Os01g0853700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MCB1 protein.
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Os01g0853700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MCB1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.13 | 0.475 | 12 | -0.333 | 0.828 | 0.853 | -0.167 | -3.03 | -0.198 | 5.66 | 25.81 | 6308 | -- | -- |
| 105.88 | 0.479 | 11.9 | 0.473 | 0.804 | 0.842 | -0.062 | -- | -0.0948 | 5.53 | 22.79 | 7379 | -- | -- |
| 102.19 | 0.471 | 12 | -0.332 | 0.828 | 0.852 | -- | -3.03 | -0.198 | 5.63 | 25.81 | 6307 | -- | -- |
| 105.72 | 0.479 | 11.9 | 0.466 | 0.776 | 0.81 | -- | -- | -0.0804 | 5.54 | 22.6 | 7399 | -- | -- |
| 134.52 | 0.54 | 12 | -0.346 | -- | 0.848 | -- | -2.96 | -0.223 | -- | 25.23 | 7080 | -- | -- |
| 125.84 | 0.526 | 11.9 | 0.949 | 0.792 | -- | -0.031 | -- | 0.253 | 5.43 | -- | -- | -- | -- |
| 125.85 | 0.525 | 11.9 | 0.949 | 0.792 | -- | -- | -- | 0.253 | 5.43 | -- | -- | -- | -- |
| 136.44 | 0.544 | 11.9 | 0.497 | -- | 0.818 | -- | -- | -0.07 | -- | 22.8 | 5688 | -- | -- |
| 105.88 | 0.479 | 11.9 | -- | 0.783 | 1.13 | -- | -- | -0.104 | 5.47 | 19.51 | 16044 | -- | -- |
| 158.48 | 0.588 | 11.9 | 0.976 | -- | -- | -- | -- | 0.273 | -- | -- | -- | -- | -- |
| 149.6 | 0.572 | 11.9 | -- | 0.808 | -- | -- | -- | 0.148 | 5.38 | -- | -- | -- | -- |
| 137.02 | 0.545 | 11.9 | -- | -- | 1.24 | -- | -- | -0.106 | -- | 19.61 | 11709 | -- | -- |
| 183.61 | 0.632 | 11.9 | -- | -- | -- | -- | -- | 0.165 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.01 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 97.02 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 4 | 97.26 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 8 | 97.79 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 10 | 98.00 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 11 | 98.01 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 15 | 98.16 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 16 | 98.20 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 17 | 98.22 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 19 | 98.32 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 33 | 98.75 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 6 |
| 40 | 98.85 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 6 |
| 67 | 98.97 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 86 | 99.03 | radiation | 20 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 90 | 99.07 | radiation | 20 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 93 | 99.08 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 17 |
| 124 | 99.18 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 10 |
| 146 | 99.23 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 151 | 99.23 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 11 |
| 160 | 99.27 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 10 |
| 163 | 99.28 | radiation | 20 | 43200 | < th | dose independent | sin | 9 | NA |
| 168 | 99.29 | humidity | 70 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 172 | 99.30 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 199 | 99.34 | humidity | 70 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 213 | 99.39 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 300 | 99.54 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 436 | 99.63 | wind | 5 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 543 | 99.74 | humidity | 60 | 43200 | < th | dose independent | rect. | 23 | 14 |
| 586 | 99.78 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 652 | 99.87 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 12 |
| 673 | 99.88 | radiation | 10 | 43200 | > th | dose dependent | sin | 9 | NA |
| 709 | 99.91 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 13 |
| 865 | 100.02 | wind | 5 | 14400 | > th | dose dependent | rect. | 5 | 11 |
| 940 | 100.08 | radiation | 30 | 43200 | < th | dose dependent | rect. | 8 | 1 |