Os01g0142500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os01g0142500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.71 | 0.351 | 9.72 | 1.84 | 0.569 | -2.37 | 2.02 | -1.76 | 0.254 | 15.5 | 2.172 | 729 | -- | -- |
| 56.51 | 0.35 | 9.7 | 1.89 | 0.209 | -2.07 | 1.25 | -- | 0.249 | 14.5 | 2.81 | 774 | -- | -- |
| 61.54 | 0.365 | 9.72 | 1.95 | 0.213 | -2.14 | -- | -0.503 | 0.278 | 16.3 | 2.392 | 795 | -- | -- |
| 60.99 | 0.364 | 9.71 | 1.92 | 0.243 | -2.18 | -- | -- | 0.269 | 16.2 | 2.4 | 795 | -- | -- |
| 61.47 | 0.365 | 9.71 | 1.92 | -- | -1.99 | -- | -0.00725 | 0.269 | -- | 2.756 | 826 | -- | -- |
| 77.31 | 0.412 | 9.7 | 1.81 | 1.38 | -- | 0.378 | -- | 0.157 | 6.74 | -- | -- | -- | -- |
| 77.64 | 0.413 | 9.7 | 1.81 | 1.38 | -- | -- | -- | 0.155 | 6.68 | -- | -- | -- | -- |
| 61.46 | 0.365 | 9.71 | 1.9 | -- | -1.99 | -- | -- | 0.261 | -- | 2.76 | 826 | -- | -- |
| 149.64 | 0.57 | 9.74 | -- | 0.178 | -1.69 | -- | -- | 0.0374 | 5.68 | 7.67 | 824 | -- | -- |
| 177.08 | 0.622 | 9.72 | 1.85 | -- | -- | -- | -- | 0.183 | -- | -- | -- | -- | -- |
| 164.33 | 0.6 | 9.74 | -- | 1.4 | -- | -- | -- | -0.0465 | 6.6 | -- | -- | -- | -- |
| 150.48 | 0.571 | 9.75 | -- | -- | -1.81 | -- | -- | 0.0478 | -- | 7.72 | 813 | -- | -- |
| 266.95 | 0.763 | 9.77 | -- | -- | -- | -- | -- | -0.0218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.99 | radiation | 20 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 7 | 55.85 | radiation | 40 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 10 | 56.01 | radiation | 20 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 12 | 56.19 | radiation | 10 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 21 | 56.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 18 |
| 28 | 56.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 17 |
| 29 | 56.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 17 |
| 67 | 57.53 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 107 | 58.01 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 7 |
| 112 | 58.07 | radiation | 20 | 270 | < th | dose independent | rect. | 15 | 16 |
| 119 | 58.14 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 131 | 58.26 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 21 |
| 133 | 58.28 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 22 |
| 146 | 58.38 | radiation | 1 | 720 | < th | dose dependent | sin | 15 | NA |
| 151 | 58.41 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 173 | 58.62 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 179 | 58.65 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 20 |
| 187 | 58.72 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 209 | 58.90 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 17 |
| 218 | 58.94 | radiation | 1 | 270 | > th | dose independent | sin | 0 | NA |
| 220 | 58.95 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 15 |
| 243 | 59.09 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 244 | 59.09 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 245 | 59.09 | radiation | 10 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 253 | 59.13 | radiation | 1 | 720 | < th | dose independent | sin | 15 | NA |
| 266 | 59.18 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 277 | 59.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 18 |
| 280 | 59.19 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 353 | 59.27 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 368 | 59.32 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 375 | 59.33 | radiation | 10 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 396 | 59.38 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 10 |
| 415 | 59.43 | humidity | 50 | 270 | > th | dose independent | rect. | 16 | 15 |
| 418 | 59.44 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 431 | 59.45 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 465 | 59.55 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 471 | 59.56 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 477 | 59.58 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 13 |
| 496 | 59.63 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 9 |
| 507 | 59.67 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 11 |
| 534 | 59.76 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 553 | 59.80 | radiation | 10 | 1440 | < th | dose independent | rect. | 23 | 6 |
| 589 | 59.88 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 606 | 59.93 | radiation | 1 | 270 | > th | dose independent | rect. | 7 | 10 |
| 631 | 59.99 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 14 |
| 673 | 60.07 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 23 |
| 729 | 60.20 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 23 |
| 754 | 60.27 | radiation | 1 | 720 | < th | dose independent | rect. | 19 | 23 |
| 757 | 60.28 | radiation | 10 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 780 | 60.34 | radiation | 20 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 781 | 60.34 | temperature | 25 | 270 | < th | dose independent | rect. | 14 | 18 |
| 790 | 60.38 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 15 |
| 827 | 60.46 | wind | 9 | 270 | < th | dose independent | rect. | 7 | 10 |
| 880 | 60.60 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 15 |
| 941 | 60.72 | atmosphere | 995 | 270 | > th | dose independent | rect. | 16 | 15 |
| 981 | 60.84 | radiation | 10 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 994 | 60.88 | radiation | 1 | 720 | < th | dose dependent | sin | 1 | NA |
| 999 | 60.90 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 23 |
| 1000 | 60.91 | temperature | 10 | 270 | > th | dose independent | rect. | 7 | 9 |