BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0346500 Os09g0346500|AK060851
(265 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0346500 Similar to Chlorophyll a-b binding protein, ch... 501 e-142
Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast... 468 e-132
Os01g0720500 Similar to Type I chlorophyll a/b-binding prot... 463 e-131
Os03g0592500 Similar to Photosystem II type II chlorophyll ... 400 e-112
AK058312 347 4e-96
Os07g0562700 Similar to Type III chlorophyll a/b-binding pr... 337 4e-93
Os09g0296800 Chlorophyll A-B binding protein family protein 200 1e-51
Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment) 199 2e-51
Os06g0320500 Similar to Light-harvesting complex I (Fragment) 137 6e-33
AK060800 137 6e-33
Os07g0577600 Similar to Type II chlorophyll a/b binding pro... 129 2e-30
Os02g0764500 Similar to Lhca5 protein 125 3e-29
Os09g0439500 Similar to Type II chlorophyll a/b binding pro... 120 1e-27
Os07g0558400 Similar to Chlorophyll a/b-binding protein CP2... 111 6e-25
Os08g0435900 Similar to LHC I type IV chlorophyll binding p... 107 9e-24
Os02g0197600 Similar to PSI type III chlorophyll a/b-bindin... 86 2e-17
Os04g0457000 Similar to Chlorophyll a/b-binding protein CP2... 79 2e-15
D85512 79 4e-15
>Os09g0346500 Similar to Chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP)
Length = 265
Score = 501 bits (1291), Expect = e-142, Method: Compositional matrix adjust.
Identities = 250/265 (94%), Positives = 250/265 (94%)
Query: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRXXXXXXXXXXXXXXXWYGADRVLYLGP 60
MAAATMALSSPVMARAAPSTSSALFGEARITMR WYGADRVLYLGP
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGP 60
Query: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 120
LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR
Sbjct: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 120
Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 180
NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 180
Query: 181 LGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
LGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 241 NLADHLADPVNNNAWAYATNFVPGK 265
NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265
>Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast precursor (LHCII
type I CAB-2) (LHCP)
Length = 261
Score = 468 bits (1205), Expect = e-132, Method: Compositional matrix adjust.
Identities = 237/265 (89%), Positives = 242/265 (91%), Gaps = 4/265 (1%)
Query: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRXXXXXXXXXXXXXXXWYGADRVLYLGP 60
MAAATMALSSP +A A ++ +FGE RITMR WYGADRVLYLGP
Sbjct: 1 MAAATMALSSPALAGKA---AAKVFGEGRITMRKSAAKPKPAASGSP-WYGADRVLYLGP 56
Query: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 120
LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR
Sbjct: 57 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 116
Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 180
NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP
Sbjct: 117 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 176
Query: 181 LGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
LGEVVDPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 177 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 236
Query: 241 NLADHLADPVNNNAWAYATNFVPGK 265
NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 237 NLADHLADPVNNNAWAYATNFVPGK 261
>Os01g0720500 Similar to Type I chlorophyll a/b-binding protein b (Fragment)
Length = 265
Score = 463 bits (1192), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/265 (86%), Positives = 236/265 (89%)
Query: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRXXXXXXXXXXXXXXXWYGADRVLYLGP 60
MAA+TMALSSP ++ +FGE R+TMR WYGADRVLYLGP
Sbjct: 1 MAASTMALSSPAALAGKAVANAKVFGEGRVTMRKSAAKPKPAAASGSPWYGADRVLYLGP 60
Query: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 120
LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLAR
Sbjct: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 180
NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIW QVVLMGAVEGYR+AGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVAGGP 180
Query: 181 LGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
LGEVVDPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 241 NLADHLADPVNNNAWAYATNFVPGK 265
NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265
>Os03g0592500 Similar to Photosystem II type II chlorophyll a/b binding protein
(Fragment)
Length = 263
Score = 400 bits (1029), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/237 (81%), Positives = 209/237 (88%), Gaps = 5/237 (2%)
Query: 29 RITMRXXXXXXXXXXXXXXXWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADP 88
RITMR WYG DR YLGP S + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 32 RITMRRTVKSAPQSI-----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 86
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGN 148
ETFA+NRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGN
Sbjct: 87 ETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 146
Query: 149 PSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAE 208
P+L+HAQSILAIWAVQVVLMG VEGYR+ GGPLGE +D +YPGGAFDPLGLADDP+ FAE
Sbjct: 147 PNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAE 206
Query: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263
>AK058312
Length = 266
Score = 347 bits (891), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 190/279 (68%), Positives = 205/279 (73%), Gaps = 27/279 (9%)
Query: 1 MAAATMALSSPVMA-----------RAAPSTSSALFGEARITMRXXXXXXXXXXXXXXXW 49
MA+ MA +S V+A AP A RITM W
Sbjct: 1 MASTIMAPTSRVLAAKTPFLGHPRPSNAPVRDIAAAATGRITM------------SKELW 48
Query: 50 YGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 109
YG DRV YLGP S + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGA
Sbjct: 49 YGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGA 108
Query: 110 LGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLM 168
LGC+ PE+L + V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+ QVVLM
Sbjct: 109 LGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLM 168
Query: 169 GAVEGYRIAGGP-LGEVVDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226
G VEGYRI G P +G+ D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFG
Sbjct: 169 GLVEGYRINGLPGVGDGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 227
Query: 227 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
FFVQAIVTGKGPLENL DHLADPVNNNAWAYATNFVPGK
Sbjct: 228 FFVQAIVTGKGPLENLLDHLADPVNNNAWAYATNFVPGK 266
>Os07g0562700 Similar to Type III chlorophyll a/b-binding protein (Fragment)
Length = 266
Score = 337 bits (865), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 185/278 (66%), Positives = 200/278 (71%), Gaps = 27/278 (9%)
Query: 1 MAAATMALSSPVMA-----------RAAPSTSSALFGEARITMRXXXXXXXXXXXXXXXW 49
MA+ MA +S V+A AP A RITM W
Sbjct: 1 MASTIMAPTSRVLAAKTPFLGHPRPSNAPVRDIAAAATGRITM------------SKELW 48
Query: 50 YGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 109
YG DRV YLGP S + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGA
Sbjct: 49 YGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGA 108
Query: 110 LGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLM 168
LGC+ PE+L + V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+ QVVLM
Sbjct: 109 LGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLM 168
Query: 169 GAVEGYRIAGGP-LGEVVDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226
G VEGYRI G P +G+ D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFG
Sbjct: 169 GLVEGYRINGLPGVGDGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 227
Query: 227 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 264
FFVQAIVTGKGPLENL DHLADPV NNAW YAT F PG
Sbjct: 228 FFVQAIVTGKGPLENLLDHLADPVANNAWVYATKFTPG 265
>Os09g0296800 Chlorophyll A-B binding protein family protein
Length = 321
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 139/215 (64%), Gaps = 10/215 (4%)
Query: 49 WYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 108
WYG +R +LGP+ E P++LTGE+PGDYG+D AGL DP FA E++H RWAML
Sbjct: 101 WYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLA 160
Query: 109 ALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAVQV 165
ALG V PELL GV F E VW+K G LDYLG P A Q ++ I Q
Sbjct: 161 ALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQA 220
Query: 166 VLMGAVEGYRIAG----GPLGEVV--DPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGR 218
+LM E R G PLG + D YPGGA FDPLGL+ DP AF +LKVKEIKNGR
Sbjct: 221 LLMVGPEYARYCGIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGR 280
Query: 219 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
LAM + GF++QA VTGKGP++NL +HL+DP++NN
Sbjct: 281 LAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNN 315
>Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment)
Length = 283
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/209 (54%), Positives = 140/209 (66%), Gaps = 9/209 (4%)
Query: 49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYG DR ++L G L E P YL GE PGDYG+D GLS PE F+K + E+IH+RWA
Sbjct: 65 WYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWA 124
Query: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQ 164
MLGA G + PE + G G EAVWFK G+ + L+Y GN I+ ++ A +
Sbjct: 125 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LIVAVAAE 181
Query: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
VVL+G E YRI G ++ D L+PGG FDPLGLA DP+ A LKVKEIKNGRLAMFSM
Sbjct: 182 VVLVGGAEYYRIINGL--DLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSM 239
Query: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
GFF+QA VTG+GP+ENL+ HL+DP NN
Sbjct: 240 LGFFIQAYVTGEGPVENLSKHLSDPFGNN 268
>Os06g0320500 Similar to Light-harvesting complex I (Fragment)
Length = 241
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 110/199 (55%), Gaps = 21/199 (10%)
Query: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
+ G+P P++L G PGD+G+D GL+ PE F + +E EV H RWAML G + PE L
Sbjct: 46 MPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEAL- 104
Query: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 178
G W +A GG YLGNP + ++ I ++ V + E R
Sbjct: 105 ------GLGNWVQAQEWAAEPGGQATYLGNP--VPWGTLPTILVIEFVAIAFAEHQRTME 156
Query: 179 GPLGEVVDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 234
DP YPGGAFDPLG + DP F E K+KEIKNGRLAM + GF V Q+
Sbjct: 157 K------DPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 210
Query: 235 GKGPLENLADHLADPVNNN 253
G GPLENLA HL+DP +NN
Sbjct: 211 GTGPLENLASHLSDPWHNN 229
>AK060800
Length = 241
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 110/199 (55%), Gaps = 21/199 (10%)
Query: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
+ G+P P++L G PGD+G+D GL+ PE F + +E EV H RWAML G + PE L
Sbjct: 46 MPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEAL- 104
Query: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 178
G W +A GG YLGNP + ++ I ++ V + E R
Sbjct: 105 ------GLGNWVQAQEWAAEPGGQATYLGNP--VPWGTLPTILVIEFVAIAFAEHQRTME 156
Query: 179 GPLGEVVDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 234
DP YPGGAFDPLG + DP F E K+KEIKNGRLAM + GF V Q+
Sbjct: 157 K------DPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 210
Query: 235 GKGPLENLADHLADPVNNN 253
G GPLENLA HL+DP +NN
Sbjct: 211 GTGPLENLASHLSDPWHNN 229
>Os07g0577600 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 263
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 107/201 (53%), Gaps = 32/201 (15%)
Query: 65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 124
PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + G+
Sbjct: 67 PPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI- 125
Query: 125 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--GPLG 182
W+ AG Q Y + + ++ ++++L+G EG R A P
Sbjct: 126 LNTPSWYTAGEQ-------QYFTDTT--------TLFIIELILIGWAEGRRWADIIKPGC 170
Query: 183 EVVDPL------------YPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFF 228
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G +
Sbjct: 171 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAW 230
Query: 229 VQAIVTGKGPLENLADHLADP 249
QA TG GP++NL HLADP
Sbjct: 231 FQAEYTGTGPIDNLFAHLADP 251
>Os02g0764500 Similar to Lhca5 protein
Length = 261
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 110/207 (53%), Gaps = 32/207 (15%)
Query: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 123
+PP +L G PGD+G+D GL +P + E++H R+AM G G + +L+ +G+
Sbjct: 62 DPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGI 121
Query: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYR----IAGG 179
VWF+AG+ F D+ + A++ VQ++LMG E R I G
Sbjct: 122 N-NLPVWFEAGATKF-----DF---------ANTTALFFVQLLLMGFAETKRYMDFINPG 166
Query: 180 PLGEV------------VDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226
E P YPGG F+PLGLA D E E K+KEIKNGRLAM +M G
Sbjct: 167 SQAEEGTFLGIEAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLG 226
Query: 227 FFVQAIVTGKGPLENLADHLADPVNNN 253
F VQA VT GP++NL HL+DP N N
Sbjct: 227 FIVQASVTHVGPIDNLLTHLSDPFNKN 253
>Os09g0439500 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 264
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 114/226 (50%), Gaps = 34/226 (15%)
Query: 51 GADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 110
G DR L+ PP +L G PGD+G+D GL +DPE + E++HSRWAML
Sbjct: 56 GPDRPLWFP--GSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVA 113
Query: 111 GCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGA 170
G + PE+L + G + W AG++ DY +P ++ Q+ LMG
Sbjct: 114 GILVPEVLEKWGF-MEDYSWIDAGAR-------DYFADP--------WTLFVSQMALMGW 157
Query: 171 VEGYRIAG--GPLGEVVDPL------------YPGGAFDPLGL--ADDPEAFAELKVKEI 214
EG R A P V+P YPGG + G PE L+ KEI
Sbjct: 158 AEGRRWADYLNPGCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEI 217
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATN 260
KNGRLAM + GF+ QA+ TG+GP++NL HLADP + N ++ T+
Sbjct: 218 KNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTS 263
>Os07g0558400 Similar to Chlorophyll a/b-binding protein CP29 precursor
Length = 290
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 109/235 (46%), Gaps = 64/235 (27%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN-------------------- 94
P YL G GDYG+D GL E AKN
Sbjct: 64 PDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGEIIGTRFETGEVKSTPF 123
Query: 95 ------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG 142
RE E+IH RWAML LG + E L GV W AG +G
Sbjct: 124 QPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV-----TWQDAGKVELVDGS 176
Query: 143 LDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGA-FDPLG 198
YLG P ++ IW ++V+++G +E R A +DP LYPGG+ FDPLG
Sbjct: 177 -SYLGQPLPFSISTL--IW-IEVLVIGYIEFQRNAE------LDPEKRLYPGGSYFDPLG 226
Query: 199 LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
LA DPE L++ EIK+ RLAM + GF VQA TGKGPL N A HL+DP++
Sbjct: 227 LASDPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTT 281
>Os08g0435900 Similar to LHC I type IV chlorophyll binding protein (Fragment)
Length = 244
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 96/202 (47%), Gaps = 34/202 (16%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+L + G+
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGL-I 114
Query: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--GPLGE 183
W+ AG Y + S ++ ++ +L VE R P
Sbjct: 115 DAPQWYDAGKAT-------YFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGCV 159
Query: 184 VVDPL------------YPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 231
DP+ YPG F+PL E E K KE+ NGRLAM + GF VQ
Sbjct: 160 NQDPIFKSYSLPPHECGYPGSVFNPLNF----EPTLEAKEKELANGRLAMLAFLGFLVQH 215
Query: 232 IVTGKGPLENLADHLADPVNNN 253
VT KGP +NL HL+DP +N
Sbjct: 216 NVTQKGPFDNLLQHLSDPWHNT 237
>Os02g0197600 Similar to PSI type III chlorophyll a/b-binding protein
Length = 180
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 186 DPLYPGGA-FDPLGLADDPEA-FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
+P YPGG F+PLG EA ELK+KEIKNGRLAM + GF VQA+ TG GP++NL
Sbjct: 103 EPAYPGGPLFNPLGFGTKSEAEMKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLL 162
Query: 244 DHLADPVNNN 253
DHLADPV+NN
Sbjct: 163 DHLADPVHNN 172
>Os04g0457000 Similar to Chlorophyll a/b-binding protein CP24, photosystem II
(Fragment)
Length = 252
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 91/207 (43%), Gaps = 50/207 (24%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
P +L G PGD+G+D GL DP RE E+IH RWAM LG + A +GV
Sbjct: 64 PPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ--AWSGVP- 120
Query: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--GPLGE 183
WF+AG+Q P I S ++ Q++LMG VE R P +
Sbjct: 121 ----WFEAGAQ------------PEAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQ 164
Query: 184 VV------------------DPLYPGGA-FDPLGLAD---------DPEAFAELKVKEIK 215
V + YPGG FDPLGL D + LK+ EIK
Sbjct: 165 AVEWATPWSRTAENFSNATGEQGYPGGKFFDPLGLGGETRDGVYIPDTDKLDRLKLAEIK 224
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
+ RLAM +M F+ +A GK PL L
Sbjct: 225 HARLAMLAMLIFYFEA-GQGKTPLGAL 250
>D85512
Length = 124
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 41/47 (87%)
Query: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
A LK+KEIKNGRLAMFSM GFF+QA VTG+GP+ENL+ HL+DP NN
Sbjct: 63 ALLKLKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNN 109
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.138 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,489,521
Number of extensions: 399290
Number of successful extensions: 995
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 946
Number of HSP's successfully gapped: 18
Length of query: 265
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 166
Effective length of database: 11,866,615
Effective search space: 1969858090
Effective search space used: 1969858090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)