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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0600900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Chlorophyll a-b binding protein 2, chloroplast precursor (LHCII type I CAB-2) (LHCP).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.6 (0.0486) R2 : 0.673
β1 : -1.03 (0.178) R2dD : 0.0255 R2D : 0.0372
β2 : 1.86 (0.16) R2dC : 0.178 R2C : 0.437
β3 : -1.64 (0.137) R2dE : 0.197 R2E : 0.454
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.288 (0.104) R2dN8 : 0.00771 R2N8 : 0.00316
σ : 0.908
deviance : 379.89
__
_____
C
peak time of C : 13.5
E
wheather : temperature
threshold : 20.53
memory length : 15
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20
open length of G : 8.85

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
362.78 0.895 15.6 -0.854 1.87 -1.68 2.22 2.38 0.361 13.7 20.6 11 20 8.88
376.22 0.903 15.6 -1.04 1.93 -1.61 1.54 -- 0.33 13.7 20.74 14 20 8.88
378.88 0.907 15.6 -0.746 1.92 -1.64 -- 1.61 0.327 13.6 20.61 12 20.1 8.75
379.89 0.908 15.6 -1.03 1.86 -1.64 -- -- 0.288 13.5 20.53 15 20 8.85
476.61 1.02 15.7 -1.14 -- -2.45 -- -0.259 -0.0144 -- 18.02 76 20.1 8.98
494.08 1.04 15.6 -1.23 3.14 -- 1.32 -- 0.139 13.3 -- -- -- --
501.13 1.05 15.6 -1.19 3.14 -- -- -- 0.145 13.2 -- -- -- --
443.02 0.98 15.6 -0.575 -- -2.77 -- -- 0.0268 -- 18.39 124 19.4 9.07
407.52 0.94 15.6 -- 1.87 -1.69 -- -- 0.396 13.6 20.5 16 20 8.87
1111.06 1.56 15.6 -1.31 -- -- -- -- 0.081 -- -- -- -- --
538.31 1.09 15.6 -- 3.16 -- -- -- 0.277 13.3 -- -- -- --
457.96 0.997 15.6 -- -- -2.76 -- -- 0.0418 -- 18.3 125 19.4 9.12
1156.3 1.59 15.6 -- -- -- -- -- 0.226 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 377.75 temperature 10.0 270 > th dose dependent rect. 18 9
2 379.75 temperature 20.0 10 > th dose independent rect. 20 9
5 383.27 temperature 20.0 90 > th dose independent rect. 20 8
11 388.30 temperature 20.0 90 > th dose independent rect. 9 19
24 393.33 temperature 20.0 10 > th dose independent rect. 9 20
33 395.95 temperature 20.0 10 > th dose independent rect. 18 11
39 396.49 temperature 15.0 10 > th dose dependent rect. 20 9
86 403.26 temperature 20.0 270 > th dose independent rect. 23 2
139 410.74 temperature 10.0 1440 > th dose independent rect. 5 5
142 410.74 atmosphere 995.0 1440 > th dose independent rect. 5 5
143 410.74 atmosphere 1015.0 1440 < th dose independent rect. 5 5
144 410.74 temperature 10.0 1440 > th dose independent rect. 10 19
151 411.14 atmosphere 1010.0 270 < th dose independent rect. 18 9
160 412.03 temperature 20.0 10 > th dose dependent rect. 23 6
181 414.25 temperature 10.0 270 > th dose dependent rect. 4 2
190 415.02 temperature 10.0 90 > th dose dependent rect. 9 19
194 415.61 atmosphere 1015.0 270 < th dose independent rect. 7 20
195 415.64 humidity 50.0 4320 > th dose independent rect. 5 5
208 416.61 temperature 10.0 270 > th dose dependent rect. 3 4
218 417.26 humidity 80.0 270 > th dose independent rect. 3 4
223 417.71 atmosphere 1015.0 90 < th dose independent rect. 9 19
244 419.22 radiation 1.0 10 < th dose dependent sin 10 NA
245 419.24 wind 9.0 270 < th dose independent rect. 7 20
250 419.47 radiation 20.0 270 < th dose independent rect. 3 4
252 419.58 radiation 10.0 270 < th dose independent rect. 4 2
253 419.61 humidity 80.0 270 > th dose independent rect. 4 2
264 420.08 precipitation 0.1 270 < th dose independent rect. 7 20
265 420.08 precipitation 0.1 270 < th dose dependent rect. 7 20
275 420.39 wind 9.0 270 < th dose independent rect. 3 4
276 420.39 temperature 10.0 270 > th dose independent rect. 3 4
278 420.39 temperature 30.0 270 < th dose independent rect. 3 4
279 420.39 humidity 50.0 270 > th dose independent rect. 3 4
281 420.39 atmosphere 995.0 270 > th dose independent rect. 3 4
282 420.39 atmosphere 1015.0 270 < th dose independent rect. 3 4
284 420.39 temperature 10.0 270 > th dose independent rect. 7 20
285 420.39 temperature 15.0 720 > th dose dependent rect. 16 3
286 420.46 radiation 40.0 270 < th dose dependent rect. 3 4
294 420.68 temperature 10.0 10 > th dose dependent rect. 9 20
299 421.28 precipitation 0.1 270 < th dose independent rect. 6 22
300 421.28 precipitation 0.1 270 < th dose dependent rect. 6 22
303 421.57 precipitation 0.1 270 < th dose independent rect. 3 4
304 421.57 precipitation 0.1 270 < th dose dependent rect. 3 4
305 421.58 humidity 50.0 270 > th dose dependent rect. 3 4
307 421.63 atmosphere 1015.0 10 < th dose independent rect. 9 20
317 422.10 wind 9.0 270 < th dose independent rect. 6 22
321 422.15 radiation 20.0 270 < th dose dependent rect. 4 2
327 422.29 temperature 20.0 270 > th dose independent rect. 4 2
341 422.52 wind 7.0 270 < th dose independent rect. 4 2
345 422.61 precipitation 0.1 90 < th dose independent rect. 9 19
346 422.61 precipitation 0.1 90 < th dose dependent rect. 9 19
347 422.64 atmosphere 1010.0 270 < th dose independent rect. 4 2
349 422.65 temperature 10.0 270 > th dose independent rect. 4 2
351 422.65 temperature 30.0 270 < th dose independent rect. 4 2
352 422.65 humidity 50.0 270 > th dose independent rect. 4 2
355 422.65 atmosphere 995.0 270 > th dose independent rect. 4 2
360 422.65 temperature 10.0 270 > th dose independent rect. 6 22
371 422.91 wind 9.0 90 < th dose independent rect. 9 19
381 422.95 temperature 10.0 90 > th dose independent rect. 9 19
385 422.97 precipitation 0.1 270 < th dose independent rect. 4 2
386 422.97 precipitation 0.1 270 < th dose dependent rect. 4 2
395 423.20 temperature 10.0 10 > th dose dependent rect. 5 4
419 423.61 atmosphere 1010.0 10 < th dose independent rect. 20 9
424 423.70 humidity 50.0 270 > th dose dependent rect. 4 2
431 423.89 wind 1.0 10 > th dose independent rect. 4 5
432 423.97 temperature 20.0 10 > th dose independent rect. 5 4
435 424.18 humidity 50.0 90 > th dose independent rect. 9 19
437 424.20 temperature 10.0 1440 > th dose independent rect. 19 10
440 424.20 temperature 30.0 1440 < th dose independent rect. 19 10
444 424.20 humidity 50.0 1440 > th dose independent rect. 19 10
446 424.20 atmosphere 995.0 1440 > th dose independent rect. 19 10
447 424.20 radiation 20.0 1440 < th dose independent rect. 19 10
459 424.20 temperature 10.0 1440 > th dose independent rect. 5 14
464 424.24 radiation 1.0 30 < th dose independent sin 11 NA
472 424.36 wind 9.0 1440 < th dose independent rect. 5 4
487 424.42 wind 7.0 270 < th dose independent rect. 17 10
503 424.80 wind 1.0 90 > th dose independent rect. 4 5
526 425.11 atmosphere 995.0 270 > th dose independent rect. 7 20
528 425.13 wind 9.0 270 < th dose dependent rect. 3 4
539 425.28 atmosphere 995.0 270 > th dose dependent rect. 3 4
541 425.29 wind 1.0 90 > th dose independent rect. 9 19
557 425.36 wind 9.0 10 < th dose dependent rect. 5 4
577 425.44 atmosphere 995.0 90 > th dose independent rect. 9 19
584 425.54 humidity 50.0 270 > th dose independent rect. 7 20
588 425.57 atmosphere 995.0 270 > th dose dependent rect. 4 2
629 426.06 radiation 40.0 10 < th dose independent rect. 5 4
641 426.08 wind 9.0 90 < th dose dependent rect. 18 10
644 426.13 wind 1.0 270 > th dose independent rect. 4 2
662 426.41 precipitation 0.1 10 < th dose independent rect. 9 20
664 426.41 precipitation 0.1 10 < th dose dependent rect. 9 20
677 426.71 wind 9.0 270 < th dose dependent rect. 4 2
682 426.78 wind 5.0 10 < th dose independent rect. 5 4
693 426.92 temperature 10.0 10 > th dose independent rect. 5 4
695 426.92 temperature 30.0 10 < th dose independent rect. 5 4
696 426.92 humidity 50.0 10 > th dose independent rect. 5 4
698 426.92 atmosphere 995.0 10 > th dose independent rect. 5 4
699 426.92 atmosphere 1015.0 10 < th dose independent rect. 5 4
700 426.92 temperature 10.0 10 > th dose independent rect. 9 20
707 427.07 precipitation 0.1 10 < th dose independent rect. 5 4
708 427.07 precipitation 0.1 10 < th dose dependent rect. 5 4
721 427.25 precipitation 0.1 270 < th dose independent rect. 23 14
722 427.25 precipitation 0.1 270 < th dose dependent rect. 23 14
738 427.41 wind 9.0 10 < th dose independent rect. 9 20
746 427.54 atmosphere 1015.0 270 < th dose independent rect. 23 14
764 427.81 temperature 10.0 1440 > th dose independent rect. 21 8
767 427.81 temperature 30.0 1440 < th dose independent rect. 21 8
771 427.81 humidity 50.0 1440 > th dose independent rect. 21 8
777 427.81 atmosphere 995.0 1440 > th dose independent rect. 21 8
778 427.81 radiation 20.0 1440 < th dose independent rect. 21 8
790 427.81 temperature 10.0 1440 > th dose independent rect. 5 16
814 428.09 temperature 30.0 270 < th dose dependent rect. 16 15
817 428.13 wind 3.0 270 < th dose independent rect. 24 1
819 428.14 wind 1.0 270 > th dose independent rect. 7 20
826 428.19 radiation 40.0 10 < th dose dependent rect. 5 4
849 428.38 radiation 1.0 30 > th dose independent sin 10 NA
858 428.55 wind 3.0 10 < th dose dependent rect. 24 5
885 428.86 atmosphere 995.0 10 > th dose independent rect. 9 20
950 429.74 atmosphere 995.0 10 > th dose dependent rect. 5 4
965 429.87 humidity 50.0 10 > th dose dependent rect. 5 5
981 430.02 wind 9.0 10 < th dose dependent rect. 20 9