.24 wind 1.0 90 > th dose independent rect. 17 12
36 86.32 wind 9.0 720 < th dose independent rect. 5 10
39 86.62 precipitation 0.1 720 < th dose independent rect. 5 10
40 86.62 atmosphere 1015.0 720 < th dose independent rect. 3 14
41 86.62 precipitation 0.1 720 < th dose dependent rect. 5 10
43 86.66 precipitation 0.1 720 < th dose independent rect. 15 5
44 86.66 precipitation 0.1 720 < th dose dependent rect. 15 5
49 86.84 wind 1.0 720 > th dose independent rect. 15 5
53 86.95 precipitation 0.1 720 < th dose independent rect. 8 19
54 86.95 precipitation 0.1 720 < th dose dependent rect. 8 19
55 86.97 temperature 20.0 720 > th dose independent rect. 12 3
57 87.08 atmosphere 995.0 30 > th dose dependent rect. 17 12
58 87.11 radiation 40.0 720 < th dose independent rect. 3 6
60 87.15 atmosphere 1015.0 30 < th dose independent rect. 12 14
62 87.18 precipitation 0.1 30 < th dose independent rect. 2 10
63 87.18 precipitation 0.1 30 < th dose dependent rect. 2 10
64 87.19 wind 9.0 720 < th dose independent rect. 15 5
71 87.44 humidity 50.0 10 > th dose independent rect. 5 12
72 87.44 wind 9.0 720 < th dose independent rect. 17 18
74 87.46 radiation 1.0 1440 > th dose independent rect. 11 2
84 87.63 temperature 10.0 1440 > th dose independent rect. 3 10
87 87.63 atmosphere 995.0 1440 > th dose independent rect. 3 10
88 87.63 temperature 10.0 1440 > th dose independent rect. 13 14
94 87.68 humidity 60.0 30 > th dose independent rect. 12 14
96 87.69 atmosphere 995.0 720 > th dose independent rect. 20 19
100 87.73 humidity 50.0 90 > th dose independent rect. 5 12
106 87.79 wind 9.0 30 < th dose independent rect. 12 14
109 87.84 temperature 10.0 30 > th dose independent rect. 2 10
111 87.84 atmosphere 995.0 30 > th dose independent rect. 2 10
112 87.84 atmosphere 1015.0 30 < th dose independent rect. 2 10
117 87.96 radiation 10.0 720 < th dose independent rect. 23 6
118 87.97 wind 9.0 30 < th dose independent rect. 2 10
120 87.99 wind 7.0 720 < th dose independent rect. 3 5
128 88.04 radiation 10.0 720 < th dose dependent rect. 23 6
133 88.08 radiation 40.0 720 < th dose dependent rect. 17 10
135 88.09 temperature 10.0 720 > th dose independent rect. 15 5
136 88.09 atmosphere 1015.0 720 < th dose independent rect. 15 5
137 88.09 temperature 10.0 720 > th dose independent rect. 20 19
139 88.10 temperature 10.0 720 > th dose independent rect. 3 5
140 88.10 temperature 30.0 720 < th dose independent rect. 3 5
141 88.10 humidity 50.0 720 > th dose independent rect. 3 5
143 88.10 atmosphere 995.0 720 > th dose independent rect. 3 5
144 88.10 temperature 10.0 720 > th dose independent rect. 8 19
145 88.11 atmosphere 1005.0 10 > th dose independent rect. 17 12
150 88.16 atmosphere 1015.0 720 < th dose independent rect. 12 11
151 88.16 precipitation 0.1 90 < th dose independent rect. 17 12
152 88.16 precipitation 0.1 90 < th dose dependent rect. 17 12
168 88.24 wind 9.0 720 < th dose independent rect. 23 6
169 88.24 wind 9.0 720 < th dose independent rect. 3 14
171 88.26 temperature 10.0 720 > th dose independent rect. 11 6
172 88.26 temperature 10.0 720 > th dose independent rect. 23 6
173 88.26 temperature 30.0 720 < th dose independent rect. 23 6
174 88.26 humidity 50.0 720 > th dose independent rect. 23 6
177 88.26 atmosphere 995.0 720 > th dose independent rect. 23 6
178 88.26 atmosphere 1015.0 720 < th dose independent rect. 11 6
182 88.26 temperature 10.0 720 > th dose independent rect. 5 18
183 88.26 temperature 10.0 720 > th dose independent rect. 17 18
184 88.27 temperature 20.0 10 > th dose independent rect. 12 22
191 88.32 humidity 80.0 720 < th dose independent rect. 17 1
193 88.35 humidity 60.0 30 > th dose independent rect. 12 5
200 88.39 radiation 40.0 720 < th dose independent rect. 15 14
202 88.40 wind 7.0 30 < th dose independent rect. 17 12
203 88.41 wind 9.0 720 < th dose independent rect. 20 19
205 88.42 atmosphere 995.0 720 > th dose independent rect. 3 14
208 88.44 radiation 40.0 30 < th dose independent rect. 13 13
210 88.44 precipitation 0.1 720 < th dose independent rect. 3 14
211 88.44 precipitation 0.1 720 < th dose dependent rect. 3 14
212 88.45 atmosphere 1015.0 720 < th dose independent rect. 3 5
213 88.45 precipitation 0.1 10 < th dose independent rect. 12 14
214 88.45 precipitation 0.1 10 < th dose dependent rect. 12 14
218 88.47 humidity 60.0 90 > th dose independent rect. 12 21
221 88.49 wind 9.0 270 < th dose independent rect. 3 12
225 88.51 wind 9.0 90 < th dose independent rect. 5 12
226 88.51 precipitation 0.1 720 < th dose independent rect. 15 21
227 88.51 precipitation 0.1 720 < th dose dependent rect. 15 21
231 88.57 temperature 10.0 30 > th dose dependent rect. 2 10
236 88.61 precipitation 0.1 270 < th dose independent rect. 23 12
237 88.61 precipitation 0.1 270 < th dose dependent rect. 23 12
249 88.69 wind 1.0 720 > th dose independent rect. 17 1
250 88.69 humidity 60.0 720 > th dose independent rect. 14 1
252 88.70 wind 9.0 720 < th dose independent rect. 15 21
253 88.71 wind 5.0 720 < th dose independent rect. 5 1
254 88.71 atmosphere 995.0 30 > th dose independent rect. 5 12
257 88.75 precipitation 0.1 720 < th dose independent rect. 3 5
259 88.75 precipitation 0.1 720 < th dose dependent rect. 3 5
260 88.76 atmosphere 995.0 30 > th dose independent rect. 12 14
263 88.77 wind 9.0 720 < th dose dependent rect. 17 1
265 88.78 temperature 10.0 30 > th dose independent rect. 5 12
267 88.78 temperature 10.0 30 > th dose independent rect. 17 12
268 88.78 atmosphere 1015.0 30 < th dose independent rect. 5 12
269 88.78 radiation 20.0 30 < th dose independent rect. 17 12
273 88.79 precipitation 0.1 720 < th dose independent rect. 23 6
277 88.79 precipitation 0.1 720 < th dose dependent rect. 23 6
278 88.80 wind 7.0 720 < th dose independent rect. 24 3
281 88.81 atmosphere 995.0 720 > th dose independent rect. 12 3
283 88.83 temperature 10.0 270 > th dose independent rect. 3 12
284 88.83 temperature 10.0 270 > th dose independent rect. 15 12
285 88.83 atmosphere 1015.0 270 < th dose independent rect. 3 12
286 88.83 precipitation 0.1 30 < th dose independent rect. 5 12
287 88.83 precipitation 0.1 30 < th dose dependent rect. 5 12
291 88.85 radiation 40.0 720 < th dose independent rect. 18 15
303 88.87 wind 9.0 720 < th dose independent rect. 8 19
309 88.94 atmosphere 1010.0 720 < th dose independent rect. 12 3
313 88.96 temperature 10.0 720 > th dose independent rect. 17 1
314 88.96 atmosphere 1015.0 720 < th dose independent rect. 17 1
315 88.96 radiation 30.0 720 < th dose independent rect. 17 1
318 88.96 temperature 10.0 720 > th dose independent rect. 18 23
320 88.97 atmosphere 995.0 30 > th dose independent rect. 17 12
326 88.99 temperature 10.0 720 > th dose independent rect. 5 1
327 88.99 temperature 30.0 720 < th dose independent rect. 5 1
328 88.99 humidity 50.0 720 > th dose independent rect. 5 1
331 88.99 atmosphere 995.0 720 > th dose independent rect. 5 1
332 88.99 atmosphere 1015.0 720 < th dose independent rect. 5 1
333 88.99 radiation 20.0 720 < th dose independent rect. 5 1
336 88.99 wind 9.0 720 < th dose independent rect. 12 3
337 88.99 precipitation 0.1 720 < th dose independent rect. 24 3
339 88.99 temperature 10.0 720 > th dose independent rect. 6 23
340 88.99 precipitation 0.1 720 < th dose dependent rect. 24 3
342 89.01 radiation 40.0 270 < th dose independent rect. 15 12
351 89.02 temperature 10.0 30 > th dose dependent rect. 12 14
352 89.04 precipitation 0.1 720 < th dose independent rect. 5 1
355 89.04 atmosphere 1015.0 720 < th dose independent rect. 5 18
356 89.04 precipitation 0.1 720 < th dose dependent rect. 5 1
358 89.04 radiation 40.0 30 < th dose dependent rect. 17 12
359 89.05 wind 9.0 270 < th dose independent rect. 11 12
367 89.07 temperature 25.0 270 < th dose independent rect. 22 10
369 89.08 temperature 10.0 720 > th dose independent rect. 24 3
370 89.08 temperature 30.0 720 < th dose independent rect. 24 3
371 89.08 humidity 50.0 720 > th dose independent rect. 24 3
374 89.08 atmosphere 995.0 720 > th dose independent rect. 24 3
375 89.08 radiation 1.0 720 < th dose independent rect. 24 3
381 89.08 temperature 10.0 720 > th dose independent rect. 3 21
382 89.08 radiation 1.0 720 < th dose dependent rect. 24 3
387 89.11 temperature 10.0 720 > th dose independent rect. 12 11
388 89.11 temperature 10.0 720 > th dose independent rect. 24 11
389 89.11 atmosphere 995.0 720 > th dose independent rect. 24 11
405 89.12 temperature 10.0 720 > th dose independent rect. 15 21
406 89.14 temperature 30.0 30 < th dose independent rect. 12 14
410 89.15 humidity 50.0 30 > th dose independent rect. 17 12
416 89.18 atmosphere 1000.0 10 > th dose dependent rect. 17 14
417 89.19 temperature 20.0 30 > th dose independent rect. 12 5
421 89.20 wind 9.0 270 < th dose independent rect. 23 12
424 89.22 precipitation 0.1 720 < th dose independent rect. 6 14
425 89.22 precipitation 0.1 720 < th dose independent rect. 17 18
426 89.22 precipitation 0.1 720 < th dose dependent rect. 6 14
427 89.22 precipitation 0.1 720 < th dose dependent rect. 17 18
429 89.24 precipitation 0.1 720 < th dose independent rect. 6 23
430 89.24 precipitation 0.1 720 < th dose dependent rect. 6 23
435 89.27 humidity 50.0 720 > th dose independent rect. 24 11
438 89.28 wind 9.0 720 < th dose dependent rect. 5 2
443 89.29 atmosphere 995.0 720 > th dose independent rect. 18 15
444 89.29 humidity 50.0 720 > th dose dependent rect. 5 1
445 89.29 humidity 50.0 720 > th dose dependent rect. 20 20
456 89.31 radiation 40.0 720 < th dose dependent rect. 5 1
477 89.38 atmosphere 1015.0 720 < th dose independent rect. 3 21
486 89.43 precipitation 0.1 720 < th dose independent rect. 9 10
490 89.43 precipitation 0.1 720 < th dose dependent rect. 9 10
501 89.45 temperature 10.0 720 > th dose dependent rect. 5 1
508 89.46 radiation 40.0 10 < th dose dependent sin 12 NA
585 89.63 humidity 50.0 720 > th dose independent rect. 17 10
591 89.64 atmosphere 1015.0 270 < th dose dependent rect. 21 11
598 89.66 atmosphere 1005.0 10 > th dose independent rect. 17 14
619 89.69 wind 1.0 720 > th dose independent rect. 9 10
629 89.70 precipitation 0.1 720 < th dose independent rect. 12 3
634 89.70 precipitation 0.1 720 < th dose independent rect. 20 19
635 89.70 precipitation 0.1 720 < th dose dependent rect. 12 3
636 89.70 precipitation 0.1 720 < th dose dependent rect. 20 19
640 89.72 temperature 10.0 720 > th dose independent rect. 9 9
641 89.72 atmosphere 1015.0 720 < th dose independent rect. 9 9
642 89.72 temperature 10.0 720 > th dose independent rect. 18 15
643 89.72 humidity 50.0 720 > th dose independent rect. 18 15
645 89.72 atmosphere 995.0 720 > th dose dependent rect. 17 1
646 89.73 precipitation 0.1 720 < th dose independent rect. 17 1
649 89.73 precipitation 0.1 720 < th dose dependent rect. 17 1
653 89.74 temperature 10.0 720 > th dose independent rect. 21 9
655 89.74 humidity 50.0 720 > th dose independent rect. 21 9
658 89.74 atmosphere 995.0 720 > th dose independent rect. 21 9
659 89.74 radiation 20.0 720 < th dose independent rect. 21 9
663 89.74 temperature 10.0 720 > th dose independent rect. 6 15
665 89.74 humidity 50.0 270 > th dose dependent rect. 12 1
666 89.74 atmosphere 995.0 30 > th dose dependent rect. 17 19
670 89.75 humidity 50.0 270 > th dose dependent rect. 19 12
684 89.78 atmosphere 1015.0 720 < th dose independent rect. 24 3
700 89.83 radiation 40.0 720 < th dose independent rect. 15 5
707 89.85 temperature 30.0 30 < th dose independent rect. 12 5
714 89.88 precipitation 0.1 270 < th dose independent rect. 13 23
715 89.88 precipitation 0.1 270 < th dose dependent rect. 13 23
759 89.94 atmosphere 1015.0 270 < th dose independent rect. 24 12
766 89.95 humidity 60.0 14400 > th dose independent rect. 3 5
770 89.96 humidity 50.0 720 > th dose dependent rect. 19 5
801 90.06 temperature 30.0 30 < th dose independent rect. 12 22
803 90.06 humidity 50.0 30 > th dose dependent rect. 5 12
825 90.10 humidity 50.0 720 > th dose dependent rect. 3 13
857 90.19 humidity 50.0 30 > th dose dependent rect. 12 5
858 90.19 radiation 10.0 10 < th dose dependent rect. 17 14
860 90.20 wind 1.0 30 > th dose independent rect. 5 12
903 90.23 radiation 1.0 720 > th dose dependent rect. 17 1
910 90.25 precipitation 0.1 720 < th dose independent rect. 11 5
915 90.25 precipitation 0.1 720 < th dose dependent rect. 11 5
922 90.27 precipitation 0.1 30 < th dose independent rect. 17 19
924 90.27 precipitation 0.1 30 < th dose dependent rect. 17 19
940 90.29 wind 9.0 720 < th dose independent rect. 21 9
952 90.29 atmosphere 1015.0 720 < th dose independent rect. 6 14
966 90.32 wind 1.0 720 > th dose independent rect. 8 12
970 90.33 atmosphere 995.0 720 > th dose independent rect. 17 10
979 90.35 humidity 50.0 720 > th dose dependent rect. 3 5
985 90.37 radiation 1.0 1440 < th dose independent rect. 9 2
996 90.37 humidity 90.0 720 < th dose dependent rect. 17 1
997 90.37 radiation 1.0 1440 < th dose dependent rect. 9 2