BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0462700 Os09g0462700|AK067260
(441 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0462700 Similar to RNA Binding Protein 47 649 0.0
Os04g0449900 Similar to RNA Binding Protein 47 476 e-134
Os03g0569900 Similar to RNA Binding Protein 45 373 e-103
Os03g0174100 Similar to RNA Binding Protein 45 367 e-102
Os04g0625800 Similar to RNA Binding Protein 45 347 1e-95
Os02g0567900 Similar to RNA Binding Protein 47 343 1e-94
Os07g0615400 Similar to Oligouridylate binding protein 137 1e-32
Os08g0520300 Similar to Oligouridylate binding protein 135 5e-32
Os03g0278500 Polyadenylate binding protein, human types 1, ... 115 5e-26
Os09g0115400 Similar to Poly(A)-binding protein 113 3e-25
Os07g0516900 Similar to RNA Binding Protein 45 108 8e-24
Os04g0504800 Similar to Poly(A)-binding protein 108 1e-23
Os08g0314800 Similar to Poly(A)-binding protein 107 2e-23
AK108879 105 7e-23
AK119744 99 6e-21
Os07g0631900 RNA-binding region RNP-1 (RNA recognition moti... 93 4e-19
Os04g0682400 RNA-binding region RNP-1 (RNA recognition moti... 91 2e-18
Os10g0457000 RNA-binding region RNP-1 (RNA recognition moti... 87 3e-17
Os08g0557100 Similar to Nucleic acid-binding protein precursor 86 5e-17
Os03g0376600 Similar to 29 kDa ribonucleoprotein, chloropla... 83 4e-16
Os09g0565200 Similar to Nucleic acid-binding protein precursor 81 1e-15
Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloropla... 79 6e-15
Os08g0567200 RNA-binding region RNP-1 (RNA recognition moti... 71 2e-12
Os07g0158300 Similar to RNA binding protein 70 2e-12
Os02g0622500 RNA-binding region RNP-1 (RNA recognition moti... 70 2e-12
Os04g0611500 RNA-binding region RNP-1 (RNA recognition moti... 69 7e-12
Os07g0584500 RNA-binding region RNP-1 (RNA recognition moti... 66 4e-11
Os10g0151800 RNA-binding region RNP-1 (RNA recognition moti... 66 4e-11
Os11g0637700 RNA-binding region RNP-1 (RNA recognition moti... 66 5e-11
>Os09g0462700 Similar to RNA Binding Protein 47
Length = 441
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/333 (94%), Positives = 315/333 (94%)
Query: 109 GGQEENKTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAA 168
GGQEENKTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAA
Sbjct: 109 GGQEENKTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAA 168
Query: 169 AEKVLEGFAGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETF 228
AEKVLEGFAGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETF
Sbjct: 169 AEKVLEGFAGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETF 228
Query: 229 SKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPR 288
SKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPR
Sbjct: 229 SKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPR 288
Query: 289 KTSGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIPVGKQCG 348
KTSGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIPVGKQCG
Sbjct: 289 KTSGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIPVGKQCG 348
Query: 349 FVQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQLRSDNGSQWNNGMYYAASPFY 408
FVQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQLRSDNGSQWNNGMYYAASPFY
Sbjct: 349 FVQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQLRSDNGSQWNNGMYYAASPFY 408
Query: 409 SGYGYPAPFXXXXXXXXXXXXXXXXXXNQQQVS 441
SGYGYPAPF NQQQVS
Sbjct: 409 SGYGYPAPFPADPGMYAAAYGAYPFYGNQQQVS 441
>Os04g0449900 Similar to RNA Binding Protein 47
Length = 387
Score = 476 bits (1224), Expect = e-134, Method: Compositional matrix adjust.
Identities = 226/307 (73%), Positives = 272/307 (88%), Gaps = 3/307 (0%)
Query: 110 GQEENKTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAA 169
G EENKTIWVGDL YWMDENYLHSCFG +GEVV IKVIRN+QTGQSEGYGFVEFYSH +A
Sbjct: 60 GCEENKTIWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFYSHGSA 119
Query: 170 EKVLEGFAGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETFS 229
EK L+ F GH+MPNTD+PF++NWAS+SMG++RS++ASD+SIFVGDLA+DV D L+E F+
Sbjct: 120 EKALQNFTGHVMPNTDRPFKLNWASYSMGEKRSEVASDYSIFVGDLAADVTDEMLMELFA 179
Query: 230 KRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRK 289
+Y SVKGAKV+IDANTGRS+GYGFVRFGDDN+K+HAMTEMNG YCSTRP+RIGPATPR+
Sbjct: 180 NKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMTEMNGAYCSTRPIRIGPATPRR 239
Query: 290 TSGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIPVGKQCGF 349
+SG SG + + SDGD TN TV+VGGLDPNVSED+LR+ F++YG+++SVKIP+GKQCGF
Sbjct: 240 SSGDSG-SSTPGHSDGDSTNRTVYVGGLDPNVSEDELRKAFAKYGDVASVKIPLGKQCGF 298
Query: 350 VQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQLRSDNGSQWNNGMYYAASPFYS 409
VQFV R +AE+ALQGLNGS IGKQ VRLSWGR+P++KQ R+D+GS+ NN MYY +PFY
Sbjct: 299 VQFVSRTDAEEALQGLNGSVIGKQAVRLSWGRSPSHKQSRADSGSRRNN-MYY-GTPFYG 356
Query: 410 GYGYPAP 416
GYGY +P
Sbjct: 357 GYGYASP 363
>Os03g0569900 Similar to RNA Binding Protein 45
Length = 402
Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/311 (57%), Positives = 232/311 (74%), Gaps = 7/311 (2%)
Query: 112 EENKTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEK 171
+E +T+W+GDL +WM+ENYL++CF GE+++ K+IRNKQTGQ EGYGF+EF SHA AE+
Sbjct: 64 DEVRTLWIGDLQFWMEENYLYNCFSQAGELISAKIIRNKQTGQPEGYGFIEFGSHAIAEQ 123
Query: 172 VLEGFAGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETFSKR 231
VL+G+ G +MPN +Q F++NWA+ G++R D SD++IFVGDLASDV D L +TF
Sbjct: 124 VLQGYNGQMMPNGNQVFKLNWATSGAGEKRGDDGSDYTIFVGDLASDVTDLILQDTFKAH 183
Query: 232 YSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRK-T 290
Y SVKGAKVV D +TGRSKGYGFV+FGD +E+T AMTEMNG YCS+RPMRIGPA+ +K
Sbjct: 184 YQSVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEMNGQYCSSRPMRIGPASNKKNI 243
Query: 291 SGTSGPTGS-----AARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIPVGK 345
G P+ + SD D NTTVFVGGLDP+V+++ L+Q FS YGE+ VKIPVGK
Sbjct: 244 GGQQQPSATYQNTQGTDSDSDPNNTTVFVGGLDPSVTDEVLKQAFSPYGELVYVKIPVGK 303
Query: 346 QCGFVQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQLRSDNGSQWNNGMYYAAS 405
+CGFVQ+ R +AE+A++ LNGS +G Q++RLSWGR+P NKQ + D +QWN G Y
Sbjct: 304 RCGFVQYSNRASAEEAIRMLNGSQLGGQSIRLSWGRSPGNKQPQQDQ-NQWNAGYYGYPP 362
Query: 406 PFYSGYGYPAP 416
Y YGY P
Sbjct: 363 QGYDPYGYVRP 373
>Os03g0174100 Similar to RNA Binding Protein 45
Length = 416
Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/300 (58%), Positives = 215/300 (71%), Gaps = 16/300 (5%)
Query: 112 EENKTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEK 171
EE +T+W+GDL YW DENYL++CF +TGE+ ++K+IRNK T EGYGF+EF SH AEK
Sbjct: 13 EEVRTLWIGDLQYWADENYLYNCFAHTGELQSVKIIRNKLTSLPEGYGFIEFISHEVAEK 72
Query: 172 VLEGFAGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETFSKR 231
VL+ + G MP T+ FR+NWASFS G+RR D DHSIFVGDLA DV D L ETF
Sbjct: 73 VLQTYNGTQMPGTEHTFRLNWASFSSGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRVS 132
Query: 232 YSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRKTS 291
Y SVKGAKVV D NTGRSKGYGFV+F D+NEK AMTEMNG+YCSTRPMRI A P+KT+
Sbjct: 133 YPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGMYCSTRPMRISAAIPKKTT 192
Query: 292 GTSGPTGSA----------------ARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGE 335
G+ G+A D D TNTT+F+G LD NV+ED+LRQ Q+GE
Sbjct: 193 GSQLQYGAAKAMYPAAGYAVPQVQPVLPDSDPTNTTIFIGNLDQNVTEDELRQICVQFGE 252
Query: 336 ISSVKIPVGKQCGFVQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQLRSDNGSQ 395
+ VKIP K CGFVQ+ R +AE+A+Q L+G+TIG+Q VRLSWGR+PA+KQ +S SQ
Sbjct: 253 LIYVKIPANKACGFVQYASRASAEEAVQRLHGTTIGQQVVRLSWGRSPASKQDQSAVWSQ 312
>Os04g0625800 Similar to RNA Binding Protein 45
Length = 425
Score = 347 bits (889), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 168/287 (58%), Positives = 216/287 (75%), Gaps = 6/287 (2%)
Query: 112 EENKTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEK 171
+E KT+W+GDL WMDE+Y+++CF TGEV ++K+IR+KQ+GQ +GYGFVEF S AAA++
Sbjct: 87 DEVKTLWIGDLQPWMDESYIYNCFAATGEVQSVKLIRDKQSGQLQGYGFVEFTSRAAADR 146
Query: 172 VLEGFAGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETFSKR 231
+L+ + G +MPN + FR+NWAS G++R D D++IFVGDLA+DV D L ETF
Sbjct: 147 ILQTYNGQMMPNVEMVFRLNWAS--AGEKRDD-TPDYTIFVGDLAADVTDYLLQETFRVH 203
Query: 232 YSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRKTS 291
Y SVKGAKVV D T RSKGYGFV+FGD E+ AMTEMNG+ CS+RPMRIGPA +KT+
Sbjct: 204 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMLCSSRPMRIGPAANKKTT 263
Query: 292 GTSG--PTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIPVGKQCGF 349
G P A+S+ D NTT+FVGGLDPNV+ED L+Q F+ YGE+ VKIPVGK+CGF
Sbjct: 264 GVQERVPNAQGAQSENDPNNTTIFVGGLDPNVTEDVLKQVFAPYGEVVHVKIPVGKRCGF 323
Query: 350 VQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQLRSDNGSQW 396
VQ+V R +AE AL L G+ IG Q VRLSWGR+ +NKQ + D+ +QW
Sbjct: 324 VQYVNRPSAEQALAVLQGTLIGGQNVRLSWGRSLSNKQPQHDS-NQW 369
>Os02g0567900 Similar to RNA Binding Protein 47
Length = 257
Score = 343 bits (881), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 166/237 (70%), Positives = 205/237 (86%), Gaps = 3/237 (1%)
Query: 181 MPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKV 240
MPNTD+ F++NWAS+SMG++R+++ASDHSIFVGDLA DV D L++ F+K+Y SVKGAKV
Sbjct: 1 MPNTDRAFKLNWASYSMGEKRAELASDHSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKV 60
Query: 241 VIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRKTSGTSGPTGSA 300
+IDANTGRS+GYGFVRFGDDN+KTHAMTEMNG YCSTRP+RIGPATPR++SG SG +
Sbjct: 61 IIDANTGRSRGYGFVRFGDDNDKTHAMTEMNGAYCSTRPIRIGPATPRRSSGDSG-SSPP 119
Query: 301 ARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIPVGKQCGFVQFVQRKNAED 360
+SD D TN T++VGGLDPN +ED+LR+ F++YG+++SVKIPVGKQCGFVQFV R +AE+
Sbjct: 120 RQSDSDSTNRTIYVGGLDPNATEDELRKAFAKYGDLASVKIPVGKQCGFVQFVNRPDAEE 179
Query: 361 ALQGLNGSTIGKQTVRLSWGRNPANKQLRSDNGSQWNNGMYYAASPFYSGYGYPAPF 417
ALQGLNGSTIGKQ VRLSWGR+PA+KQ R D+G + NGMYY +PFY GYGY +P
Sbjct: 180 ALQGLNGSTIGKQAVRLSWGRSPASKQSRGDSGHR-RNGMYY-GTPFYGGYGYASPL 234
>Os07g0615400 Similar to Oligouridylate binding protein
Length = 427
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 146/292 (50%), Gaps = 34/292 (11%)
Query: 115 KTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLE 174
++++VG++H + E L F TG V K+IR +++ YGFV++Y +A +
Sbjct: 65 RSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS----YGFVDYYDRRSAALSIL 120
Query: 175 GFAGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETFSKRYSS 234
G + Q R+NWA S +R D +IFVGDL+ +V D+ L FS YSS
Sbjct: 121 TLNGKQI--FGQLIRVNWAYAS--GQREDTTDHFNIFVGDLSPEVTDSALFAFFSG-YSS 175
Query: 235 VKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRKTSGTS 294
A+V+ D TGRS+GYGFV F + + A+ ++NG + +R +R AT ++G
Sbjct: 176 CSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATKGASNGEQ 235
Query: 295 GPTGSAARSDGDLTNT---------------------TVFVGGLDPNVSEDDLRQTFSQY 333
+ S ++ DLTN TV+VG L V++D L + F
Sbjct: 236 QTSDS--KNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQDVLHRLFHAL 293
Query: 334 --GEISSVKIPVGKQCGFVQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNP 383
G I V+I +GK GFV++ A A+Q NG +G + ++ SWG P
Sbjct: 294 GAGAIEEVRIQLGKGFGFVRYSNHAEAALAIQMGNGRILGGKPIKCSWGNKP 345
>Os08g0520300 Similar to Oligouridylate binding protein
Length = 447
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 146/295 (49%), Gaps = 36/295 (12%)
Query: 115 KTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLE 174
++++VG++H + E+ L F +G V K+IR +++ +GFV++Y +A +
Sbjct: 73 RSVYVGNVHPNVTESLLIEVFQSSGLVERCKLIRKEKSS----FGFVDYYDRRSAALAIM 128
Query: 175 GFAG-HIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETFSKRYS 233
G HI Q ++NWA S +R D + IFVGDL+S+VND TL FS Y
Sbjct: 129 TLHGRHI---CGQAIKVNWAYAST--QREDTSGHFHIFVGDLSSEVNDATLYACFSA-YP 182
Query: 234 SVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRK---- 289
S A+V+ D TGRS+GYGFV F + E A+TEM G + +R +R AT
Sbjct: 183 SCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATKNNAEEK 242
Query: 290 -----------TSGTSG--------PTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTF 330
T+G+S TGS + + TTV+VG L V+ D+L + F
Sbjct: 243 QETDNHNAVVLTNGSSSNPGMEASQDTGSKENPENNPDCTTVYVGNLGHEVNRDELHRHF 302
Query: 331 SQY--GEISSVKIPVGKQCGFVQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNP 383
G I V++ K GFV++ A A+Q NG + + ++ SWG P
Sbjct: 303 YNLGVGAIEEVRVQQDKGFGFVRYSNHGEAALAIQMANGLVVRGKPIKCSWGNKP 357
>Os03g0278500 Polyadenylate binding protein, human types 1, 2, 3, 4 family
protein
Length = 647
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 141/277 (50%), Gaps = 22/277 (7%)
Query: 116 TIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEG 175
++VGDLH + E +L FG G + +++V R+ T S YG+V + S A A LE
Sbjct: 39 ALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEK 98
Query: 176 FAGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETFSKRYSSV 235
++ D+P R+ W++ RRS + ++FV +L V++ +L E F K + +
Sbjct: 99 LNHSLI--LDKPIRVMWSNRDPDARRSGVG---NVFVKNLNDLVDNVSLQELFCK-FGDI 152
Query: 236 KGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRKTSGTSG 295
KV + + G S+GYGFV+F ++ +N + R + + AT K S S
Sbjct: 153 LSCKVAKNED-GTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHV--ATFIKKSERS- 208
Query: 296 PTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIP-----VGKQCGFV 350
++ D T +++ LD +++E+ ++ FSQYG + SVKI K GFV
Sbjct: 209 -------TNNDDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFV 261
Query: 351 QFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQ 387
F ++A+ A + +NG +G +T+ ++ + A ++
Sbjct: 262 SFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERK 298
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 140/313 (44%), Gaps = 28/313 (8%)
Query: 117 IWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEG- 175
++V +L+ +D L F G++++ KV +N + G S GYGFV+F +A+ ++
Sbjct: 128 VFVKNLNDLVDNVSLQELFCKFGDILSCKVAKN-EDGTSRGYGFVQFALQESADASIQNL 186
Query: 176 ----FAGHIMPNTDQPFRINWASFSMGDRRSDIASDH--SIFVGDLASDVNDTTLLETFS 229
F G +++ A+F RS D ++++ +L D+ + + FS
Sbjct: 187 NNSHFCGR---------QLHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFS 237
Query: 230 KRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRK 289
+ Y V K+ + + G SKG+GFV F + A MNG+ ++ + + A +
Sbjct: 238 Q-YGLVISVKI-MKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKA 295
Query: 290 TSGTSGPTGSAARSDGDLTNTT---VFVGGLDPNVSEDDLRQTFSQYGEISSVKIP---- 342
+ + +T + V++ ++ V +D LR+ F+++G I+S KI
Sbjct: 296 ERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEK 355
Query: 343 -VGKQCGFVQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQLRSDNGSQWNNGMY 401
+ K GFV + + A+ A+ + G + + ++ + ++ + + M
Sbjct: 356 GISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRKEERRAKLEQRFAELATMV 415
Query: 402 YAASPFYSGYGYP 414
A SP GYP
Sbjct: 416 GATSPVIPT-GYP 427
>Os09g0115400 Similar to Poly(A)-binding protein
Length = 662
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 131/257 (50%), Gaps = 21/257 (8%)
Query: 116 TIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEG 175
+++VGDL + + L F G VV+++V R+ T +S GY +V + S A A + LE
Sbjct: 41 SLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALEM 100
Query: 176 FAGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETFSKRYSSV 235
+ P +P RI +++ R+S A +IF+ +L +++ L +TF + ++
Sbjct: 101 L--NFTPINGKPIRIMYSNRDPSLRKSGTA---NIFIKNLDKSIDNKALYDTFCV-FGNI 154
Query: 236 KGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRKTSGTSG 295
KV DA +G SKGYGFV++ D A+ ++NG+ + + + +GP RK +
Sbjct: 155 LSCKVATDA-SGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFI-RKQERDNS 212
Query: 296 PTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIP-----VGKQCGFV 350
P G + V+V L N +EDDL++ F ++G I+S + K GFV
Sbjct: 213 P--------GQVKFNNVYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFGFV 264
Query: 351 QFVQRKNAEDALQGLNG 367
F +A A+Q LNG
Sbjct: 265 NFESPDDAAQAVQELNG 281
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 138/284 (48%), Gaps = 18/284 (6%)
Query: 117 IWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGF 176
I++ +L +D L+ F G +++ KV + +G+S+GYGFV++ AA+ ++
Sbjct: 130 IFIKNLDKSIDNKALYDTFCVFGNILSCKVATDA-SGESKGYGFVQYERDEAAQAAIDKL 188
Query: 177 AGHIMPNTDQPFRINWASFSMGDRRSDIASD---HSIFVGDLASDVNDTTLLETFSKRYS 233
G +M + ++ F R + ++++V +L+ + + L E F K +
Sbjct: 189 NGMLMNDK----KVYVGPFIRKQERDNSPGQVKFNNVYVKNLSENTTEDDLKEIFGK-FG 243
Query: 234 SVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPA---TPRKT 290
++ A VV+ GRSK +GFV F ++ A+ E+NG + +G A + R+
Sbjct: 244 TITSA-VVMREGDGRSKCFGFVNFESPDDAAQAVQELNGKKFDDKEWYVGRAQKKSEREM 302
Query: 291 SGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIP-----VGK 345
+ + NT +++ LD +V +D LR+ F++YG I+S K+ V +
Sbjct: 303 ELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSR 362
Query: 346 QCGFVQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQLR 389
GFV F ++A AL +N +G + + ++ + +++ R
Sbjct: 363 GSGFVAFKSAEDASRALAEMNSKMVGSKPLYVALAQRKEDRKAR 406
>Os07g0516900 Similar to RNA Binding Protein 45
Length = 92
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 59/79 (74%)
Query: 215 LASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVY 274
LASDV D+ L E F Y SV+GAKVV D TGRSKGYGFVRFGD+NE+T AMTEMNG
Sbjct: 1 LASDVTDSMLEEAFKTSYPSVRGAKVVFDKVTGRSKGYGFVRFGDENEQTRAMTEMNGAT 60
Query: 275 CSTRPMRIGPATPRKTSGT 293
STR MR+GPA +K GT
Sbjct: 61 LSTRQMRLGPAANKKNMGT 79
>Os04g0504800 Similar to Poly(A)-binding protein
Length = 659
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 134/262 (51%), Gaps = 23/262 (8%)
Query: 115 KTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLE 174
++++VGDL + ++ L+ F G+V++++V R+ + +S GY +V F + A + LE
Sbjct: 39 QSLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALE 98
Query: 175 GFAGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETFSKRYSS 234
+ P +P R+ +++ RRS A +IF+ +L ++ TL +TFS + +
Sbjct: 99 LL--NFAPLNGKPIRVMYSNRDPSSRRSGSA---NIFIKNLDKAIDHKTLHDTFSA-FGN 152
Query: 235 VKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRKTSGTS 294
+ KV D G+SKG+GFV++ A+ +NG+ + +P+ +GP ++ S
Sbjct: 153 ILSCKVATD-EMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENS 211
Query: 295 GPTGSAARSDGDLTN-TTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIPVG----KQC-G 348
D T VFV L + +++DL + F YG I+S I VG +C G
Sbjct: 212 ----------VDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFG 261
Query: 349 FVQFVQRKNAEDALQGLNGSTI 370
F+ F +A A++ LNG I
Sbjct: 262 FINFKSPDDAARAVEELNGKKI 283
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 136/282 (48%), Gaps = 18/282 (6%)
Query: 117 IWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGF 176
I++ +L +D LH F G +++ KV + + GQS+G+GFV++ AA+ ++
Sbjct: 129 IFIKNLDKAIDHKTLHDTFSAFGNILSCKVATD-EMGQSKGFGFVQYDKGEAAQSAIKSL 187
Query: 177 AGHIMPNTDQPFRINWASFSMGDRRS---DIASDHSIFVGDLASDVNDTTLLETFSKRYS 233
G ++ D+P + F R D +++FV +L+ L++ F Y
Sbjct: 188 NGMLI--NDKPVYV--GPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGA-YG 242
Query: 234 SVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPA---TPRKT 290
++ A +++ + G+S+ +GF+ F ++ A+ E+NG + + +G A + R+
Sbjct: 243 NITSAVIMVGMD-GKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREI 301
Query: 291 SGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIP-----VGK 345
S + +++ LD ++ +D L + FS YG+I+S KI V K
Sbjct: 302 ELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSK 361
Query: 346 QCGFVQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQ 387
GFV F R+ A AL +NG I + + +++ + +++
Sbjct: 362 GSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRK 403
>Os08g0314800 Similar to Poly(A)-binding protein
Length = 660
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 135/257 (52%), Gaps = 21/257 (8%)
Query: 116 TIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEG 175
+++VGDL + + L F G VV+++V R+ T S GY +V F S A A + LE
Sbjct: 40 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEM 99
Query: 176 FAGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETFSKRYSSV 235
+ P +P RI +++ R+S A +IF+ +L +++ L +TFS + ++
Sbjct: 100 L--NFTPINGKPIRIMYSNRDPSSRKSGAA---NIFIKNLDKSIDNKALYDTFSV-FGNI 153
Query: 236 KGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRKTSGTSG 295
KV + +G SKGYGFV+F + +A++++NG+ + + + +GP RK +
Sbjct: 154 LSCKVATEM-SGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFV-RKQEREN- 210
Query: 296 PTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIPV---GK-QC-GFV 350
G+ V+V L + +ED+L++ F ++G I+SV + GK +C GFV
Sbjct: 211 -------VSGNPKFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFV 263
Query: 351 QFVQRKNAEDALQGLNG 367
F +A A++ LNG
Sbjct: 264 NFENPDDAARAVEDLNG 280
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 19/172 (11%)
Query: 209 SIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMT 268
S++VGDL V D L + FS+ SV +V D NT S GY +V F + A+
Sbjct: 40 SLYVGDLDVSVQDAQLFDVFSQ-VGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALE 98
Query: 269 EMNGVYCSTRPMRIGPATPRKTSGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQ 328
+N + +P+RI + +S SG +F+ LD ++ L
Sbjct: 99 MLNFTPINGKPIRIMYSNRDPSSRKSG-------------AANIFIKNLDKSIDNKALYD 145
Query: 329 TFSQYGEISSVKIPV-----GKQCGFVQFVQRKNAEDALQGLNGSTIGKQTV 375
TFS +G I S K+ K GFVQF + A++A+ LNG + + V
Sbjct: 146 TFSVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKV 197
>AK108879
Length = 670
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 129/255 (50%), Gaps = 19/255 (7%)
Query: 117 IWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGF 176
++VG+LH + E L+ F G V +I+V R+ T +S GY +V F+S A E+ +E
Sbjct: 46 LYVGELHPDVTEAMLYEIFSQIGPVSSIRVCRDAITRRSLGYAYVNFHSPADCERAIESL 105
Query: 177 AGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETFSKRYSSVK 236
++ QP R+ W+ RRS + +IF+ +L +++ L +TFS + ++
Sbjct: 106 NYALI--KGQPCRLMWSQRDPALRRSGVG---NIFIKNLDKTIDNKALHDTFSA-FGNIL 159
Query: 237 GAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRKTSGTSGP 296
KVV D + G S+G+GFV + A+ ++NG+ + + +G RK
Sbjct: 160 SCKVVTD-DQGASRGFGFVHYETREAADLAIDKVNGMLLNGIKVFVGHHISRKER----- 213
Query: 297 TGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVKI---PVGKQ--CGFVQ 351
TN VF+ LD V++++L+ F +GEI S + GK GF+
Sbjct: 214 ISHLEELKAQFTN--VFIKNLDEAVTDEELQALFEPFGEIQSAILQRDESGKSRGFGFIN 271
Query: 352 FVQRKNAEDALQGLN 366
FV+ ++A+ A++ LN
Sbjct: 272 FVEHEDAQKAVEALN 286
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 135/288 (46%), Gaps = 20/288 (6%)
Query: 117 IWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGF 176
I++ +L +D LH F G +++ KV+ + Q G S G+GFV + + AA+ ++
Sbjct: 134 IFIKNLDKTIDNKALHDTFSAFGNILSCKVVTDDQ-GASRGFGFVHYETREAADLAIDKV 192
Query: 177 AGHIMPNTDQPFRINWASFSMGDRRSDI----ASDHSIFVGDLASDVNDTTLLETFSKRY 232
G ++ N + F S +R S + A ++F+ +L V D L F +
Sbjct: 193 NGMLL-NGIKVF--VGHHISRKERISHLEELKAQFTNVFIKNLDEAVTDEELQALFEP-F 248
Query: 233 SSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRKTSG 292
++ A + D +G+S+G+GF+ F + + A+ +N V + + + +G A +
Sbjct: 249 GEIQSAILQRD-ESGKSRGFGFINFVEHEDAQKAVEALNDVEVNGKRIFVGRAQKKSERT 307
Query: 293 TSGPTGSAARSDGDLTN---TTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIPVGKQ--- 346
A ++ ++V LD V+ED LR F+ +G ISS+++ V ++
Sbjct: 308 EELRRQFEALKLERMSKFHGVNLYVKNLDEMVTEDQLRMEFTPFGSISSLRVMVDEKGVS 367
Query: 347 --CGFVQFVQRKNAEDALQGLNGSTI-GKQT-VRLSWGRNPANKQLRS 390
GFV F + A A+ +NG + GK V L+ R+ QL +
Sbjct: 368 RGFGFVCFSAPEEAARAISEMNGRMVNGKPLYVALAQRRDERRAQLEA 415
>AK119744
Length = 746
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 134/271 (49%), Gaps = 21/271 (7%)
Query: 116 TIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEG 175
+++VG+L + E L F G+V +I+V R+ T +S GY +V + S EK LE
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 176 FAGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETFSKRYSSV 235
++ +P RI W+ R++ ++F+ +L +++ L +TF+ + ++
Sbjct: 109 LNYTVI--KGKPCRIMWSQRDPALRKT---GQGNVFIKNLDHAIDNKALHDTFAA-FGNI 162
Query: 236 KGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRKTSGTSG 295
KV D G SKGYGFV + +A+ +NG+ + + + +G P+K
Sbjct: 163 LSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER---- 217
Query: 296 PTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIPVGKQ-----CGFV 350
+ TN ++V +D +V++D+ R+ F ++G+I+S I +Q GFV
Sbjct: 218 -MSKFEEVKANFTN--IYVKNIDLDVTDDEFRELFEKHGDITSASIARDEQGKSRGFGFV 274
Query: 351 QFVQRKNAEDALQGLNGSTIGKQTVRLSWGR 381
+++ + A A++ LN + Q +L GR
Sbjct: 275 NYIKHEAASAAVEALNDTEFRGQ--KLYVGR 303
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 106/241 (43%), Gaps = 31/241 (12%)
Query: 117 IWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEG- 175
+++ +L + +D LH F G +++ KV ++ + G S+GYGFV + + AA ++
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 176 ----------FAGHIMPNTDQ--PFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTT 223
F GH +P ++ F A+F+ +I+V ++ DV D
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEVKANFT------------NIYVKNIDLDVTDDE 244
Query: 224 LLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIG 283
E F K + + A + D G+S+G+GFV + + A+ +N + + +G
Sbjct: 245 FRELFEK-HGDITSASIARD-EQGKSRGFGFVNYIKHEAASAAVEALNDTEFRGQKLYVG 302
Query: 284 PATP---RKTSGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVK 340
A R+ + +++ L+ +V ++ LR F+ +G I+S K
Sbjct: 303 RAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAK 362
Query: 341 I 341
+
Sbjct: 363 V 363
>Os07g0631900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 264
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 99/179 (55%), Gaps = 12/179 (6%)
Query: 113 ENKTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKV 172
E+ ++VG+L + +D L F G V ++V+ ++QTG+S G+GFV + A
Sbjct: 78 EDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAA 137
Query: 173 LEGFAGHIMPNTDQPFRIN---------WASFSMGDRRSDIASDHSIFVGDLASDVNDTT 223
+E F G+ +P R+N +A S S+ S + ++VG+LA V+++T
Sbjct: 138 VEQFNGYTF--QGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNST 195
Query: 224 LLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRI 282
L FS++ +V AKV+ D +GRS+G+GFV +G E +A++ ++GV R +R+
Sbjct: 196 LENLFSEQ-GTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRV 253
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 12/193 (6%)
Query: 204 IASDHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEK 263
A D +FVG+L V+ L F ++ SV+ +VV D TGRS+G+GFV E
Sbjct: 76 FAEDLKVFVGNLPFSVDSAQLAGLF-EQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEA 134
Query: 264 THAMTEMNGVYCSTRPMRI--GPATPRKTSGTSGPTGSAARSDGDLTNTTVFVGGLDPNV 321
A+ + NG RP+R+ GP PR P G + D ++ ++VG L V
Sbjct: 135 GAAVEQFNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFD---SSNKLYVGNLAWGV 191
Query: 322 SEDDLRQTFSQYGEISSVKIPVGKQC------GFVQFVQRKNAEDALQGLNGSTIGKQTV 375
L FS+ G + K+ ++ GFV + + +A+ L+G + + +
Sbjct: 192 DNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQI 251
Query: 376 RLSWGRNPANKQL 388
R++ + +Q
Sbjct: 252 RVTVAESKPRRQF 264
>Os04g0682400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 1008
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 134/286 (46%), Gaps = 27/286 (9%)
Query: 113 ENKTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKV 172
+N ++VG+L + + L F G++V +V+ + TG S+GYGFV++ A +
Sbjct: 291 DNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEA 350
Query: 173 LEGFAGHIMPNTDQPFRINWASFSMGD-----RRSDIASDHSIFVGDLASDVNDTTLLET 227
++ G ++ T R+ S + + +D+A ++V +L+ +N L+
Sbjct: 351 IKRMNGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMA---KLYVCNLSLSMNTDRLIHL 407
Query: 228 FSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIG---- 283
F + V AKV D TG SKGYGFV++ + A+ +NG R + +
Sbjct: 408 FLP-FGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGI 466
Query: 284 PAT--------PRKTSGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGE 335
P+T P T ++ + S R+ ++ + ++V + ++ L + F +G+
Sbjct: 467 PSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGK 526
Query: 336 ISSVKIPV------GKQCGFVQFVQRKNAEDALQGLNGSTIGKQTV 375
I+ ++ K GF++F ++A A+ +NG+ +G + +
Sbjct: 527 ITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMI 572
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 133/281 (47%), Gaps = 31/281 (11%)
Query: 117 IWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYS-HAAAEKVLEG 175
++V +L M+ + L F GEV KV ++ TG S+GYGFV++ S H AAE V+
Sbjct: 390 LYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIH- 448
Query: 176 FAGHIMPNTDQPFRINWASFSMGD---------RRSDIASDHS-----------IFVGDL 215
G ++ R++ ++ + R S + S + ++V ++
Sbjct: 449 LNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNM 508
Query: 216 ASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYC 275
S ++ L+E F + + A+VV D +T +KGYGF++F D T A+ MNG
Sbjct: 509 PSSIDTKKLVELFLP-FGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALV 567
Query: 276 STRPMRIGPATPRKTSGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGE 335
+ + R + + SA ++ D+ + +++ L +++ D + F+ +G+
Sbjct: 568 GGEMIIV-----RVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQ 622
Query: 336 ISSVKIPVGKQCGFVQFVQRKNAEDALQGLNGSTI-GKQTV 375
I+ K+ + + V + +A A+Q ++G + GK+ V
Sbjct: 623 IT--KVLMNLEYSLVWYADAPSATKAVQHMDGYMVEGKRLV 661
>Os10g0457000 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 355
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 8/183 (4%)
Query: 111 QEENKTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAE 170
+ ++ T +VG+L + E L F G VV + V +++ T +GYGFVEF S A+
Sbjct: 21 RNQDATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDAD 80
Query: 171 KVLEGFAGHIMPNTDQPFRINWASFSMGDRRS-DIASDHSIFVGDLASDVNDTTLLETFS 229
++ +++ +P R+N AS D++S D+ ++ +F+G+L DV++ L +TFS
Sbjct: 81 YAIKIL--NMIKLYGKPIRVNKAS---QDKKSLDVGAN--LFIGNLDPDVDEKLLYDTFS 133
Query: 230 KRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRK 289
V K++ D TG S+G+GFV + A+ MN + RP+ + A +
Sbjct: 134 AFGVIVTNPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMNNQHLCNRPITVSYAYKKD 193
Query: 290 TSG 292
T G
Sbjct: 194 TKG 196
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 109/244 (44%), Gaps = 38/244 (15%)
Query: 197 MGDRRSDIASDHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVR 256
+G ++ D + +VG+L V++ L E F + V V D T +GYGFV
Sbjct: 14 LGQHSAERNQDATTYVGNLDPQVSEELLWELFVQA-GPVVNVYVPKDRVTNLHQGYGFVE 72
Query: 257 FGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRKTSGTSGPTGSAARSDGDLTNTTVFVGG 316
F + + +A+ +N + +P+R+ A+ K S G +F+G
Sbjct: 73 FRSEEDADYAIKILNMIKLYGKPIRVNKASQDKKSLDVG--------------ANLFIGN 118
Query: 317 LDPNVSEDDLRQTFSQYGEI-SSVKIPVGKQC------GFVQFVQRKNAEDALQGLNGST 369
LDP+V E L TFS +G I ++ KI + GFV + ++++ A++ +N
Sbjct: 119 LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMNNQH 178
Query: 370 IGKQTVRLSWGRN----------PANKQLRSDN-GSQWN--NGMYYAASP---FYSGYGY 413
+ + + +S+ PA + L ++N GSQ N + M+ + P +G
Sbjct: 179 LCNRPITVSYAYKKDTKGERHGTPAERLLAANNPGSQKNRPHTMFASGPPTQGLANGAPV 238
Query: 414 PAPF 417
P PF
Sbjct: 239 PRPF 242
>Os08g0557100 Similar to Nucleic acid-binding protein precursor
Length = 194
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 8/180 (4%)
Query: 117 IWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGF 176
++VG+L Y +D L F G V +VI N++TGQS G+GFV + A+K +E
Sbjct: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
Query: 177 AGHIMPNTDQPFRINWASFSMGDRRS----DIASDHSIFVGDLASDVNDTTLLETFSKRY 232
+ + + +N A+ G R A +VG+L V+D+ LL+ FS+ +
Sbjct: 78 NRYDI--NGRLLNVNRAA-PRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSE-H 133
Query: 233 SSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRKTSG 292
V A VV D +GRS+G+GFV E A++ ++G RP+R+ A R G
Sbjct: 134 GEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQRG 193
>Os03g0376600 Similar to 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 265
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 6/169 (3%)
Query: 117 IWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGF 176
++VG+L + +D L F G V ++VI +K TG+S G+GFV S E +E F
Sbjct: 88 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQF 147
Query: 177 AGHIMPNTDQPFRINW---ASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETFSKRYS 233
G+I+ + R+N +R+ + ++VG+L+ V++ L FS
Sbjct: 148 NGYIL--DGRSLRVNSGPPPPREQSSQRAPRGEANRVYVGNLSWGVDNAALANLFSGE-G 204
Query: 234 SVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRI 282
V AKV+ D +GRS+G+GFV +G E +A++ ++G R +R+
Sbjct: 205 EVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRV 253
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 19/190 (10%)
Query: 207 DHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHA 266
D +FVG+L V+ L F ++ SV+ +V+ D TGRS+G+GFV E A
Sbjct: 85 DLRVFVGNLPFSVDSAQLAGLF-EQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAA 143
Query: 267 MTEMNGVYCSTRPMRI--GPATPRKTSGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSED 324
+ + NG R +R+ GP PR+ S P G A R V+VG L V
Sbjct: 144 VEQFNGYILDGRSLRVNSGPPPPREQSSQRAPRGEANR---------VYVGNLSWGVDNA 194
Query: 325 DLRQTFSQYGEISSVKIPVGKQC------GFVQFVQRKNAEDALQGLNGSTIGKQTVRLS 378
L FS GE+ K+ ++ GFV + + E+A+ L+G+ + + +R++
Sbjct: 195 ALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRVT 254
Query: 379 WGRN-PANKQ 387
+ P +Q
Sbjct: 255 VAESKPPRRQ 264
>Os09g0565200 Similar to Nucleic acid-binding protein precursor
Length = 322
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 88/180 (48%), Gaps = 8/180 (4%)
Query: 113 ENKTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKV 172
E ++VG+L Y +D L F G V +VI N++T +S G+GFV + AEK
Sbjct: 141 EEAKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKA 200
Query: 173 LEGFAGHIMPNTDQPFRINWASFSMGDR----RSDIASDHSIFVGDLASDVNDTTLLETF 228
+E F H + +N A+ G R I+VG+L V+D+ L++ F
Sbjct: 201 VEMF--HRYDVDGRLLTVNKAA-PRGARVERPPRQFGPSFRIYVGNLPWQVDDSRLVQLF 257
Query: 229 SKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPR 288
S+ + V A+VV D TGRS+G+GFV E A+ ++G R +R+ A R
Sbjct: 258 SE-HGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRALRVNVAEER 316
>Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 316
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 3/173 (1%)
Query: 117 IWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGF 176
++ G+L Y D L ++V+ ++ TG+S G+ FV + E+V++
Sbjct: 147 LYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKNL 206
Query: 177 AGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETFSKRYSSVK 236
G + + + R+N+A ++H +FVG+L+ V L E F K +V
Sbjct: 207 DGSLY--SGRTMRVNFADKPKPKLPLYPETEHKLFVGNLSWTVTSEMLTEMFQK-CGNVV 263
Query: 237 GAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRK 289
GA+V+ D TGRS+GYGFV + E A++ +NG R +R+ A +K
Sbjct: 264 GARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTELEGREIRVNLALGKK 316
>Os08g0567200 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 235
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 207 DHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHA 266
D+ +F GDL ++VND L + FS R+ S A+VV D TG++KGYGFV F + + A
Sbjct: 126 DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGA 184
Query: 267 MTEMNGVYCSTRPMRI 282
+ EMNG Y RP+++
Sbjct: 185 IKEMNGKYVGNRPIKL 200
>Os07g0158300 Similar to RNA binding protein
Length = 364
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 19/197 (9%)
Query: 110 GQEENKTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAA 169
GQE + ++VG+L Y M + F G V +++I +K T +S G+ FV + A
Sbjct: 130 GQEPGR-LFVGNLPYTMTSGEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTMATAEEA 188
Query: 170 EKVLEGFAGHIMPNTDQPFRINWASFSMG-------------DRRSDIASDHSIFVGDLA 216
++ F G ++ + R+N+ G +RR D I+ G+L
Sbjct: 189 ATAIQMFNGALL--GGRTARVNYPEVPRGGERAVGSAAATRENRRDD--GTFKIYAGNLG 244
Query: 217 SDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCS 276
V L F + + A+V+ + ++GRS+G+GFV F + A+ ++GV
Sbjct: 245 WGVRADALRAAFEGQ-PGLLDARVIFERDSGRSRGFGFVSFRTAEDAQAALEALDGVELE 303
Query: 277 TRPMRIGPATPRKTSGT 293
RP+R+ A T+G+
Sbjct: 304 GRPLRLSMAEQNPTAGS 320
>Os02g0622500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 137
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 198 GDRRSDIASDHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRF 257
D+ S D +F GDL ++VND L + FSK Y S A+V+ D TG+++GY FV F
Sbjct: 19 SDKFSPSTDDFRLFCGDLGNEVNDDVLTKAFSK-YPSFNMARVIRDKWTGKTRGYAFVSF 77
Query: 258 GDDNEKTHAMTEMNGVYCSTRPMRIGPAT 286
+ ++ A+ EMNG Y RP+++ +T
Sbjct: 78 ANASDLAAALKEMNGKYVGNRPIKLRKST 106
>Os04g0611500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 536
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 16/203 (7%)
Query: 203 DIASDHSIFVGDLASDVNDTTLLETFSKRYSS--VKGAKVVIDANTGR--SKGYGFVRFG 258
D S+FV +L +D +L + FS + S +K A V G+ S G+GFV F
Sbjct: 309 DRVESRSVFVKNLNFKTSDESLKQHFSTKLKSGSLKSATVKKHIKNGKNVSMGFGFVEFD 368
Query: 259 DDNEKTHAMTEMNGVYCSTRPMRIGPATPRKTSGTSGPTGSAARSDGDLTNTTVFVGGLD 318
T ++ G + + RK G +++ D ++T + V +
Sbjct: 369 SVETATSVCKDLQGTVLDGHALILQLCHGRKD-------GQTKKNEKDKSSTKLLVRNVA 421
Query: 319 PNVSEDDLRQTFSQYGEISSVKIPVG----KQCGFVQFVQRKNAEDALQGLNGSTI-GKQ 373
+E DLRQ FS +G+I S+++P+ + FV+FV ++ A++ALQ L + + G+
Sbjct: 422 FEATEKDLRQLFSPFGQIKSLRLPMKFGSHRGFAFVEFVTKQEAQNALQALASTHLYGRH 481
Query: 374 TVRLSWGRNPANKQLRSDNGSQW 396
V ++LR+ +Q+
Sbjct: 482 LVIERAKEGETLEELRARTAAQF 504
>Os07g0584500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 472
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 26/206 (12%)
Query: 111 QEENKTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAE 170
+ ++ ++VG + + DE+ L F GEV ++R++ TG++ G+GFV F AE
Sbjct: 2 EADSGKLFVGGISWETDEDRLREYFSRFGEVTEAVIMRDRNTGRARGFGFVVFTDAGVAE 61
Query: 171 KV------LEGF---AGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVND 221
+V ++G A +P DQ S+G IFVG LAS+V +
Sbjct: 62 RVTMDKHMIDGRMVEAKKAVPRDDQSITSKNNGSSIGS--PGPGRTRKIFVGGLASNVTE 119
Query: 222 TTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAM----TEMNGVYCST 277
F +++ + V+ D NT R +G+GF+ + ++ A+ E+NG
Sbjct: 120 VEFRRYF-EQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHKNFHELNG----- 173
Query: 278 RPMRIGPATPRKTSGTSGPTGSAARS 303
+ + + A P++ S G AARS
Sbjct: 174 KMVEVKRAVPKEQS-----PGPAARS 194
>Os10g0151800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 472
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/279 (20%), Positives = 124/279 (44%), Gaps = 28/279 (10%)
Query: 117 IWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGF 176
+++G L E+ LH GE+ ++++++K+T +++G+ FV F A++ +E
Sbjct: 111 VFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKGFAFVTFTGKDGAQRAIEDL 170
Query: 177 AGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETFSKRYSSVK 236
H + + R + + + H +FVG++ +++ L + V
Sbjct: 171 --HDKEHKGRTLRCSLSQ-----------AKHRLFVGNVPKGLSEDELRNIIQGKGPGVV 217
Query: 237 GAKVVIDA-NTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRKTSGTSG 295
++ D + R++G+ FV + HA + S ++ + + T +
Sbjct: 218 NIEMFKDLHDPSRNRGFLFVEY-----YNHACADYAKQKLSAPNFKVDGS--QLTVSWAE 270
Query: 296 PTGSAARSDGDLTN--TTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIPVGK-----QCG 348
P GS++ T++V L N S++ +++ F +GE++ V +P K G
Sbjct: 271 PKGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRDFG 330
Query: 349 FVQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQ 387
FV F +R +A A++G I Q + +S + +K+
Sbjct: 331 FVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLGDKK 369
>Os11g0637700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 467
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 210 IFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTE 269
+F+G ++ D N+ L E F K Y V A ++ D TGR++G+GF+ F D + E
Sbjct: 8 LFIGGISWDTNEDRLREYFDK-YGEVVEAVIMRDRATGRARGFGFIVFADPAVAERVIME 66
Query: 270 MNGVYCSTRPMRIGPATPRKTS-GTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQ 328
+ R + A PR S GSA S G +FVGGL V+E D R+
Sbjct: 67 KH--MIDGRMVEAKKAVPRDDQHALSKSGGSAHGSPGPSRTKKIFVGGLASTVTEADFRK 124
Query: 329 TFSQYGEISSVKI 341
F Q+G I+ V +
Sbjct: 125 YFEQFGTITDVVV 137
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,793,452
Number of extensions: 493153
Number of successful extensions: 2055
Number of sequences better than 1.0e-10: 33
Number of HSP's gapped: 1962
Number of HSP's successfully gapped: 44
Length of query: 441
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 337
Effective length of database: 11,605,545
Effective search space: 3911068665
Effective search space used: 3911068665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)