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Os09g0439500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Type II chlorophyll a/b binding protein from photosystem I precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.6 (0.0379) R2 : 0.826
β1 : -1.22 (0.138) R2dD : 0.0327 R2D : 0.00771
β2 : 2.46 (0.159) R2dC : 0.28 R2C : 0.598
β3 : -1.79 (0.158) R2dE : 0.151 R2E : 0.463
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -2.82 (0.37) R2dD*E : 0.0242 R2D*E : 0.0062
γ1 : -0.618 (0.0803) R2dN8 : 0.0321 R2N8 : 0.0163
σ : 0.703
deviance : 228.03
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_____
C
peak time of C : 21.8
E
wheather : radiation
threshold : 35.02
memory length : 193
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.48
open length of G : 6.82

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
219.1 0.695 13.6 -1.26 2.16 -2.02 -3.65 -5.77 -0.681 21.6 37.66 242 4.14 7.15
251.98 0.739 13.6 -1.3 1.52 -2.6 0.733 -- -0.752 22.8 40.1 216 3.65 7.53
228.03 0.703 13.6 -1.22 2.46 -1.79 -- -2.82 -0.618 21.8 35.02 193 4.48 6.82
252.63 0.74 13.6 -1.25 2.38 -1.69 -- -- -0.668 21.7 40.22 168 4.51 7.35
310.85 0.821 13.5 -1.24 -- -3.22 -- -2.21 -0.39 -- 53.36 106 5.1 7.95
314.03 0.831 13.7 -1.23 3.95 -- 1.6 -- -0.672 21.7 -- -- -- --
323.71 0.843 13.7 -1.29 3.94 -- -- -- -0.675 21.7 -- -- -- --
268.39 0.763 13.5 -1.06 -- -3.35 -- -- -0.523 -- 50.58 190 3.73 9.36
295.58 0.801 13.6 -- 2.34 -1.71 -- -- -0.559 21.6 44.01 159 4.48 7.98
1248 1.65 13.6 -1.26 -- -- -- -- -0.68 -- -- -- -- --
367.66 0.897 13.6 -- 3.94 -- -- -- -0.531 21.7 -- -- -- --
302.08 0.809 13.5 -- -- -3.45 -- -- -0.558 -- 50.21 279 2.73 9.55
1289.57 1.68 13.5 -- -- -- -- -- -0.541 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 224.74 radiation 40.0 270 < th dose independent rect. 4 7
2 226.15 temperature 30.0 90 < th dose independent rect. 5 8
3 226.63 radiation 40.0 270 < th dose independent rect. 3 9
7 230.12 radiation 40.0 270 < th dose independent rect. 3 21
8 230.13 radiation 40.0 270 < th dose dependent rect. 5 6
10 231.24 radiation 40.0 270 < th dose independent rect. 4 19
16 233.08 temperature 30.0 270 < th dose dependent rect. 5 6
17 233.17 radiation 20.0 270 < th dose independent rect. 5 5
37 237.42 atmosphere 995.0 10 > th dose dependent rect. 6 7
39 237.61 atmosphere 995.0 90 > th dose dependent rect. 5 8
66 240.24 radiation 40.0 270 < th dose dependent rect. 5 18
70 240.61 temperature 20.0 90 > th dose independent rect. 5 8
87 242.54 wind 7.0 270 < th dose independent rect. 23 16
89 242.78 temperature 10.0 270 > th dose dependent rect. 23 16
96 243.61 radiation 20.0 270 < th dose independent rect. 17 17
97 243.69 atmosphere 1000.0 10 > th dose independent rect. 6 7
129 245.74 atmosphere 995.0 90 > th dose dependent rect. 6 17
142 246.20 atmosphere 995.0 10 > th dose dependent rect. 6 18
160 247.32 atmosphere 1000.0 10 > th dose independent rect. 6 18
170 247.68 temperature 15.0 270 > th dose independent rect. 3 8
172 247.69 precipitation 0.1 270 < th dose independent rect. 11 17
173 247.69 precipitation 0.1 270 < th dose dependent rect. 11 17
178 247.82 wind 9.0 270 < th dose independent rect. 11 17
196 248.54 radiation 1.0 90 < th dose dependent sin 5 NA
202 248.72 radiation 30.0 270 < th dose independent rect. 15 8
205 248.76 atmosphere 1015.0 270 < th dose independent rect. 4 7
206 248.76 temperature 10.0 270 > th dose independent rect. 11 17
207 248.87 temperature 10.0 270 > th dose independent rect. 15 8
208 248.87 temperature 10.0 270 > th dose independent rect. 23 16
215 249.12 precipitation 0.1 270 < th dose independent rect. 4 7
217 249.12 precipitation 0.1 270 < th dose dependent rect. 4 7
219 249.17 wind 9.0 270 < th dose independent rect. 4 7
226 249.31 atmosphere 995.0 270 > th dose independent rect. 23 16
229 249.39 wind 9.0 10 < th dose dependent rect. 6 7
234 249.55 wind 9.0 270 < th dose independent rect. 15 8
239 249.62 precipitation 0.1 270 < th dose independent rect. 23 16
240 249.62 precipitation 0.1 270 < th dose dependent rect. 23 16
244 249.67 radiation 1.0 90 > th dose independent sin 6 NA
269 250.16 humidity 60.0 10 > th dose independent rect. 6 6
272 250.39 radiation 1.0 90 < th dose independent sin 6 NA
274 250.53 wind 5.0 10 < th dose independent rect. 24 6
276 250.54 temperature 20.0 10 > th dose independent rect. 6 7
277 250.55 radiation 40.0 270 < th dose dependent rect. 17 17
285 250.87 atmosphere 1015.0 270 < th dose independent rect. 23 16
290 250.92 radiation 30.0 10 < th dose dependent rect. 24 6
293 250.98 humidity 50.0 270 > th dose independent rect. 4 7
294 251.02 wind 9.0 90 < th dose independent rect. 13 16
307 251.25 wind 5.0 270 < th dose independent rect. 23 5
309 251.27 radiation 40.0 10 < th dose independent rect. 6 6
315 251.45 radiation 10.0 10 < th dose dependent rect. 24 17
327 251.66 temperature 10.0 90 > th dose independent rect. 13 16
332 251.81 radiation 40.0 270 < th dose dependent rect. 15 8
337 251.91 wind 7.0 270 < th dose independent rect. 22 7
341 251.96 temperature 10.0 10 > th dose independent rect. 24 6
342 251.96 temperature 30.0 10 < th dose independent rect. 24 6
343 251.96 humidity 50.0 10 > th dose independent rect. 24 6
346 251.96 atmosphere 995.0 10 > th dose independent rect. 24 6
347 251.96 radiation 20.0 10 < th dose independent rect. 24 6
350 251.96 temperature 10.0 10 > th dose independent rect. 6 18
357 252.07 wind 9.0 10 < th dose dependent rect. 24 6
360 252.10 radiation 1.0 90 > th dose independent rect. 5 8
361 252.14 precipitation 0.1 270 < th dose independent rect. 23 5
364 252.14 precipitation 0.1 270 < th dose dependent rect. 23 5
377 252.21 temperature 15.0 270 > th dose independent rect. 4 19
379 252.24 temperature 15.0 270 > th dose independent rect. 5 17
389 252.38 atmosphere 1015.0 10 < th dose independent rect. 24 6
393 252.43 temperature 10.0 270 > th dose independent rect. 23 5
394 252.43 temperature 30.0 270 < th dose independent rect. 23 5
395 252.43 humidity 50.0 270 > th dose independent rect. 23 5
398 252.43 atmosphere 995.0 270 > th dose independent rect. 23 5
399 252.43 radiation 1.0 270 < th dose independent rect. 23 5
405 252.43 radiation 1.0 270 < th dose dependent rect. 23 5
411 252.44 precipitation 0.1 270 < th dose independent rect. 22 7
413 252.44 precipitation 0.1 270 < th dose dependent rect. 22 7
416 252.49 humidity 50.0 270 > th dose dependent rect. 4 7
424 252.59 radiation 1.0 270 < th dose dependent rect. 22 7
425 252.61 temperature 10.0 270 > th dose independent rect. 22 7
426 252.61 temperature 30.0 270 < th dose independent rect. 22 7
427 252.61 humidity 50.0 270 > th dose independent rect. 22 7
430 252.61 atmosphere 995.0 270 > th dose independent rect. 22 7
431 252.61 radiation 20.0 270 < th dose independent rect. 22 7
437 252.65 radiation 40.0 270 < th dose dependent rect. 22 7
446 252.78 radiation 1.0 270 < th dose independent rect. 22 7
460 253.13 wind 1.0 270 > th dose independent rect. 9 8
461 253.14 temperature 10.0 270 > th dose dependent rect. 8 9
488 253.42 wind 1.0 270 > th dose independent rect. 23 5
498 253.51 wind 1.0 270 > th dose independent rect. 16 7
518 253.57 precipitation 0.1 10 < th dose independent rect. 24 6
519 253.57 precipitation 0.1 10 < th dose dependent rect. 24 6
524 253.63 precipitation 0.1 10 < th dose independent rect. 6 18
525 253.63 precipitation 0.1 10 < th dose dependent rect. 6 18
532 253.80 wind 9.0 10 < th dose independent rect. 6 18
533 253.80 temperature 30.0 270 < th dose dependent rect. 5 16
541 253.92 wind 9.0 10 < th dose independent rect. 13 17
561 254.04 atmosphere 995.0 270 > th dose independent rect. 16 7
566 254.07 atmosphere 1015.0 270 < th dose independent rect. 23 5
589 254.35 wind 9.0 270 < th dose independent rect. 4 19
604 254.53 atmosphere 1015.0 10 < th dose independent rect. 6 18
637 254.76 temperature 30.0 90 < th dose independent rect. 19 16
640 254.77 temperature 10.0 10 > th dose independent rect. 6 6
643 254.77 atmosphere 1015.0 10 < th dose independent rect. 6 6
644 254.77 temperature 10.0 10 > th dose independent rect. 12 18
645 254.79 precipitation 0.1 10 < th dose independent rect. 6 6
647 254.79 precipitation 0.1 10 < th dose dependent rect. 6 6
661 254.90 wind 9.0 270 < th dose independent rect. 5 17
662 254.91 temperature 30.0 30 < th dose independent rect. 6 18
664 254.94 wind 5.0 10 < th dose independent rect. 6 7
672 255.08 wind 9.0 10 < th dose independent rect. 6 7
674 255.10 wind 1.0 270 > th dose independent rect. 11 16
678 255.14 temperature 10.0 1440 > th dose independent rect. 1 6
681 255.14 temperature 30.0 1440 < th dose independent rect. 1 6
685 255.14 humidity 50.0 1440 > th dose independent rect. 1 6
690 255.14 atmosphere 995.0 1440 > th dose independent rect. 1 6
691 255.14 radiation 40.0 1440 < th dose independent rect. 1 6
695 255.14 temperature 10.0 1440 > th dose independent rect. 7 18
698 255.14 radiation 1.0 270 < th dose dependent rect. 22 15
724 255.29 atmosphere 1015.0 270 < th dose independent rect. 5 17
730 255.44 radiation 10.0 30 < th dose dependent rect. 24 14
736 255.52 radiation 1.0 90 < th dose independent rect. 23 17
753 255.65 radiation 1.0 90 < th dose independent rect. 23 14
776 255.87 wind 9.0 270 < th dose dependent rect. 23 5
779 255.89 atmosphere 1015.0 90 < th dose dependent rect. 1 16
797 256.08 temperature 10.0 1440 > th dose independent rect. 7 7
800 256.08 atmosphere 995.0 1440 > th dose independent rect. 7 7
801 256.08 temperature 10.0 1440 > th dose independent rect. 14 17
829 256.37 radiation 10.0 30 < th dose dependent rect. 24 11
848 256.52 radiation 1.0 10 > th dose independent rect. 6 6
851 256.54 radiation 30.0 10 < th dose independent rect. 6 18
868 256.70 precipitation 0.1 270 < th dose independent rect. 15 8
872 256.70 precipitation 0.1 270 < th dose dependent rect. 15 8
874 256.72 humidity 50.0 10 > th dose dependent rect. 24 6
891 256.95 wind 9.0 270 < th dose dependent rect. 4 7
899 257.07 atmosphere 1015.0 270 < th dose independent rect. 22 7
904 257.15 temperature 25.0 270 > th dose independent rect. 8 9
921 257.23 precipitation 0.1 270 < th dose independent rect. 5 17
923 257.23 precipitation 0.1 270 < th dose dependent rect. 5 17
927 257.27 precipitation 0.1 270 < th dose independent rect. 4 19
928 257.27 precipitation 0.1 270 < th dose dependent rect. 4 19
982 257.55 wind 9.0 10 < th dose dependent rect. 6 18