BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0600900 Os01g0600900|AK121563
(261 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast... 494 e-140
Os01g0720500 Similar to Type I chlorophyll a/b-binding prot... 469 e-133
Os09g0346500 Similar to Chlorophyll a-b binding protein, ch... 469 e-133
Os03g0592500 Similar to Photosystem II type II chlorophyll ... 401 e-112
AK058312 346 1e-95
Os07g0562700 Similar to Type III chlorophyll a/b-binding pr... 336 8e-93
Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment) 198 3e-51
Os09g0296800 Chlorophyll A-B binding protein family protein 198 3e-51
Os06g0320500 Similar to Light-harvesting complex I (Fragment) 136 2e-32
AK060800 136 2e-32
Os07g0577600 Similar to Type II chlorophyll a/b binding pro... 131 5e-31
Os02g0764500 Similar to Lhca5 protein 125 3e-29
Os09g0439500 Similar to Type II chlorophyll a/b binding pro... 119 2e-27
Os07g0558400 Similar to Chlorophyll a/b-binding protein CP2... 112 4e-25
Os08g0435900 Similar to LHC I type IV chlorophyll binding p... 106 2e-23
Os02g0197600 Similar to PSI type III chlorophyll a/b-bindin... 86 2e-17
Os04g0457000 Similar to Chlorophyll a/b-binding protein CP2... 79 2e-15
D85512 79 5e-15
>Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast precursor (LHCII
type I CAB-2) (LHCP)
Length = 261
Score = 494 bits (1272), Expect = e-140, Method: Compositional matrix adjust.
Identities = 247/261 (94%), Positives = 247/261 (94%)
Query: 1 MAAATMALSSPALAGKAAAKVFGEGRITMRXXXXXXXXXXXXXXWYGADRVLYLGPLSGE 60
MAAATMALSSPALAGKAAAKVFGEGRITMR WYGADRVLYLGPLSGE
Sbjct: 1 MAAATMALSSPALAGKAAAKVFGEGRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGE 60
Query: 61 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 120
PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK
Sbjct: 61 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 120
Query: 121 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEV 180
FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEV
Sbjct: 121 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEV 180
Query: 181 VDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 240
VDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD
Sbjct: 181 VDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 240
Query: 241 HLADPVNNNAWAYATNFVPGK 261
HLADPVNNNAWAYATNFVPGK
Sbjct: 241 HLADPVNNNAWAYATNFVPGK 261
>Os01g0720500 Similar to Type I chlorophyll a/b-binding protein b (Fragment)
Length = 265
Score = 469 bits (1208), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/265 (90%), Positives = 243/265 (91%), Gaps = 4/265 (1%)
Query: 1 MAAATMALSSPA-LAGKAAA--KVFGEGRITMRXXXXXXXXXXXXXX-WYGADRVLYLGP 56
MAA+TMALSSPA LAGKA A KVFGEGR+TMR WYGADRVLYLGP
Sbjct: 1 MAASTMALSSPAALAGKAVANAKVFGEGRVTMRKSAAKPKPAAASGSPWYGADRVLYLGP 60
Query: 57 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 116
LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLAR
Sbjct: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 117 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 176
NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIW QVVLMGAVEGYR+AGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVAGGP 180
Query: 177 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 236
LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 237 NLADHLADPVNNNAWAYATNFVPGK 261
NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265
>Os09g0346500 Similar to Chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP)
Length = 265
Score = 469 bits (1207), Expect = e-133, Method: Compositional matrix adjust.
Identities = 237/265 (89%), Positives = 242/265 (91%), Gaps = 4/265 (1%)
Query: 1 MAAATMALSSPALAGKA---AAKVFGEGRITMRXXXXXXXXXXXXXX-WYGADRVLYLGP 56
MAAATMALSSP +A A ++ +FGE RITMR WYGADRVLYLGP
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGP 60
Query: 57 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 116
LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR
Sbjct: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 120
Query: 117 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 176
NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 180
Query: 177 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 236
LGEVVDPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 237 NLADHLADPVNNNAWAYATNFVPGK 261
NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265
>Os03g0592500 Similar to Photosystem II type II chlorophyll a/b binding protein
(Fragment)
Length = 263
Score = 401 bits (1030), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/237 (81%), Positives = 210/237 (88%), Gaps = 4/237 (1%)
Query: 25 GRITMRXXXXXXXXXXXXXXWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADP 84
GRITMR WYG DR YLGP S + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 31 GRITMRRTVKSAPQSI----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 86
Query: 85 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGN 144
ETFA+NRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGN
Sbjct: 87 ETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 146
Query: 145 PSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAE 204
P+L+HAQSILAIWAVQVVLMG VEGYR+ GGPLGE +D +YPGG+FDPLGLADDP+ FAE
Sbjct: 147 PNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAE 206
Query: 205 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263
>AK058312
Length = 266
Score = 346 bits (888), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 181/240 (75%), Positives = 193/240 (80%), Gaps = 15/240 (6%)
Query: 25 GRITMRXXXXXXXXXXXXXXWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADP 84
GRITM WYG DRV YLGP S + PSYL GEFPGDYGWDTAGLSADP
Sbjct: 39 GRITM-----------SKELWYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADP 87
Query: 85 ETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLG 143
E FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFS+GGLDYLG
Sbjct: 88 EAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLG 147
Query: 144 NPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEA 201
NP+L+HAQSILA+ QVVLMG VEGYRI G P +G+ D LYPGG FDPLGLADDP
Sbjct: 148 NPNLVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGDGND-LYPGGQYFDPLGLADDPVT 206
Query: 202 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261
FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPVNNNAWAYATNFVPGK
Sbjct: 207 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLADPVNNNAWAYATNFVPGK 266
>Os07g0562700 Similar to Type III chlorophyll a/b-binding protein (Fragment)
Length = 266
Score = 336 bits (862), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 176/240 (73%), Positives = 188/240 (78%), Gaps = 15/240 (6%)
Query: 25 GRITMRXXXXXXXXXXXXXXWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADP 84
GRITM WYG DRV YLGP S + PSYL GEFPGDYGWDTAGLSADP
Sbjct: 39 GRITM-----------SKELWYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADP 87
Query: 85 ETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLG 143
E FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFS+GGLDYLG
Sbjct: 88 EAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLG 147
Query: 144 NPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEA 201
NP+L+HAQSILA+ QVVLMG VEGYRI G P +G+ D LYPGG FDPLGLADDP
Sbjct: 148 NPNLVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGDGND-LYPGGQYFDPLGLADDPVT 206
Query: 202 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261
FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAW YAT F PG
Sbjct: 207 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLADPVANNAWVYATKFTPGS 266
>Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment)
Length = 283
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/209 (54%), Positives = 140/209 (66%), Gaps = 9/209 (4%)
Query: 45 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 101
WYG DR ++L G L E P YL GE PGDYG+D GLS PE F+K + E+IH+RWA
Sbjct: 65 WYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWA 124
Query: 102 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQ 160
MLGA G + PE + G G EAVWFK G+ + L+Y GN I+ ++ A +
Sbjct: 125 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LIVAVAAE 181
Query: 161 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 220
VVL+G E YRI G ++ D L+PGG FDPLGLA DP+ A LKVKEIKNGRLAMFSM
Sbjct: 182 VVLVGGAEYYRIINGL--DLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSM 239
Query: 221 FGFFVQAIVTGKGPLENLADHLADPVNNN 249
GFF+QA VTG+GP+ENL+ HL+DP NN
Sbjct: 240 LGFFIQAYVTGEGPVENLSKHLSDPFGNN 268
>Os09g0296800 Chlorophyll A-B binding protein family protein
Length = 321
Score = 198 bits (503), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/215 (52%), Positives = 139/215 (64%), Gaps = 10/215 (4%)
Query: 45 WYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 104
WYG +R +LGP+ E P++LTGE+PGDYG+D AGL DP FA E++H RWAML
Sbjct: 101 WYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLA 160
Query: 105 ALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAVQV 161
ALG V PELL GV F E VW+K G LDYLG P A Q ++ I Q
Sbjct: 161 ALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQA 220
Query: 162 VLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGR 214
+LM E R G PLG + D YPGG+ FDPLGL+ DP AF +LKVKEIKNGR
Sbjct: 221 LLMVGPEYARYCGIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGR 280
Query: 215 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 249
LAM + GF++QA VTGKGP++NL +HL+DP++NN
Sbjct: 281 LAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNN 315
>Os06g0320500 Similar to Light-harvesting complex I (Fragment)
Length = 241
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 110/199 (55%), Gaps = 21/199 (10%)
Query: 57 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 115
+ G+P P++L G PGD+G+D GL+ PE F + +E EV H RWAML G + PE L
Sbjct: 46 MPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEAL- 104
Query: 116 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 174
G W +A GG YLGNP + ++ I ++ V + E R
Sbjct: 105 ------GLGNWVQAQEWAAEPGGQATYLGNP--VPWGTLPTILVIEFVAIAFAEHQRTME 156
Query: 175 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 230
DP YPGG+FDPLG + DP F E K+KEIKNGRLAM + GF V Q+
Sbjct: 157 K------DPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 210
Query: 231 GKGPLENLADHLADPVNNN 249
G GPLENLA HL+DP +NN
Sbjct: 211 GTGPLENLASHLSDPWHNN 229
>AK060800
Length = 241
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 110/199 (55%), Gaps = 21/199 (10%)
Query: 57 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 115
+ G+P P++L G PGD+G+D GL+ PE F + +E EV H RWAML G + PE L
Sbjct: 46 MPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEAL- 104
Query: 116 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 174
G W +A GG YLGNP + ++ I ++ V + E R
Sbjct: 105 ------GLGNWVQAQEWAAEPGGQATYLGNP--VPWGTLPTILVIEFVAIAFAEHQRTME 156
Query: 175 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 230
DP YPGG+FDPLG + DP F E K+KEIKNGRLAM + GF V Q+
Sbjct: 157 K------DPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 210
Query: 231 GKGPLENLADHLADPVNNN 249
G GPLENLA HL+DP +NN
Sbjct: 211 GTGPLENLASHLSDPWHNN 229
>Os07g0577600 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 263
Score = 131 bits (329), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 128/266 (48%), Gaps = 39/266 (14%)
Query: 1 MAAATMALSSPALAGKAAAKVF-----GEGRITMRXXXXXXXXXXXXXXWYGADRVLYLG 55
++A++ + AL G A A F GR+ +R DR ++
Sbjct: 4 VSASSSTTAVAALPGAARASSFLGGAGRSGRLLLRQAESSSARASFAVRAAAPDRPIWFP 63
Query: 56 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 115
PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L
Sbjct: 64 --GSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLT 121
Query: 116 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG- 174
+ G+ W+ AG Q Y + + ++ ++++L+G EG R A
Sbjct: 122 KIGI-LNTPSWYTAGEQ-------QYFTDTT--------TLFIIELILIGWAEGRRWADI 165
Query: 175 -GPLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFS 219
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM +
Sbjct: 166 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLA 225
Query: 220 MFGFFVQAIVTGKGPLENLADHLADP 245
+ G + QA TG GP++NL HLADP
Sbjct: 226 VMGAWFQAEYTGTGPIDNLFAHLADP 251
>Os02g0764500 Similar to Lhca5 protein
Length = 261
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 110/207 (53%), Gaps = 32/207 (15%)
Query: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 119
+PP +L G PGD+G+D GL +P + E++H R+AM G G + +L+ +G+
Sbjct: 62 DPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGI 121
Query: 120 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYR----IAGG 175
VWF+AG+ F D+ + A++ VQ++LMG E R I G
Sbjct: 122 N-NLPVWFEAGATKF-----DF---------ANTTALFFVQLLLMGFAETKRYMDFINPG 166
Query: 176 PLGEV------------VDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 222
E P YPGG F+PLGLA D E E K+KEIKNGRLAM +M G
Sbjct: 167 SQAEEGTFLGIEAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLG 226
Query: 223 FFVQAIVTGKGPLENLADHLADPVNNN 249
F VQA VT GP++NL HL+DP N N
Sbjct: 227 FIVQASVTHVGPIDNLLTHLSDPFNKN 253
>Os09g0439500 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 264
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 114/226 (50%), Gaps = 34/226 (15%)
Query: 47 GADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 106
G DR L+ PP +L G PGD+G+D GL +DPE + E++HSRWAML
Sbjct: 56 GPDRPLWFP--GSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVA 113
Query: 107 GCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGA 166
G + PE+L + G + W AG++ DY +P ++ Q+ LMG
Sbjct: 114 GILVPEVLEKWGF-MEDYSWIDAGAR-------DYFADP--------WTLFVSQMALMGW 157
Query: 167 VEGYRIAG--GPLGEVVDPL------------YPGGSFDPLGL--ADDPEAFAELKVKEI 210
EG R A P V+P YPGG + G PE L+ KEI
Sbjct: 158 AEGRRWADYLNPGCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEI 217
Query: 211 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATN 256
KNGRLAM + GF+ QA+ TG+GP++NL HLADP + N ++ T+
Sbjct: 218 KNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTS 263
>Os07g0558400 Similar to Chlorophyll a/b-binding protein CP29 precursor
Length = 290
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 109/235 (46%), Gaps = 64/235 (27%)
Query: 62 PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN-------------------- 90
P YL G GDYG+D GL E AKN
Sbjct: 64 PDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGEIIGTRFETGEVKSTPF 123
Query: 91 ------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG 138
RE E+IH RWAML LG + E L GV W AG +G
Sbjct: 124 QPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV-----TWQDAGKVELVDGS 176
Query: 139 LDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGS-FDPLG 194
YLG P ++ IW ++V+++G +E R A +DP LYPGGS FDPLG
Sbjct: 177 -SYLGQPLPFSISTL--IW-IEVLVIGYIEFQRNAE------LDPEKRLYPGGSYFDPLG 226
Query: 195 LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 249
LA DPE L++ EIK+ RLAM + GF VQA TGKGPL N A HL+DP++
Sbjct: 227 LASDPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTT 281
>Os08g0435900 Similar to LHC I type IV chlorophyll binding protein (Fragment)
Length = 244
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 96/202 (47%), Gaps = 34/202 (16%)
Query: 62 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 121
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+L + G+
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGL-I 114
Query: 122 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--GPLGE 179
W+ AG Y + S ++ ++ +L VE R P
Sbjct: 115 DAPQWYDAGKAT-------YFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGCV 159
Query: 180 VVDPL------------YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 227
DP+ YPG F+PL E E K KE+ NGRLAM + GF VQ
Sbjct: 160 NQDPIFKSYSLPPHECGYPGSVFNPLNF----EPTLEAKEKELANGRLAMLAFLGFLVQH 215
Query: 228 IVTGKGPLENLADHLADPVNNN 249
VT KGP +NL HL+DP +N
Sbjct: 216 NVTQKGPFDNLLQHLSDPWHNT 237
>Os02g0197600 Similar to PSI type III chlorophyll a/b-binding protein
Length = 180
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 182 DPLYPGGS-FDPLGLADDPEA-FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 239
+P YPGG F+PLG EA ELK+KEIKNGRLAM + GF VQA+ TG GP++NL
Sbjct: 103 EPAYPGGPLFNPLGFGTKSEAEMKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLL 162
Query: 240 DHLADPVNNN 249
DHLADPV+NN
Sbjct: 163 DHLADPVHNN 172
>Os04g0457000 Similar to Chlorophyll a/b-binding protein CP24, photosystem II
(Fragment)
Length = 252
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 92/207 (44%), Gaps = 50/207 (24%)
Query: 62 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 121
P +L G PGD+G+D GL DP RE E+IH RWAM LG + A +GV
Sbjct: 64 PPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ--AWSGVP- 120
Query: 122 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--GPLGE 179
WF+AG+Q P I S ++ Q++LMG VE R P +
Sbjct: 121 ----WFEAGAQ------------PEAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQ 164
Query: 180 VVD---PL---------------YPGGS-FDPLGLA---------DDPEAFAELKVKEIK 211
V+ P YPGG FDPLGL D + LK+ EIK
Sbjct: 165 AVEWATPWSRTAENFSNATGEQGYPGGKFFDPLGLGGETRDGVYIPDTDKLDRLKLAEIK 224
Query: 212 NGRLAMFSMFGFFVQAIVTGKGPLENL 238
+ RLAM +M F+ +A GK PL L
Sbjct: 225 HARLAMLAMLIFYFEA-GQGKTPLGAL 250
>D85512
Length = 124
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 41/47 (87%)
Query: 203 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 249
A LK+KEIKNGRLAMFSM GFF+QA VTG+GP+ENL+ HL+DP NN
Sbjct: 63 ALLKLKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNN 109
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.139 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,533,187
Number of extensions: 405198
Number of successful extensions: 855
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 805
Number of HSP's successfully gapped: 18
Length of query: 261
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 162
Effective length of database: 11,866,615
Effective search space: 1922391630
Effective search space used: 1922391630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)