Os01g0603300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MCB2 protein.
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Os01g0603300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MCB2 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118.48 | 0.511 | 11.2 | -2.28 | 2.86 | -3.07 | 0.3 | -4.46 | -0.346 | 2.27 | 8.054 | 12 | 9.11 | -- |
| 146.41 | 0.568 | 11.2 | -1.91 | 3.15 | -4.08 | -0.946 | -- | -0.213 | 1.18 | 6.986 | 34 | 8.91 | -- |
| 118.67 | 0.507 | 11.2 | -2.26 | 2.75 | -3.13 | -- | -4.41 | -0.345 | 2.21 | 7.861 | 12 | 9.29 | -- |
| 148.59 | 0.568 | 11.2 | -1.91 | 3.24 | -4.01 | -- | -- | -0.236 | 1.27 | 4.887 | 43 | 9.2 | -- |
| 156.04 | 0.582 | 11.2 | -2.03 | -- | -4.52 | -- | -2.81 | -0.336 | -- | -2.267 | 3 | 12.5 | -- |
| 187.4 | 0.642 | 11.2 | -2.24 | 3.83 | -- | 2.47 | -- | -0.462 | 5.16 | -- | -- | -- | -- |
| 202.04 | 0.666 | 11.2 | -2.24 | 3.84 | -- | -- | -- | -0.475 | 5.06 | -- | -- | -- | -- |
| 166.53 | 0.601 | 11.2 | -1.91 | -- | -4.63 | -- | -- | -0.287 | -- | 0.5674 | 18 | 12.8 | -- |
| 238.5 | 0.719 | 11.2 | -- | 2.89 | -4.9 | -- | -- | 0.0237 | 0.293 | 7.179 | 57 | 9.86 | -- |
| 976.05 | 1.46 | 11.2 | -2.11 | -- | -- | -- | -- | -0.377 | -- | -- | -- | -- | -- |
| 334.76 | 0.856 | 11.1 | -- | 3.8 | -- | -- | -- | -0.225 | 5.08 | -- | -- | -- | -- |
| 256.25 | 0.746 | 11.1 | -- | -- | -4.93 | -- | -- | -0.0318 | -- | 8.234 | 17 | 12.6 | -- |
| 1093.04 | 1.54 | 11.2 | -- | -- | -- | -- | -- | -0.143 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 13 |
| 19 | 118.01 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 13 |
| 21 | 118.63 | temperature | 10 | 10 | > th | dose dependent | sin | 15 | NA |
| 36 | 120.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 47 | 121.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 5 |
| 98 | 124.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 11 |
| 136 | 126.77 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 13 |
| 145 | 126.98 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 155 | 127.55 | temperature | 10 | 720 | > th | dose dependent | sin | 22 | NA |
| 191 | 128.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 14 |
| 196 | 128.93 | temperature | 30 | 10 | < th | dose dependent | sin | 14 | NA |
| 205 | 129.06 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 209 | 129.19 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 12 |
| 212 | 129.27 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 21 |
| 346 | 132.02 | radiation | 10 | 720 | < th | dose independent | rect. | 16 | 13 |
| 434 | 133.38 | radiation | 20 | 720 | < th | dose independent | rect. | 15 | 15 |
| 477 | 133.92 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 12 |
| 486 | 134.06 | radiation | 20 | 720 | < th | dose dependent | rect. | 16 | 13 |
| 492 | 134.14 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 14 |
| 555 | 135.16 | radiation | 40 | 720 | < th | dose dependent | rect. | 15 | 14 |
| 605 | 135.94 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 19 |
| 610 | 136.01 | temperature | 30 | 720 | < th | dose independent | sin | 23 | NA |
| 712 | 137.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 7 |
| 723 | 137.24 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 3 |
| 754 | 137.58 | radiation | 10 | 720 | < th | dose dependent | rect. | 17 | 10 |
| 765 | 137.66 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 18 |
| 807 | 138.00 | temperature | 15 | 90 | > th | dose dependent | rect. | 15 | 18 |
| 838 | 138.23 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 13 |
| 854 | 138.37 | radiation | 40 | 720 | < th | dose independent | rect. | 17 | 18 |
| 868 | 138.52 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 11 |
| 870 | 138.54 | radiation | 30 | 270 | < th | dose independent | sin | 13 | NA |
| 886 | 138.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 20 |
| 927 | 139.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 943 | 139.21 | radiation | 40 | 720 | < th | dose independent | rect. | 1 | 10 |
| 958 | 139.32 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 20 |
| 982 | 139.49 | radiation | 20 | 720 | < th | dose dependent | rect. | 16 | 4 |
| 997 | 139.57 | wind | 7 | 270 | < th | dose independent | rect. | 12 | 13 |