Os05g0195700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor MYBS2.
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Os05g0195700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor MYBS2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.4 | 0.494 | 11.2 | 1.15 | 0.967 | -3.14 | -0.962 | -1.42 | 0.596 | 9.21 | 0.6048 | 1436 | -- | -- |
| 111.42 | 0.492 | 11.2 | 1.03 | 0.973 | -2.8 | -0.961 | -- | 0.599 | 9.21 | 0.5945 | 1434 | -- | -- |
| 113.51 | 0.496 | 11.2 | 1.13 | 1.03 | -3.23 | -- | -1.67 | 0.593 | 9.28 | 0.5948 | 1428 | -- | -- |
| 114.72 | 0.499 | 11.2 | 0.977 | 0.954 | -2.84 | -- | -- | 0.593 | 9.13 | 0.6068 | 1436 | -- | -- |
| 145.54 | 0.562 | 11.2 | 1.1 | -- | -3.54 | -- | -1.22 | 0.583 | -- | 0.6441 | 1499 | -- | -- |
| 198.19 | 0.66 | 11.1 | 1.74 | 0.958 | -- | -1.18 | -- | 0.937 | 9.18 | -- | -- | -- | -- |
| 203.02 | 0.667 | 11.1 | 1.69 | 0.967 | -- | -- | -- | 0.935 | 9.01 | -- | -- | -- | -- |
| 144.62 | 0.56 | 11.3 | 0.959 | -- | -3.29 | -- | -- | 0.535 | -- | 0.7732 | 1501 | -- | -- |
| 136.3 | 0.544 | 11.2 | -- | 0.904 | -3.32 | -- | -- | 0.429 | 8.81 | 0.5317 | 1444 | -- | -- |
| 256.76 | 0.749 | 11.2 | 1.69 | -- | -- | -- | -- | 0.941 | -- | -- | -- | -- | -- |
| 278.65 | 0.781 | 11.2 | -- | 0.97 | -- | -- | -- | 0.746 | 8.88 | -- | -- | -- | -- |
| 166.22 | 0.6 | 11.3 | -- | -- | -3.76 | -- | -- | 0.424 | -- | 0.69 | 1493 | -- | -- |
| 332.34 | 0.851 | 11.2 | -- | -- | -- | -- | -- | 0.753 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 8 | 106.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 25 | 107.11 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 40 | 107.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 50 | 107.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 16 |
| 133 | 111.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 18 |
| 164 | 111.91 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 169 | 111.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 179 | 112.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 181 | 112.09 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 193 | 112.21 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 203 | 112.32 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 20 |
| 206 | 112.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 210 | 112.58 | radiation | 1 | 1440 | > th | dose independent | sin | 21 | NA |
| 211 | 112.62 | radiation | 1 | 1440 | < th | dose independent | sin | 21 | NA |
| 285 | 113.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 290 | 113.85 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 305 | 113.93 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 9 |
| 316 | 113.98 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 325 | 114.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 411 | 114.96 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 416 | 115.17 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 418 | 115.23 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 501 | 117.80 | wind | 5 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 521 | 118.24 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 528 | 118.58 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 7 |
| 558 | 119.10 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 14 |
| 610 | 119.80 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 711 | 120.80 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 18 |
| 756 | 120.90 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 760 | 120.91 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 780 | 121.01 | temperature | 25 | 1440 | > th | dose independent | sin | 20 | NA |
| 786 | 121.08 | wind | 7 | 43200 | < th | dose independent | sin | 20 | NA |
| 787 | 121.08 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 833 | 121.09 | wind | 7 | 43200 | > th | dose independent | sin | 20 | NA |
| 914 | 121.71 | temperature | 25 | 1440 | < th | dose independent | sin | 20 | NA |