Os10g0562100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os10g0562100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.13 | 0.333 | 13.7 | -0.838 | 1.18 | 0.685 | 0.384 | -1.99 | -0.132 | 9.37 | 25.4 | 1387 | -- | -- |
| 54.1 | 0.343 | 13.7 | -0.374 | 1.19 | 0.563 | 0.505 | -- | 0.0426 | 9.19 | 22.5 | 6330 | -- | -- |
| 50.46 | 0.331 | 13.7 | -0.795 | 1.19 | 0.669 | -- | -1.95 | -0.122 | 9.36 | 25.6 | 1388 | -- | -- |
| 55 | 0.345 | 13.7 | -0.366 | 1.18 | 0.566 | -- | -- | 0.0398 | 9.24 | 22.4 | 6210 | -- | -- |
| 131.46 | 0.534 | 13.8 | -0.771 | -- | 0.619 | -- | -1.88 | -0.0855 | -- | 25.6 | 1423 | -- | -- |
| 63.28 | 0.373 | 13.6 | -0.0506 | 1.17 | -- | 0.499 | -- | 0.267 | 9.14 | -- | -- | -- | -- |
| 64.14 | 0.375 | 13.6 | -0.0324 | 1.17 | -- | -- | -- | 0.268 | 9.19 | -- | -- | -- | -- |
| 124.47 | 0.522 | 13.7 | -0.219 | -- | 0.521 | -- | -- | 0.107 | -- | 22.4 | 6210 | -- | -- |
| 57.1 | 0.352 | 13.7 | -- | 1.18 | 0.417 | -- | -- | 0.133 | 9.28 | 23.1 | 5250 | -- | -- |
| 142.91 | 0.559 | 13.7 | -0.0363 | -- | -- | -- | -- | 0.274 | -- | -- | -- | -- | -- |
| 64.16 | 0.375 | 13.6 | -- | 1.17 | -- | -- | -- | 0.271 | 9.19 | -- | -- | -- | -- |
| 125.67 | 0.524 | 13.7 | -- | -- | 0.492 | -- | -- | 0.139 | -- | 22.4 | 6210 | -- | -- |
| 142.95 | 0.558 | 13.7 | -- | -- | -- | -- | -- | 0.278 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.68 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 3 | 48.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 14 | 48.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 35 | 48.84 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 48 | 49.04 | radiation | 1 | 1440 | < th | dose dependent | sin | 17 | NA |
| 78 | 49.28 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 5 |
| 80 | 49.30 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 100 | 49.54 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 14 |
| 110 | 49.63 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 114 | 49.69 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 116 | 49.69 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 125 | 49.76 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 11 |
| 126 | 49.76 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 11 |
| 127 | 49.76 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 13 |
| 132 | 49.78 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 133 | 49.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 14 |
| 136 | 49.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 18 |
| 137 | 49.79 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 141 | 49.79 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 151 | 49.80 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 153 | 49.80 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 173 | 49.83 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 181 | 49.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 5 |
| 186 | 49.87 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 213 | 49.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 231 | 49.94 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 252 | 49.97 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 340 | 50.08 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 351 | 50.10 | temperature | 25 | 1440 | > th | dose dependent | sin | 15 | NA |
| 355 | 50.11 | radiation | 1 | 1440 | < th | dose independent | sin | 17 | NA |
| 356 | 50.11 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 361 | 50.12 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 366 | 50.13 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 393 | 50.16 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 407 | 50.20 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 419 | 50.21 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 426 | 50.22 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 440 | 50.23 | humidity | 90 | 43200 | > th | dose dependent | sin | 16 | NA |
| 469 | 50.27 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 476 | 50.28 | radiation | 1 | 1440 | > th | dose independent | sin | 17 | NA |
| 519 | 50.34 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 532 | 50.35 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 6 |
| 612 | 50.45 | humidity | 90 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 625 | 50.47 | humidity | 90 | 43200 | > th | dose independent | sin | 16 | NA |
| 639 | 50.48 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 674 | 50.51 | humidity | 90 | 43200 | < th | dose independent | sin | 16 | NA |
| 704 | 50.54 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 813 | 50.66 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 858 | 50.70 | humidity | 90 | 43200 | < th | dose independent | rect. | 11 | 17 |
| 976 | 50.78 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 1 |