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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0442400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to MybSt1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.63 (0.0881) R2 : 0.155
β1 : -1.77 (0.325) R2dD : 0.0601 R2D : -0.00463
β2 : 1.57 (0.321) R2dC : 0.102 R2C : -0.17
β3 : -4.11 (0.518) R2dE : 0.289 R2E : -0.0533
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1 (0.199) R2dN8 : 0.0743 R2N8 : -0.0225
σ : 1.62
deviance : 1205.6
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_____
C
peak time of C : 2.27
E
wheather : radiation
threshold : 1.56
memory length : 4510
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 4.14
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1190.21 1.62 5.65 -1.95 1.27 -3.92 -2.28 0.435 -1.05 2.08 1.548 4483 3.77 --
1189.44 1.61 5.65 -1.87 1.45 -4.04 -2.09 -- -1.03 2.06 1.513 4500 4.13 --
1199.12 1.61 5.61 -1.41 1.56 -3.98 -- -1.72 -0.873 1.99 1.448 4514 4.68 --
1205.6 1.62 5.63 -1.77 1.57 -4.11 -- -- -1 2.27 1.56 4510 4.14 --
1224.54 1.63 5.59 -1.53 -- -3.04 -- -1.56 -0.882 -- 1.319 4400 3.09 --
1356.11 1.73 5.5 -1.26 0.345 -- 2.06 -- -0.442 13.8 -- -- -- --
1372.3 1.73 5.5 -1.2 0.361 -- -- -- -0.429 14.6 -- -- -- --
1225.29 1.63 5.62 -1.89 -- -3.23 -- -- -0.97 -- 1.374 4400 2.52 --
1276.16 1.66 5.58 -- 1.71 -3.86 -- -- -0.759 1.96 1.86 4546 5.36 --
1379.91 1.74 5.5 -1.21 -- -- -- -- -0.438 -- -- -- -- --
1410.08 1.76 5.47 -- 0.384 -- -- -- -0.295 14.7 -- -- -- --
1303.22 1.68 5.55 -- -- -2.38 -- -- -0.67 -- 1.66 4407 4.73 --
1418.7 1.76 5.47 -- -- -- -- -- -0.303 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1209.28 radiation 1 4320 > th dose independent rect. 18 13
10 1219.27 radiation 10 4320 < th dose dependent rect. 18 11
11 1219.97 radiation 1 4320 < th dose independent rect. 18 14
16 1220.79 wind 9 14400 < th dose independent rect. 6 4
17 1221.18 radiation 1 4320 > th dose independent sin 10 NA
22 1224.00 temperature 20 270 > th dose independent rect. 4 15
25 1224.56 radiation 1 4320 < th dose independent sin 10 NA
26 1225.18 humidity 90 14400 > th dose dependent rect. 22 2
27 1225.47 radiation 1 14400 > th dose independent rect. 18 1
38 1225.80 humidity 90 14400 > th dose dependent rect. 21 4
41 1226.10 radiation 10 4320 < th dose dependent rect. 24 5
43 1226.49 humidity 90 14400 > th dose dependent rect. 10 21
69 1227.84 humidity 90 14400 > th dose dependent rect. 5 2
72 1227.90 humidity 90 14400 > th dose dependent rect. 21 21
77 1228.10 humidity 90 14400 < th dose independent rect. 20 5
80 1228.15 humidity 90 14400 > th dose dependent sin 14 NA
95 1228.47 humidity 90 14400 < th dose independent rect. 17 14
98 1228.50 humidity 90 14400 < th dose independent rect. 17 10
101 1228.52 humidity 90 14400 < th dose independent sin 14 NA
148 1229.00 humidity 90 14400 > th dose dependent no NA NA
174 1229.27 radiation 1 4320 > th dose independent rect. 5 5
178 1229.29 humidity 90 14400 > th dose independent rect. 14 17
186 1229.39 humidity 90 14400 > th dose dependent rect. 2 23
208 1229.57 humidity 90 14400 > th dose dependent rect. 16 11
213 1229.59 radiation 1 4320 > th dose independent rect. 18 23
235 1229.73 humidity 90 14400 > th dose independent rect. 17 14
249 1229.84 radiation 10 4320 < th dose dependent rect. 18 2
253 1229.88 humidity 90 14400 > th dose independent rect. 10 20
281 1230.12 radiation 1 4320 < th dose independent rect. 24 10
286 1230.17 humidity 90 14400 < th dose independent rect. 21 3
290 1230.18 radiation 1 4320 < th dose independent rect. 22 12
291 1230.18 radiation 30 14400 < th dose dependent rect. 24 5
301 1230.26 radiation 1 4320 < th dose independent rect. 5 5
349 1230.74 humidity 90 14400 > th dose independent rect. 21 18
351 1230.76 humidity 90 14400 > th dose independent rect. 21 16
353 1230.79 humidity 90 14400 > th dose independent sin 13 NA
385 1231.08 humidity 90 14400 < th dose independent rect. 22 1
410 1231.22 radiation 1 4320 < th dose independent rect. 16 19
510 1231.94 humidity 90 14400 < th dose independent rect. 20 17
561 1232.34 humidity 90 14400 > th dose independent rect. 22 2
638 1232.84 humidity 90 14400 > th dose dependent sin 4 NA
663 1232.94 humidity 90 14400 > th dose independent rect. 21 4
683 1233.06 humidity 90 14400 > th dose independent rect. 18 9
706 1233.22 humidity 90 14400 < th dose independent rect. 20 23
712 1233.31 humidity 90 14400 < th dose independent rect. 5 23
723 1233.41 radiation 1 4320 < th dose dependent rect. 2 3
759 1233.71 humidity 90 14400 < th dose independent no NA NA
784 1233.87 radiation 10 4320 < th dose dependent rect. 22 7
816 1234.14 radiation 1 4320 < th dose independent rect. 18 23
823 1234.22 humidity 90 14400 > th dose independent no NA NA
840 1234.32 radiation 1 4320 < th dose dependent rect. 18 16
851 1234.42 radiation 1 4320 < th dose dependent rect. 18 14
855 1234.45 humidity 90 14400 > th dose dependent rect. 4 7
876 1234.62 humidity 90 14400 < th dose independent rect. 23 23
879 1234.64 humidity 90 14400 > th dose dependent rect. 3 12
945 1235.42 humidity 90 14400 > th dose independent rect. 2 23
948 1235.44 humidity 90 14400 > th dose independent rect. 4 23
968 1235.57 humidity 90 14400 > th dose independent rect. 1 10
978 1235.69 humidity 90 14400 > th dose independent rect. 5 2
986 1235.77 temperature 15 270 > th dose dependent rect. 2 7