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Os01g0187900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transcription factor MYBS2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.61 (0.0259) R2 : 0.808
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.28 (0.0799) R2dC : 1.06 R2C : 0.521
β3 : -1.31 (0.0765) R2dE : 0.216 R2E : -0.319
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.476 (0.0548) R2dN8 : 0.0602 R2N8 : 0.0712
σ : 0.486
deviance : 108.75
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_____
C
peak time of C : 15
E
wheather : temperature
threshold : 18.41
memory length : 255
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 0.767
open length of G : 18.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
96.24 0.461 8.61 0.688 3.35 -1.35 -0.427 -0.218 -0.476 15.1 19.88 256 1 18.4
95.77 0.456 8.61 0.723 3.35 -1.34 -0.665 -- -0.473 15.1 19.66 252 1.02 18.5
96.17 0.457 8.61 0.655 3.36 -1.39 -- -0.464 -0.477 15 19.61 254 0.933 18.6
97.15 0.459 8.61 0.703 3.34 -1.37 -- -- -0.477 15.1 19.68 262 0.8 18.7
476.57 1.02 8.55 0.528 -- -1.06 -- -0.0393 -0.404 -- 22.6 2802 0.0498 19.3
154.21 0.582 8.66 0.408 2.57 -- -0.97 -- -0.66 16 -- -- -- --
156.93 0.587 8.66 0.396 2.57 -- -- -- -0.665 16 -- -- -- --
474.26 1.01 8.57 0.661 -- -1.03 -- -- -0.408 -- 22.7 2608 2.19 24
108.75 0.486 8.61 -- 3.28 -1.31 -- -- -0.476 15 18.41 255 0.767 18.9
517.7 1.06 8.65 0.291 -- -- -- -- -0.734 -- -- -- -- --
161.06 0.594 8.67 -- 2.56 -- -- -- -0.71 16 -- -- -- --
465.1 1 8.58 -- -- -1.16 -- -- -0.4 -- 24 2629 0.976 24
519.93 1.06 8.66 -- -- -- -- -- -0.766 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 97.18 temperature 20.0 270 > th dose independent rect. 1 18
2 97.56 temperature 10.0 270 > th dose dependent rect. 24 6
3 97.65 temperature 15.0 270 > th dose independent rect. 23 22
4 97.74 temperature 10.0 270 > th dose dependent rect. 1 4
10 100.35 humidity 60.0 270 > th dose dependent rect. 20 4
16 101.01 precipitation 0.1 270 < th dose independent rect. 1 4
17 101.01 precipitation 0.1 270 < th dose dependent rect. 1 4
23 101.63 temperature 10.0 270 > th dose dependent rect. 24 20
24 101.64 wind 9.0 270 < th dose independent rect. 5 20
25 101.91 precipitation 0.1 270 < th dose independent rect. 5 20
26 101.91 precipitation 0.1 270 < th dose dependent rect. 5 20
28 101.98 radiation 1.0 270 < th dose independent rect. 1 4
30 102.00 radiation 10.0 270 < th dose dependent rect. 1 4
32 102.06 atmosphere 1015.0 1440 < th dose independent rect. 3 5
35 102.09 wind 7.0 270 < th dose independent rect. 1 4
38 102.12 temperature 10.0 270 > th dose independent rect. 1 4
40 102.12 temperature 30.0 270 < th dose independent rect. 1 4
41 102.12 humidity 50.0 270 > th dose independent rect. 1 4
44 102.12 atmosphere 995.0 270 > th dose independent rect. 1 4
45 102.12 atmosphere 1010.0 270 < th dose independent rect. 1 4
50 102.12 temperature 10.0 270 > th dose independent rect. 5 20
51 102.13 radiation 10.0 270 < th dose independent rect. 24 6
61 102.66 radiation 10.0 270 < th dose dependent rect. 24 6
76 103.20 wind 9.0 270 < th dose dependent rect. 1 4
78 103.26 radiation 1.0 270 < th dose dependent rect. 5 20
82 103.39 wind 9.0 270 < th dose dependent rect. 19 5
91 103.64 atmosphere 1010.0 270 < th dose independent rect. 24 6
92 103.68 temperature 15.0 270 > th dose independent rect. 10 10
99 103.74 wind 5.0 270 < th dose independent rect. 20 4
125 103.98 humidity 50.0 270 > th dose dependent rect. 1 4
141 104.16 temperature 15.0 270 > th dose independent rect. 15 14
176 104.47 humidity 80.0 270 > th dose independent rect. 20 4
188 104.79 precipitation 0.1 270 < th dose independent rect. 24 19
189 104.79 precipitation 0.1 270 < th dose dependent rect. 24 19
191 104.87 temperature 10.0 270 > th dose independent rect. 20 4
192 104.87 temperature 30.0 270 < th dose independent rect. 20 4
193 104.87 humidity 50.0 270 > th dose independent rect. 20 4
196 104.87 atmosphere 995.0 270 > th dose independent rect. 20 4
197 104.87 radiation 1.0 270 < th dose independent rect. 20 4
203 104.87 atmosphere 1015.0 270 < th dose independent rect. 24 20
204 104.87 radiation 1.0 270 < th dose dependent rect. 20 4
210 104.91 precipitation 0.1 270 < th dose independent rect. 19 5
211 104.91 precipitation 0.1 270 < th dose dependent rect. 19 5
247 105.34 atmosphere 995.0 270 > th dose independent rect. 24 20
251 105.44 radiation 20.0 4320 < th dose independent rect. 3 3
262 105.79 wind 9.0 270 < th dose dependent rect. 21 2
264 105.80 wind 5.0 10 < th dose dependent rect. 3 4
265 105.86 wind 9.0 270 < th dose independent rect. 24 20
268 105.87 wind 5.0 270 < th dose independent rect. 21 2
308 106.30 radiation 30.0 4320 < th dose independent rect. 23 9
322 106.51 atmosphere 995.0 270 > th dose dependent rect. 1 4
338 106.80 radiation 10.0 270 < th dose dependent rect. 24 19
340 106.83 temperature 10.0 720 > th dose dependent rect. 17 12
344 106.92 radiation 30.0 4320 < th dose independent rect. 6 2
356 107.08 radiation 1.0 270 < th dose independent rect. 24 19
357 107.08 humidity 50.0 270 > th dose independent rect. 5 20
358 107.09 temperature 10.0 270 > th dose independent rect. 21 2
359 107.09 temperature 30.0 270 < th dose independent rect. 21 2
360 107.09 humidity 50.0 270 > th dose independent rect. 21 2
363 107.09 atmosphere 995.0 270 > th dose independent rect. 21 2
364 107.09 radiation 1.0 270 < th dose independent rect. 21 2
370 107.09 radiation 1.0 270 < th dose dependent rect. 21 2
411 107.34 precipitation 0.1 270 < th dose independent rect. 21 2
413 107.34 precipitation 0.1 270 < th dose dependent rect. 21 2
424 107.42 wind 1.0 270 > th dose independent rect. 1 3
431 107.50 radiation 30.0 4320 < th dose independent rect. 17 15
452 107.76 temperature 10.0 10 > th dose dependent rect. 3 4
490 108.14 humidity 50.0 43200 > th dose independent rect. 22 6
493 108.20 temperature 15.0 270 > th dose independent rect. 3 23
496 108.23 humidity 70.0 10 > th dose dependent rect. 21 5
524 108.37 radiation 10.0 10 < th dose independent rect. 2 8
563 108.60 atmosphere 1015.0 270 < th dose independent rect. 10 10
564 108.60 temperature 10.0 270 > th dose independent rect. 20 14
565 108.60 atmosphere 995.0 270 > th dose independent rect. 20 14
568 108.63 wind 9.0 270 < th dose independent rect. 20 14
600 108.68 radiation 20.0 90 < th dose dependent rect. 2 19
604 108.70 humidity 50.0 270 > th dose independent rect. 20 14
623 108.86 precipitation 0.1 10 < th dose independent rect. 2 5
625 108.86 precipitation 0.1 10 < th dose dependent rect. 2 5
631 108.87 temperature 10.0 10 > th dose dependent rect. 3 19
637 108.92 atmosphere 995.0 270 > th dose independent rect. 5 20
656 108.98 radiation 20.0 10 < th dose dependent rect. 3 19
749 109.30 radiation 40.0 270 < th dose independent rect. 15 14
773 109.37 wind 3.0 30 < th dose independent rect. 3 4
783 109.42 radiation 1.0 270 < th dose independent rect. 5 20
839 109.61 radiation 1.0 270 < th dose independent rect. 24 12
842 109.63 radiation 30.0 10 < th dose dependent rect. 3 4
844 109.65 radiation 10.0 10 < th dose independent rect. 3 4
896 109.73 radiation 20.0 10 < th dose dependent rect. 3 7
898 109.75 radiation 40.0 270 < th dose independent rect. 13 16
906 109.78 wind 1.0 270 > th dose independent rect. 20 4
919 109.80 temperature 10.0 720 > th dose dependent rect. 17 19
935 109.86 temperature 10.0 270 > th dose independent rect. 5 10
936 109.86 atmosphere 1015.0 270 < th dose independent rect. 5 10
964 109.92 wind 1.0 270 > th dose independent rect. 10 10
966 109.93 precipitation 0.1 10 < th dose independent rect. 7 19
967 109.93 precipitation 0.1 10 < th dose dependent rect. 7 19
970 109.94 radiation 10.0 10 < th dose independent rect. 2 20
986 109.97 wind 9.0 270 < th dose independent rect. 5 10
991 109.98 temperature 20.0 10 > th dose independent rect. 3 4