Os02g0764500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lhca5 protein.
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Os02g0764500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Lhca5 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.82 | 0.425 | 12.5 | -2.51 | 1.54 | -0.981 | 1.72 | -0.218 | -1.14 | 7.05 | 70.28 | 1096 | -- | -- |
| 81.89 | 0.421 | 12.5 | -2.53 | 1.54 | -0.981 | 1.68 | -- | -1.15 | 7.04 | 70.09 | 1093 | -- | -- |
| 89.2 | 0.44 | 12.5 | -2.52 | 1.53 | -0.95 | -- | 0.207 | -1.15 | 6.96 | 70 | 1105 | -- | -- |
| 88.46 | 0.438 | 12.5 | -2.5 | 1.46 | -0.911 | -- | -- | -1.14 | 6.34 | 68.07 | 1438 | -- | -- |
| 194.54 | 0.65 | 12.5 | -2.41 | -- | -1.16 | -- | -0.274 | -1.12 | -- | 70.63 | 1336 | -- | -- |
| 96.14 | 0.46 | 12.5 | -2.53 | 1.47 | -- | 1.56 | -- | -1.04 | 6.42 | -- | -- | -- | -- |
| 102.09 | 0.473 | 12.5 | -2.51 | 1.48 | -- | -- | -- | -1.05 | 6.33 | -- | -- | -- | -- |
| 194.3 | 0.649 | 12.6 | -2.47 | -- | -1.13 | -- | -- | -1.14 | -- | 68.93 | 1335 | -- | -- |
| 165.76 | 0.6 | 12.5 | -- | 1.45 | -2.85 | -- | -- | -1 | 6.45 | 30 | 47520 | -- | -- |
| 215.35 | 0.686 | 12.5 | -2.47 | -- | -- | -- | -- | -1.01 | -- | -- | -- | -- | -- |
| 268.66 | 0.767 | 12.4 | -- | 1.44 | -- | -- | -- | -0.767 | 6.43 | -- | -- | -- | -- |
| 274.34 | 0.771 | 12.5 | -- | -- | -2.84 | -- | -- | -0.976 | -- | 30.78 | 47520 | -- | -- |
| 376.91 | 0.906 | 12.5 | -- | -- | -- | -- | -- | -0.74 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.72 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 5 | 79.47 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 5 |
| 14 | 79.77 | humidity | 90 | 720 | > th | dose dependent | rect. | 8 | 18 |
| 22 | 80.17 | humidity | 90 | 720 | > th | dose dependent | rect. | 14 | 12 |
| 43 | 80.77 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 11 | 21 |
| 51 | 81.06 | wind | 1 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 52 | 81.08 | humidity | 90 | 720 | > th | dose dependent | sin | 17 | NA |
| 53 | 81.10 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 3 |
| 54 | 81.12 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 55 | 81.16 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 58 | 81.22 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 82 | 81.56 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 8 |
| 84 | 81.59 | wind | 1 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 90 | 81.70 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 102 | 81.83 | humidity | 90 | 720 | > th | dose independent | rect. | 9 | 17 |
| 104 | 81.86 | humidity | 90 | 720 | < th | dose independent | rect. | 21 | 4 |
| 109 | 81.90 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 116 | 81.93 | humidity | 90 | 720 | > th | dose independent | rect. | 13 | 13 |
| 117 | 81.93 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 21 |
| 126 | 81.98 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 18 |
| 128 | 81.98 | humidity | 70 | 1440 | > th | dose dependent | rect. | 20 | 21 |
| 134 | 82.00 | humidity | 70 | 1440 | > th | dose dependent | rect. | 22 | 19 |
| 164 | 82.09 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 185 | 82.16 | humidity | 90 | 720 | > th | dose independent | sin | 15 | NA |
| 186 | 82.16 | humidity | 90 | 720 | > th | dose independent | rect. | 5 | 20 |
| 187 | 82.16 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 204 | 82.25 | humidity | 80 | 1440 | > th | dose independent | sin | 23 | NA |
| 222 | 82.29 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 11 | 13 |
| 245 | 82.36 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 9 | 15 |
| 258 | 82.40 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 11 | 15 |
| 259 | 82.40 | temperature | 25 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 292 | 82.51 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 12 | 20 |
| 297 | 82.53 | temperature | 30 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 301 | 82.54 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 305 | 82.55 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 310 | 82.56 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 327 | 82.59 | humidity | 80 | 1440 | < th | dose independent | sin | 23 | NA |
| 359 | 82.64 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 18 |
| 364 | 82.64 | humidity | 70 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 365 | 82.65 | humidity | 70 | 1440 | > th | dose dependent | no | NA | NA |
| 369 | 82.65 | humidity | 70 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 384 | 82.68 | humidity | 80 | 14400 | < th | dose dependent | rect. | 19 | 2 |
| 426 | 82.74 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 455 | 82.80 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 14 | 18 |
| 463 | 82.81 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 5 | 19 |
| 468 | 82.82 | atmosphere | 1000 | 720 | > th | dose independent | sin | 18 | NA |
| 480 | 82.83 | humidity | 70 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 501 | 82.87 | temperature | 30 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 558 | 82.92 | humidity | 90 | 720 | < th | dose independent | rect. | 17 | 8 |
| 615 | 82.97 | radiation | 20 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 631 | 83.00 | humidity | 80 | 14400 | > th | dose independent | rect. | 13 | 13 |
| 634 | 83.01 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 656 | 83.04 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 690 | 83.06 | temperature | 30 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 703 | 83.08 | humidity | 90 | 720 | < th | dose independent | rect. | 8 | 17 |
| 715 | 83.10 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 737 | 83.12 | humidity | 70 | 1440 | > th | dose dependent | sin | 21 | NA |
| 752 | 83.13 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 5 |
| 832 | 83.18 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 904 | 83.26 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 14 | 8 |
| 955 | 83.32 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 978 | 83.34 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 9 | 17 |
| 993 | 83.35 | temperature | 30 | 14400 | > th | dose dependent | sin | 8 | NA |