Os08g0151000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MCB1 protein.
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Os08g0151000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MCB1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.49 | 0.347 | 10.6 | 0.15 | 1.16 | 0.476 | 0.186 | 1.73 | 0.294 | 1.4 | 0.2918 | 5370 | -- | -- |
| 53.19 | 0.34 | 10.7 | 0.0552 | 1.18 | 0.831 | 0.294 | -- | 0.312 | 1.41 | 0.6985 | 16969 | -- | -- |
| 54.63 | 0.344 | 10.6 | 0.148 | 1.16 | 0.482 | -- | 1.72 | 0.295 | 1.4 | 0.2951 | 5368 | -- | -- |
| 53.55 | 0.341 | 10.7 | 0.0339 | 1.18 | 0.828 | -- | -- | 0.312 | 1.43 | 0.76 | 16874 | -- | -- |
| 136.32 | 0.544 | 10.6 | 0.242 | -- | 0.277 | -- | 2.53 | 0.311 | -- | 0.4147 | 5229 | -- | -- |
| 69.52 | 0.391 | 10.7 | 0.375 | 1.17 | -- | 0.309 | -- | 0.229 | 1.43 | -- | -- | -- | -- |
| 69.91 | 0.392 | 10.7 | 0.364 | 1.17 | -- | -- | -- | 0.227 | 1.42 | -- | -- | -- | -- |
| 135.81 | 0.543 | 10.7 | 0.125 | -- | 0.895 | -- | -- | 0.28 | -- | 0.927 | 2308 | -- | -- |
| 53.53 | 0.341 | 10.7 | -- | 1.18 | 0.836 | -- | -- | 0.304 | 1.43 | 0.7767 | 16970 | -- | -- |
| 154.61 | 0.581 | 10.7 | 0.411 | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
| 73.41 | 0.401 | 10.7 | -- | 1.18 | -- | -- | -- | 0.187 | 1.43 | -- | -- | -- | -- |
| 136.05 | 0.543 | 10.7 | -- | -- | 0.958 | -- | -- | 0.307 | -- | 0.9309 | 2337 | -- | -- |
| 159.06 | 0.589 | 10.7 | -- | -- | -- | -- | -- | 0.207 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.17 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 2 | 52.75 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 3 | 53.01 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 4 | 53.06 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 7 | 53.23 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 23 | 53.34 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 29 | 53.36 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 13 |
| 32 | 53.38 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 10 |
| 36 | 53.43 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 23 | 20 |
| 37 | 53.45 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 18 |
| 46 | 53.70 | humidity | 60.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 49 | 53.76 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 66 | 53.85 | humidity | 60.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 67 | 53.86 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 68 | 53.86 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 69 | 53.89 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 71 | 53.98 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 88 | 54.06 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 14 |
| 92 | 54.07 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 12 |
| 101 | 54.08 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 10 |
| 109 | 54.10 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 128 | 54.15 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 19 | NA |
| 148 | 54.19 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 18 |
| 152 | 54.20 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 16 |
| 160 | 54.22 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 161 | 54.22 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 170 | 54.23 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 181 | 54.24 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 11 |
| 192 | 54.26 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 1 | NA |
| 198 | 54.28 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 6 |
| 199 | 54.28 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 6 |
| 203 | 54.30 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 204 | 54.30 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 205 | 54.30 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 207 | 54.31 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 6 |
| 232 | 54.43 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 15 |
| 254 | 54.51 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 15 |
| 257 | 54.51 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 15 |
| 306 | 54.71 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 312 | 54.73 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 313 | 54.73 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 6 |
| 392 | 54.89 | temperature | 25.0 | 720 | < th | dose independent | rect. | 7 | 2 |
| 396 | 54.89 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 14 |
| 401 | 54.89 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 14 |
| 408 | 54.90 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 14 |
| 446 | 54.93 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 10 | 12 |
| 451 | 54.93 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 10 | 12 |
| 457 | 54.94 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 12 |
| 675 | 55.16 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 686 | 55.18 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 20 | NA |
| 689 | 55.18 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 20 | NA |
| 692 | 55.19 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 20 | NA |
| 948 | 55.49 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 12 | NA |
| 949 | 55.49 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 956 | 55.50 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 16 | 17 |
| 958 | 55.50 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 966 | 55.51 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 7 |