Os05g0449900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os05g0449900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.45 | 0.476 | 10 | -0.238 | 1.16 | 0.921 | 0.137 | -0.31 | -0.064 | 8.41 | 79.11 | 1263 | -- | -- |
| 102.55 | 0.472 | 10 | -0.211 | 1.16 | 0.902 | 0.166 | -- | -0.0627 | 8.41 | 80 | 1262 | -- | -- |
| 102.51 | 0.472 | 10 | -0.236 | 1.16 | 0.923 | -- | -0.328 | -0.0652 | 8.44 | 79.04 | 1263 | -- | -- |
| 102.62 | 0.472 | 10 | -0.202 | 1.16 | 0.899 | -- | -- | -0.0622 | 8.45 | 80 | 1260 | -- | -- |
| 172.64 | 0.612 | 10.1 | -0.179 | -- | 0.871 | -- | -0.217 | -0.0666 | -- | 84.02 | 1397 | -- | -- |
| 120.78 | 0.515 | 10 | -0.0595 | 1.13 | -- | 0.269 | -- | -0.0986 | 7.91 | -- | -- | -- | -- |
| 120.98 | 0.515 | 10 | -0.0514 | 1.13 | -- | -- | -- | -0.0984 | 7.97 | -- | -- | -- | -- |
| 172.75 | 0.612 | 10.1 | -0.159 | -- | 0.852 | -- | -- | -0.0667 | -- | 84.56 | 1397 | -- | -- |
| 103.62 | 0.474 | 10 | -- | 1.16 | 0.876 | -- | -- | -0.0523 | 8.47 | 82.32 | 1260 | -- | -- |
| 190.58 | 0.645 | 10.1 | -0.04 | -- | -- | -- | -- | -0.0838 | -- | -- | -- | -- | -- |
| 121.05 | 0.515 | 10 | -- | 1.13 | -- | -- | -- | -0.0927 | 7.97 | -- | -- | -- | -- |
| 173.39 | 0.613 | 10.1 | -- | -- | 0.835 | -- | -- | -0.0615 | -- | 85 | 1397 | -- | -- |
| 190.62 | 0.644 | 10.1 | -- | -- | -- | -- | -- | -0.0794 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.03 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 2 | 98.31 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 24 | 99.55 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 9 |
| 29 | 99.71 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 8 |
| 46 | 100.31 | humidity | 80.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 75 | 101.01 | humidity | 70.0 | 720 | > th | dose independent | sin | 12 | NA |
| 87 | 101.14 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 93 | 101.21 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 96 | 101.24 | humidity | 80.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 97 | 101.24 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 105 | 101.38 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 11 |
| 106 | 101.38 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 23 | 15 |
| 122 | 101.56 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 128 | 101.58 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 6 | NA |
| 134 | 101.61 | temperature | 25.0 | 30 | < th | dose independent | rect. | 13 | 15 |
| 189 | 102.08 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 190 | 102.10 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 196 | 102.14 | radiation | 40.0 | 1440 | > th | dose dependent | sin | 12 | NA |
| 207 | 102.21 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 247 | 102.40 | radiation | 1.0 | 720 | < th | dose independent | rect. | 7 | 17 |
| 250 | 102.42 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 252 | 102.45 | wind | 1.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 263 | 102.51 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 274 | 102.56 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 17 | 11 |
| 276 | 102.57 | humidity | 90.0 | 720 | < th | dose independent | rect. | 18 | 5 |
| 294 | 102.65 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 314 | 102.72 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 325 | 102.80 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 16 |
| 326 | 102.80 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 327 | 102.80 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 333 | 102.83 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 334 | 102.83 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 352 | 102.89 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 360 | 102.91 | radiation | 1.0 | 720 | < th | dose independent | rect. | 11 | 14 |
| 393 | 103.02 | humidity | 50.0 | 720 | > th | dose dependent | sin | 17 | NA |
| 394 | 103.02 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 411 | 103.06 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 417 | 103.08 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 443 | 103.14 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 14 |
| 446 | 103.14 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 14 |
| 455 | 103.17 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 467 | 103.20 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 18 |
| 479 | 103.23 | wind | 3.0 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 492 | 103.27 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 19 |
| 555 | 103.47 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 2 | NA |
| 591 | 103.55 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 622 | 103.58 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 626 | 103.59 | radiation | 40.0 | 720 | < th | dose independent | rect. | 13 | 4 |
| 639 | 103.63 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 646 | 103.64 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 647 | 103.64 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 648 | 103.65 | wind | 5.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 668 | 103.70 | humidity | 90.0 | 720 | < th | dose independent | rect. | 18 | 3 |
| 672 | 103.72 | wind | 1.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 694 | 103.76 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 698 | 103.78 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 711 | 103.82 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 5 |
| 725 | 103.85 | wind | 3.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 732 | 103.88 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 734 | 103.88 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 758 | 103.90 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 6 | 11 |
| 759 | 103.90 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 11 | 14 |
| 768 | 103.93 | radiation | 30.0 | 720 | < th | dose independent | rect. | 14 | 10 |
| 790 | 103.99 | humidity | 70.0 | 720 | < th | dose independent | rect. | 18 | 14 |
| 797 | 104.00 | radiation | 20.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 799 | 104.00 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 802 | 104.00 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 19 |
| 823 | 104.05 | radiation | 20.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 831 | 104.06 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 19 |
| 836 | 104.08 | radiation | 1.0 | 30 | < th | dose independent | rect. | 21 | 21 |
| 853 | 104.10 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 854 | 104.10 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 13 | 5 |
| 860 | 104.11 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 13 | 22 |
| 864 | 104.12 | wind | 7.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 885 | 104.15 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 886 | 104.15 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 921 | 104.22 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 13 | 20 |
| 925 | 104.23 | radiation | 40.0 | 1440 | > th | dose dependent | sin | 8 | NA |
| 929 | 104.24 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 932 | 104.24 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 9 |