BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0764500 Os02g0764500|AK066291
(261 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0764500 Similar to Lhca5 protein 490 e-139
Os07g0577600 Similar to Type II chlorophyll a/b binding pro... 180 1e-45
Os08g0435900 Similar to LHC I type IV chlorophyll binding p... 171 4e-43
Os09g0439500 Similar to Type II chlorophyll a/b binding pro... 148 3e-36
Os09g0296800 Chlorophyll A-B binding protein family protein 126 1e-29
Os04g0457000 Similar to Chlorophyll a/b-binding protein CP2... 126 1e-29
Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment) 120 1e-27
Os06g0320500 Similar to Light-harvesting complex I (Fragment) 112 3e-25
AK060800 112 3e-25
Os02g0197600 Similar to PSI type III chlorophyll a/b-bindin... 112 3e-25
Os01g0720500 Similar to Type I chlorophyll a/b-binding prot... 110 8e-25
Os09g0346500 Similar to Chlorophyll a-b binding protein, ch... 109 2e-24
Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast... 108 3e-24
Os03g0592500 Similar to Photosystem II type II chlorophyll ... 108 4e-24
AK058312 108 4e-24
Os07g0562700 Similar to Type III chlorophyll a/b-binding pr... 105 2e-23
Os07g0558400 Similar to Chlorophyll a/b-binding protein CP2... 100 2e-21
D85512 71 7e-13
>Os02g0764500 Similar to Lhca5 protein
Length = 261
Score = 490 bits (1262), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/261 (93%), Positives = 244/261 (93%)
Query: 1 MASLGANSHGRVLHTCTLSPKPVTALSRSMAAIPGHHVFQSPRARIAVRASTERATWXXX 60
MASLGANSHGRVLHTCTLSPKPVTALSRSMAAIPGHHVFQSPRARIAVRASTERATW
Sbjct: 1 MASLGANSHGRVLHTCTLSPKPVTALSRSMAAIPGHHVFQSPRARIAVRASTERATWLPG 60
Query: 61 XXXXXXXXXXXXXXFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSG 120
FGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSG
Sbjct: 61 LDPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSG 120
Query: 121 INNLPVWFEAGATKFDFANTTALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLGIEAA 180
INNLPVWFEAGATKFDFANTTALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLGIEAA
Sbjct: 121 INNLPVWFEAGATKFDFANTTALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLGIEAA 180
Query: 181 LAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVGPID 240
LAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVGPID
Sbjct: 181 LAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVGPID 240
Query: 241 NLLTHLSDPFNKNIIHTLSSS 261
NLLTHLSDPFNKNIIHTLSSS
Sbjct: 241 NLLTHLSDPFNKNIIHTLSSS 261
>Os07g0577600 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 263
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 127/222 (57%), Gaps = 5/222 (2%)
Query: 40 QSPRARIAVRAST-ERATWXXXXXXXXXXXXXXXXXFGFDPLGLGEEPANLKWYVQAELV 98
S RA AVRA+ +R W FGFDPLGLG +P +L+W VQAELV
Sbjct: 43 SSARASFAVRAAAPDRPIWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELV 102
Query: 99 HCRFAMAGVAGILATDLIRVSGINNLPVWFEAGATKFDFANTTALFFVQLLLMGFAETKR 158
HCR+AM G AGI + + GI N P W+ AG ++ F +TT LF ++L+L+G+AE +R
Sbjct: 103 HCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQQY-FTDTTTLFIIELILIGWAEGRR 161
Query: 159 YMDFINPGSQAEEGTFLGIEAALAGSQPGYPGGPLFNPLGLAK-DIENADEAKLKEIKNG 217
+ D I PG + F L G+ GYPGG F+PLG E E + KEIKNG
Sbjct: 162 WADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNG 219
Query: 218 RLAMVAMLGFIVQASVTHVGPIDNLLTHLSDPFNKNIIHTLS 259
RLAM+A++G QA T GPIDNL HL+DP + I +
Sbjct: 220 RLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAFT 261
>Os08g0435900 Similar to LHC I type IV chlorophyll binding protein (Fragment)
Length = 244
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 142/245 (57%), Gaps = 17/245 (6%)
Query: 22 PVTALSRSMAAIPGHHVFQS-------PRARIAVRASTERATWXXXXXXXXXXXXXXXXX 74
PV AL RS A++ + QS P R VRA + W
Sbjct: 9 PVAAL-RSSASLKSTFLGQSSTRLARAPTTRRNVRAEA-KGEWLPGLPSPTYLNGSLPGD 66
Query: 75 FGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGINNLPVWFEAGATK 134
GFDPLGL E+P NL+W+VQAELV+ R+AM GVAG+L +++ G+ + P W++AG
Sbjct: 67 NGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWYDAGKAT 126
Query: 135 FDFANTTALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLGIEAALAGSQPGYPGGPLF 194
+ FA+++ LF ++ +L + E +R+ D NPG ++ F +L + GYPG +F
Sbjct: 127 Y-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSY--SLPPHECGYPGS-VF 182
Query: 195 NPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVGPIDNLLTHLSDPFNKNI 254
NPL + E EAK KE+ NGRLAM+A LGF+VQ +VT GP DNLL HLSDP++ I
Sbjct: 183 NPL----NFEPTLEAKEKELANGRLAMLAFLGFLVQHNVTQKGPFDNLLQHLSDPWHNTI 238
Query: 255 IHTLS 259
I TLS
Sbjct: 239 IQTLS 243
>Os09g0439500 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 264
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 110/187 (58%), Gaps = 4/187 (2%)
Query: 75 FGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGINNLPVWFEAGATK 134
FGFDPLGLG +P L+W+ QAEL+H R+AM VAGIL +++ G W +AGA
Sbjct: 80 FGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILVPEVLEKWGFMEDYSWIDAGARD 139
Query: 135 FDFANTTALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLGIEAALAGSQPGYPGGPLF 194
+ FA+ LF Q+ LMG+AE +R+ D++NPG A E + GYPGG F
Sbjct: 140 Y-FADPWTLFVSQMALMGWAEGRRWADYLNPGCVAVEPRLPNRRNPVPDV--GYPGGLWF 196
Query: 195 NPLGLAK-DIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVGPIDNLLTHLSDPFNKN 253
+ + E + KEIKNGRLAM+A +GF QA T GPIDNLL HL+DP + N
Sbjct: 197 DWGNWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCN 256
Query: 254 IIHTLSS 260
+ +S
Sbjct: 257 VFSAFTS 263
>Os09g0296800 Chlorophyll A-B binding protein family protein
Length = 321
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 109/207 (52%), Gaps = 38/207 (18%)
Query: 75 FGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGINNL--PVWFEAGA 132
+GFD GLG +P Y E++HCR+AM G++ +L+ + G+ + PVW++ G
Sbjct: 129 YGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGVVHFVEPVWWKVGY 188
Query: 133 TK-------------FDFANTTALFFV---QLLLMGFAETKRYMDFINPGSQAEEGTFLG 176
K F A + + Q LLM E RY G
Sbjct: 189 AKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLMVGPEYARYC---------------G 233
Query: 177 IEA--ALAGSQPG---YPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQA 231
IEA L PG YPGG LF+PLGL+KD ++ K+KEIKNGRLAMVA LGF +QA
Sbjct: 234 IEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQA 293
Query: 232 SVTHVGPIDNLLTHLSDPFNKNIIHTL 258
+VT GPI NL+ HLSDP + NI+ +
Sbjct: 294 AVTGKGPIQNLVEHLSDPLHNNILSSF 320
>Os04g0457000 Similar to Chlorophyll a/b-binding protein CP24, photosystem II
(Fragment)
Length = 252
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 99/172 (57%), Gaps = 21/172 (12%)
Query: 75 FGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGINNLPVWFEAGATK 134
FGFDPLGLG++PA LKWY +AEL+H R+AMA V GI SG+ WFEAGA
Sbjct: 75 FGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGVP----WFEAGAQP 128
Query: 135 FDFANTT--ALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLGIEAAL----AGSQPGY 188
A + +L QLLLMG+ E+KR++DF NP SQA E A A + GY
Sbjct: 129 EAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQAVEWATPWSRTAENFSNATGEQGY 188
Query: 189 PGGPLFNPLGLA---------KDIENADEAKLKEIKNGRLAMVAMLGFIVQA 231
PGG F+PLGL D + D KL EIK+ RLAM+AML F +A
Sbjct: 189 PGGKFFDPLGLGGETRDGVYIPDTDKLDRLKLAEIKHARLAMLAMLIFYFEA 240
>Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment)
Length = 283
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 107/200 (53%), Gaps = 32/200 (16%)
Query: 75 FGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGINNLP--VWFEAGA 132
+G+DP GL ++P + Y EL+H R+AM G AG + + G N P VWF+ GA
Sbjct: 96 YGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGA 155
Query: 133 TKFD------FANTTALFFVQLLLM-----GFAETKRYMDFINPGSQAEEGTFLGIEAAL 181
D F N+ + + + G AE R ++ ++ +E L
Sbjct: 156 LLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAEYYRIINGLD------------LEDKL 203
Query: 182 AGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVGPIDN 241
+PGGP F+PLGLA D + A K+KEIKNGRLAM +MLGF +QA VT GP++N
Sbjct: 204 ------HPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVEN 256
Query: 242 LLTHLSDPFNKNIIHTLSSS 261
L HLSDPF N++ +S +
Sbjct: 257 LSKHLSDPFGNNLLTVISGA 276
>Os06g0320500 Similar to Light-harvesting complex I (Fragment)
Length = 241
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 112/243 (46%), Gaps = 35/243 (14%)
Query: 27 SRSMAAIPGHHVFQSPRARIAVRAS-------TERATWXXXXXXXXXXXXXXXXXFGFDP 79
S S +P S R+R+ V A T A W FGFDP
Sbjct: 8 SCSAVGVPSLLAPSSNRSRLPVCAYATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDP 67
Query: 80 LGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGINNLPVWF-EAGATKFDFA 138
LGL P N + + ++E+ HCR+AM V G+L + + + W E G
Sbjct: 68 LGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPGGQATYLG 127
Query: 139 NTT------ALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLGIEAALAGSQPGYPGGP 192
N + ++ + + FAE +R M+ +P + YPGG
Sbjct: 128 NPVPWGTLPTILVIEFVAIAFAEHQRTME-KDPEKKK------------------YPGG- 167
Query: 193 LFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASV-THVGPIDNLLTHLSDPFN 251
F+PLG +KD +E KLKEIKNGRLAM+A +GF VQ S GP++NL +HLSDP++
Sbjct: 168 AFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWH 227
Query: 252 KNI 254
NI
Sbjct: 228 NNI 230
>AK060800
Length = 241
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 112/243 (46%), Gaps = 35/243 (14%)
Query: 27 SRSMAAIPGHHVFQSPRARIAVRAS-------TERATWXXXXXXXXXXXXXXXXXFGFDP 79
S S +P S R+R+ V A T A W FGFDP
Sbjct: 8 SCSAVGVPSLLAPSSNRSRLPVCAYATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDP 67
Query: 80 LGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGINNLPVWF-EAGATKFDFA 138
LGL P N + + ++E+ HCR+AM V G+L + + + W E G
Sbjct: 68 LGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPGGQATYLG 127
Query: 139 NTT------ALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLGIEAALAGSQPGYPGGP 192
N + ++ + + FAE +R M+ +P + YPGG
Sbjct: 128 NPVPWGTLPTILVIEFVAIAFAEHQRTME-KDPEKKK------------------YPGG- 167
Query: 193 LFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASV-THVGPIDNLLTHLSDPFN 251
F+PLG +KD +E KLKEIKNGRLAM+A +GF VQ S GP++NL +HLSDP++
Sbjct: 168 AFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWH 227
Query: 252 KNI 254
NI
Sbjct: 228 NNI 230
>Os02g0197600 Similar to PSI type III chlorophyll a/b-binding protein
Length = 180
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 72/104 (69%), Gaps = 3/104 (2%)
Query: 158 RYMDFINPGSQAEEGTFLGIEAALAGS-QPGYPGGPLFNPLGLAKDIE-NADEAKLKEIK 215
R+ D+ PGS ++ FLG+E LAGS +P YPGGPLFNPLG E E KLKEIK
Sbjct: 76 RFQDWYTPGSMGKQ-YFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEAEMKELKLKEIK 134
Query: 216 NGRLAMVAMLGFIVQASVTHVGPIDNLLTHLSDPFNKNIIHTLS 259
NGRLAM+A LGF VQA T VGP+ NLL HL+DP + NI+ +L
Sbjct: 135 NGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSLK 178
>Os01g0720500 Similar to Type I chlorophyll a/b-binding protein b (Fragment)
Length = 265
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 101/194 (52%), Gaps = 32/194 (16%)
Query: 75 FGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGIN-NLPVWFEAGAT 133
+G+D GL +P + E++HCR+AM G G + +L+ +G+ VWF+AG+
Sbjct: 77 YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQ 136
Query: 134 KF-----DF---------ANTTALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLGIEA 179
F D+ + A++ Q++LMG E R + G E
Sbjct: 137 IFSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYR----VAGGPLGEV-------- 184
Query: 180 ALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVGPI 239
P YPGG F+PLGLA D E E K+KEIKNGRLAM +M GF VQA VT GP+
Sbjct: 185 ----VDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 240 DNLLTHLSDPFNKN 253
+NL HL+DP N N
Sbjct: 240 ENLADHLADPVNNN 253
>Os09g0346500 Similar to Chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP)
Length = 265
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 101/194 (52%), Gaps = 32/194 (16%)
Query: 75 FGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGIN-NLPVWFEAGAT 133
+G+D GL +P + E++H R+AM G G + +L+ +G+ VWF+AG+
Sbjct: 77 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQ 136
Query: 134 KF-----DF---------ANTTALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLGIEA 179
F D+ + A++ VQ++LMG E R I G E
Sbjct: 137 IFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYR----IAGGPLGEV-------- 184
Query: 180 ALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVGPI 239
P YPGG F+PLGLA D E E K+KEIKNGRLAM +M GF VQA VT GP+
Sbjct: 185 ----VDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 240 DNLLTHLSDPFNKN 253
+NL HL+DP N N
Sbjct: 240 ENLADHLADPVNNN 253
>Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast precursor (LHCII
type I CAB-2) (LHCP)
Length = 261
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 101/194 (52%), Gaps = 32/194 (16%)
Query: 75 FGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGIN-NLPVWFEAGAT 133
+G+D GL +P + E++H R+AM G G + +L+ +G+ VWF+AG+
Sbjct: 73 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQ 132
Query: 134 KF-----DF---------ANTTALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLGIEA 179
F D+ + A++ VQ++LMG E R I G E
Sbjct: 133 IFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYR----IAGGPLGEV-------- 180
Query: 180 ALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVGPI 239
P YPGG F+PLGLA D E E K+KEIKNGRLAM +M GF VQA VT GP+
Sbjct: 181 ----VDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 235
Query: 240 DNLLTHLSDPFNKN 253
+NL HL+DP N N
Sbjct: 236 ENLADHLADPVNNN 249
>Os03g0592500 Similar to Photosystem II type II chlorophyll a/b binding protein
(Fragment)
Length = 263
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 101/194 (52%), Gaps = 32/194 (16%)
Query: 75 FGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGIN-NLPVWFEAGAT 133
+G+D GL +P + E++H R+AM G G + +++ +G+ VWF+AGA
Sbjct: 75 YGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQ 134
Query: 134 KF-----DF---------ANTTALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLGIEA 179
F D+ + A++ VQ++LMGF E R + G E
Sbjct: 135 IFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR----VGGGPLGE--------- 181
Query: 180 ALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVGPI 239
G YPGG F+PLGLA D + E K+KE+KNGRLAM +M GF VQA VT GPI
Sbjct: 182 ---GLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
Query: 240 DNLLTHLSDPFNKN 253
+NL H++DP N
Sbjct: 238 ENLFDHVADPVANN 251
>AK058312
Length = 266
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 98/195 (50%), Gaps = 32/195 (16%)
Query: 75 FGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIR--VSGINNLPVWFEAGA 132
+G+D GL +P E++H R+AM G G + +++ V PVWF+AGA
Sbjct: 76 YGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGA 135
Query: 133 TKF-----DF---------ANTTALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLGIE 178
F D+ + A+ Q++LMG E R IN +G L
Sbjct: 136 QIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYR----INGLPGVGDGNDL--- 188
Query: 179 AALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVGP 238
YPGG F+PLGLA D E K+KEIKNGRLAM +M GF VQA VT GP
Sbjct: 189 ---------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IDNLLTHLSDPFNKN 253
++NLL HL+DP N N
Sbjct: 240 LENLLDHLADPVNNN 254
>Os07g0562700 Similar to Type III chlorophyll a/b-binding protein (Fragment)
Length = 266
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 97/195 (49%), Gaps = 32/195 (16%)
Query: 75 FGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIR--VSGINNLPVWFEAGA 132
+G+D GL +P E++H R+AM G G + +++ V PVWF+AGA
Sbjct: 76 YGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGA 135
Query: 133 TKF-----DF---------ANTTALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLGIE 178
F D+ + A+ Q++LMG E R IN +G L
Sbjct: 136 QIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYR----INGLPGVGDGNDL--- 188
Query: 179 AALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVGP 238
YPGG F+PLGLA D E K+KEIKNGRLAM +M GF VQA VT GP
Sbjct: 189 ---------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IDNLLTHLSDPFNKN 253
++NLL HL+DP N
Sbjct: 240 LENLLDHLADPVANN 254
>Os07g0558400 Similar to Chlorophyll a/b-binding protein CP29 precursor
Length = 290
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 95/183 (51%), Gaps = 35/183 (19%)
Query: 89 LKWYVQAELVHCRFAMAGVAGILATDLIRVSGINNLPVWFEAGATKFDFANT-------- 140
L+ + + EL+H R+AM G L+ + + +G+ W +AG + ++
Sbjct: 132 LQRFRECELIHGRWAMLATLGALSVEWL--TGVT----WQDAGKVELVDGSSYLGQPLPF 185
Query: 141 --TALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLGIEAALAGSQPGYPGGPLFNPLG 198
+ L ++++L++G+ E +R A L + YPGG F+PLG
Sbjct: 186 SISTLIWIEVLVIGYIEFQR-------------------NAELDPEKRLYPGGSYFDPLG 226
Query: 199 LAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVGPIDNLLTHLSDPFNKNIIHTL 258
LA D E + +L EIK+ RLAMVA LGF VQA+ T GP++N THLSDP + I T
Sbjct: 227 LASDPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTF 286
Query: 259 SSS 261
SSS
Sbjct: 287 SSS 289
>D85512
Length = 124
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 39/50 (78%)
Query: 210 KLKEIKNGRLAMVAMLGFIVQASVTHVGPIDNLLTHLSDPFNKNIIHTLS 259
KLKEIKNGRLAM +MLGF +QA VT GP++NL HLSDPF N++ +S
Sbjct: 66 KLKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVIS 115
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,023,907
Number of extensions: 294288
Number of successful extensions: 626
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 580
Number of HSP's successfully gapped: 18
Length of query: 261
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 162
Effective length of database: 11,866,615
Effective search space: 1922391630
Effective search space used: 1922391630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)