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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0589400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to I-box binding factor (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.22 (0.0601) R2 : 0.766
β1 : -7.91 (0.226) R2dD : 0.713 R2D : 0.624
β2 : 1.54 (0.149) R2dC : 0.0539 R2C : 0.0304
β3 : 0.569 (0.324) R2dE : 0.00285 R2E : 0.0171
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.16 (1.38) R2dD*E : 0.0419 R2D*E : 0.0141
γ1 : -0.82 (0.131) R2dN8 : 0.0285 R2N8 : -0.034
σ : 1.11
deviance : 563.78
__
_____
C
peak time of C : 3.6
E
wheather : atmosphere
threshold : 1002
memory length : 9424
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
562.46 1.11 7.22 -7.95 1.52 0.549 -0.73 9.12 -0.81 3.5 1002 9230 -- --
603.46 1.14 7.18 -7.54 1.6 1.65 -1.14 -- -0.899 3.67 999.8 11397 -- --
563.78 1.11 7.22 -7.91 1.54 0.569 -- 9.16 -0.82 3.6 1002 9424 -- --
597.18 1.14 7.16 -7.38 1.51 2.13 -- -- -0.921 3.65 999.7 11423 -- --
693.27 1.23 7.22 -7.88 -- 0.669 -- 8.97 -0.785 -- 1002 9438 -- --
699.36 1.24 7.11 -7.8 1.55 -- -0.635 -- -0.712 3.52 -- -- -- --
700.43 1.24 7.11 -7.79 1.55 -- -- -- -0.709 3.65 -- -- -- --
724.99 1.25 7.15 -7.3 -- 2.2 -- -- -0.86 -- 999.6 11423 -- --
1960.72 2.06 7.06 -- 1.24 2.89 -- -- -0.245 3.99 999.2 12737 -- --
833.82 1.35 7.11 -7.72 -- -- -- -- -0.667 -- -- -- -- --
2297.98 2.24 6.91 -- 1.4 -- -- -- 0.159 3.7 -- -- -- --
2038.47 2.1 7.03 -- -- 3.76 -- -- -0.314 -- 999.2 12765 -- --
2406.2 2.29 6.92 -- -- -- -- -- 0.189 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 550.11 atmosphere 995.0 14400 > th dose independent rect. 10 4
3 554.53 atmosphere 995.0 14400 > th dose independent rect. 8 6
4 554.95 temperature 20.0 270 > th dose independent rect. 24 19
11 563.14 atmosphere 995.0 14400 > th dose independent rect. 12 2
16 566.45 wind 5.0 14400 > th dose independent rect. 15 1
17 568.14 atmosphere 1000.0 90 > th dose independent rect. 2 17
19 568.35 precipitation 0.1 270 < th dose independent rect. 5 9
20 568.35 precipitation 0.1 270 < th dose dependent rect. 5 9
22 568.59 humidity 50.0 270 > th dose independent rect. 5 19
23 568.92 wind 9.0 270 < th dose independent rect. 5 9
24 569.09 temperature 10.0 270 > th dose independent rect. 5 9
25 569.09 atmosphere 995.0 270 > th dose independent rect. 5 9
26 569.09 atmosphere 1015.0 270 < th dose independent rect. 5 9
27 569.09 temperature 10.0 270 > th dose independent rect. 14 15
29 569.32 humidity 50.0 270 > th dose independent rect. 6 17
30 569.42 atmosphere 1000.0 10 > th dose independent rect. 3 17
32 569.70 wind 5.0 14400 < th dose independent rect. 15 1
33 570.48 atmosphere 1005.0 14400 > th dose independent rect. 23 9
35 570.55 atmosphere 1005.0 14400 < th dose independent rect. 24 8
40 571.02 humidity 80.0 270 > th dose independent rect. 24 8
41 571.04 atmosphere 995.0 14400 > th dose independent rect. 2 13
58 571.66 atmosphere 995.0 14400 > th dose independent rect. 6 9
77 572.18 atmosphere 995.0 14400 < th dose independent rect. 3 12
78 572.21 atmosphere 995.0 14400 < th dose independent rect. 21 19
87 572.33 radiation 40.0 270 < th dose independent rect. 14 15
90 572.35 atmosphere 995.0 14400 > th dose independent sin 5 NA
94 572.39 atmosphere 995.0 14400 < th dose dependent rect. 3 13
103 572.51 atmosphere 995.0 14400 > th dose independent rect. 19 21
104 572.54 humidity 50.0 270 > th dose independent rect. 5 9
105 572.54 atmosphere 995.0 14400 > th dose independent rect. 21 19
127 572.94 atmosphere 1005.0 14400 > th dose independent rect. 7 1
137 573.19 radiation 40.0 270 < th dose dependent rect. 23 10
150 573.44 wind 5.0 14400 > th dose independent rect. 13 5
156 573.52 atmosphere 995.0 14400 < th dose dependent sin 2 NA
164 573.70 atmosphere 995.0 14400 < th dose independent sin 4 NA
175 573.81 atmosphere 1005.0 14400 < th dose independent rect. 24 1
181 573.88 atmosphere 1005.0 14400 < th dose independent rect. 6 1
203 574.09 wind 5.0 14400 < th dose independent rect. 13 3
217 574.29 atmosphere 1005.0 14400 > th dose independent rect. 23 3
231 574.53 wind 5.0 14400 < th dose independent rect. 11 7
235 574.56 atmosphere 995.0 14400 < th dose dependent rect. 3 20
236 574.56 atmosphere 995.0 14400 < th dose dependent rect. 5 20
238 574.58 atmosphere 995.0 14400 < th dose dependent rect. 14 11
277 574.76 precipitation 0.1 270 < th dose independent rect. 14 15
278 574.76 precipitation 0.1 270 < th dose dependent rect. 14 15
310 574.92 atmosphere 995.0 14400 < th dose dependent sin 19 NA
336 575.06 atmosphere 995.0 14400 < th dose dependent rect. 14 8
372 575.37 humidity 70.0 90 > th dose independent rect. 19 7
376 575.43 temperature 20.0 10 > th dose independent rect. 3 17
404 575.62 atmosphere 995.0 14400 > th dose independent rect. 10 12
407 575.63 atmosphere 995.0 14400 > th dose independent rect. 8 14
426 575.78 atmosphere 995.0 14400 > th dose independent rect. 12 10
438 575.88 atmosphere 995.0 14400 < th dose independent rect. 14 1
448 575.88 atmosphere 995.0 14400 < th dose dependent rect. 15 1
462 575.92 atmosphere 995.0 270 > th dose independent rect. 14 15
479 576.01 atmosphere 995.0 14400 > th dose independent rect. 1 23
480 576.02 atmosphere 995.0 14400 > th dose independent rect. 1 21
481 576.03 atmosphere 995.0 14400 < th dose independent rect. 14 8
533 576.18 atmosphere 995.0 14400 > th dose independent rect. 23 23
543 576.20 atmosphere 995.0 14400 > th dose independent rect. 11 23
548 576.22 atmosphere 995.0 14400 > th dose independent no NA NA
549 576.22 atmosphere 995.0 14400 > th dose independent rect. 11 20
553 576.22 atmosphere 995.0 14400 > th dose independent rect. 14 23
558 576.23 atmosphere 995.0 14400 > th dose independent rect. 9 22
629 576.38 atmosphere 995.0 14400 > th dose independent rect. 15 1
645 576.43 wind 5.0 14400 > th dose dependent rect. 14 2
650 576.47 radiation 1.0 14400 < th dose dependent rect. 23 1
694 576.69 atmosphere 1005.0 14400 > th dose independent sin 9 NA
705 576.70 precipitation 0.1 10 < th dose independent rect. 20 7
706 576.70 precipitation 0.1 10 < th dose dependent rect. 20 7
707 576.72 atmosphere 995.0 14400 < th dose independent no NA NA
708 576.72 atmosphere 995.0 14400 < th dose independent rect. 14 16
765 576.78 atmosphere 995.0 14400 < th dose independent rect. 1 23
772 576.81 atmosphere 995.0 14400 > th dose independent rect. 14 20
786 576.83 atmosphere 995.0 14400 > th dose independent rect. 14 17
904 577.10 radiation 10.0 10 < th dose dependent rect. 3 17
919 577.24 wind 9.0 270 < th dose independent rect. 14 15
940 577.31 atmosphere 1005.0 4320 < th dose dependent rect. 12 1
963 577.51 atmosphere 1005.0 4320 < th dose dependent rect. 10 4