Os04g0676700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MCB1 protein.
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Os04g0676700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MCB1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.27 | 0.34 | 9.31 | 0.559 | 2.22 | 1.56 | 1.61 | 1.17 | 0.0633 | 14.8 | 30.1 | 8 | -- | -- |
| 53.39 | 0.343 | 9.29 | 0.753 | 2.2 | 1.54 | 1.19 | -- | 0.112 | 14.8 | 30.1 | 8 | -- | -- |
| 58.16 | 0.358 | 9.28 | 0.81 | 2.19 | 1.5 | -- | -0.226 | 0.122 | 14.7 | 30.1 | 8 | -- | -- |
| 58.23 | 0.358 | 9.28 | 0.773 | 2.19 | 1.5 | -- | -- | 0.112 | 14.7 | 30.1 | 7 | -- | -- |
| 243.18 | 0.726 | 9.36 | 0.362 | -- | -0.753 | -- | -1.11 | -0.281 | -- | 65.19 | 14 | -- | -- |
| 85.22 | 0.433 | 9.36 | 0.399 | 1.69 | -- | 1.02 | -- | -0.181 | 15 | -- | -- | -- | -- |
| 88.72 | 0.441 | 9.35 | 0.422 | 1.69 | -- | -- | -- | -0.175 | 14.9 | -- | -- | -- | -- |
| 211.77 | 0.678 | 9.29 | 0.935 | -- | 1.42 | -- | -- | 0.0802 | -- | 57.54 | 2513 | -- | -- |
| 72.45 | 0.399 | 9.32 | -- | 2.07 | 1.18 | -- | -- | -0.0264 | 14.8 | 30.1 | 7 | -- | -- |
| 252.84 | 0.743 | 9.36 | 0.35 | -- | -- | -- | -- | -0.219 | -- | -- | -- | -- | -- |
| 93.41 | 0.452 | 9.36 | -- | 1.68 | -- | -- | -- | -0.222 | 14.9 | -- | -- | -- | -- |
| 217.44 | 0.687 | 9.32 | -- | -- | 1.42 | -- | -- | -0.0572 | -- | 106.6 | 1098 | -- | -- |
| 256.06 | 0.747 | 9.37 | -- | -- | -- | -- | -- | -0.258 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.16 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 21 |
| 2 | 47.23 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 17 | 49.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 19 | 50.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 23 | 50.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 25 | 50.85 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 36 | 51.24 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 42 | 51.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 47 | 51.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 48 | 51.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 64 | 52.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 66 | 52.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 70 | 52.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 71 | 52.34 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 94 | 52.69 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 96 | 52.74 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 105 | 52.90 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 107 | 52.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 111 | 52.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 189 | 53.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 192 | 53.92 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 218 | 54.13 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 304 | 54.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 20 |
| 393 | 55.58 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 447 | 56.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 501 | 56.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 525 | 56.70 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 10 |
| 577 | 56.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 628 | 57.26 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 704 | 57.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 721 | 57.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 757 | 58.14 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 12 |
| 768 | 58.21 | temperature | 20 | 10 | > th | dose independent | rect. | 10 | 20 |
| 809 | 58.49 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 828 | 58.60 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 21 |
| 870 | 58.85 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 897 | 59.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 929 | 59.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 15 |