Os01g0720500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Type I chlorophyll a/b-binding protein b (Fragment).
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Os01g0720500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Type I chlorophyll a/b-binding protein b (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 767.64 | 1.3 | 13.2 | -6.09 | 3.56 | 2.18 | 3.13 | 5.21 | -2.66 | 8.53 | 20.75 | 12913 | -- | -- |
| 832.51 | 1.34 | 13.2 | -6.36 | 3.58 | 2.33 | 3.15 | -- | -2.84 | 8.26 | 20 | 14819 | -- | -- |
| 795.35 | 1.31 | 13.2 | -5.99 | 3.51 | 2.23 | -- | 4.97 | -2.64 | 8.58 | 3.464 | 12939 | -- | -- |
| 853.88 | 1.36 | 13.2 | -6.65 | 3.56 | 2.17 | -- | -- | -2.69 | 8.37 | -2.796 | 12840 | -- | -- |
| 1487.79 | 1.8 | 13.3 | -6.05 | -- | 2.26 | -- | 4.81 | -2.65 | -- | -23.39 | 13075 | -- | -- |
| 1027.03 | 1.5 | 13 | -7.08 | 3.53 | -- | 3.27 | -- | -2.19 | 8.34 | -- | -- | -- | -- |
| 1058.91 | 1.52 | 13 | -6.97 | 3.52 | -- | -- | -- | -2.18 | 8.52 | -- | -- | -- | -- |
| 1538.06 | 1.83 | 13.3 | -6.72 | -- | 2.45 | -- | -- | -2.85 | -- | -0.00126 | 13092 | -- | -- |
| 1601.68 | 1.86 | 13 | -- | 3.44 | 5.04 | -- | -- | -1.83 | 8.65 | 48.63 | 23849 | -- | -- |
| 1751.28 | 1.96 | 13.1 | -6.96 | -- | -- | -- | -- | -2.15 | -- | -- | -- | -- | -- |
| 2340.88 | 2.26 | 12.8 | -- | 3.49 | -- | -- | -- | -1.41 | 8.67 | -- | -- | -- | -- |
| 2224.94 | 2.2 | 13 | -- | -- | 5.63 | -- | -- | -1.31 | -- | 52.65 | 26296 | -- | -- |
| 3029 | 2.57 | 12.9 | -- | -- | -- | -- | -- | -1.38 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 751.03 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 9 | 753.99 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 21 |
| 15 | 755.32 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 24 | 19 |
| 18 | 755.60 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 15 |
| 27 | 756.23 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 15 |
| 49 | 756.36 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 20 |
| 51 | 756.45 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 11 | 18 |
| 82 | 757.63 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 0 | NA |
| 112 | 758.19 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 12 |
| 113 | 758.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 23 |
| 122 | 758.54 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 12 | 2 |
| 125 | 758.63 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 164 | 759.13 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 12 | 4 |
| 165 | 759.15 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 172 | 759.30 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 14 | NA |
| 173 | 759.30 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 24 | 23 |
| 176 | 759.43 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 180 | 759.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 182 | 759.61 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 23 |
| 186 | 759.72 | precipitation | 0.1 | 43200 | > th | dose dependent | no | NA | NA |
| 209 | 759.91 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 257 | 760.46 | radiation | 40.0 | 14400 | > th | dose dependent | sin | 14 | NA |
| 285 | 761.08 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 300 | 761.33 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 10 | 22 |
| 307 | 761.61 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 316 | 761.78 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 11 | 7 |
| 317 | 761.78 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 11 | 7 |
| 339 | 761.92 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 12 | 20 |
| 371 | 762.10 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 12 | 11 |
| 377 | 762.13 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 12 | 8 |
| 428 | 762.65 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 15 |
| 429 | 762.65 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 15 |
| 437 | 762.76 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 14 |
| 454 | 762.84 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 12 | 11 |
| 460 | 762.89 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 12 | 8 |
| 468 | 762.91 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 12 | 6 |
| 474 | 762.96 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 12 | 19 |
| 481 | 763.01 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 6 | 11 |
| 530 | 763.32 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 19 | 22 |
| 533 | 763.33 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 21 | 20 |
| 627 | 763.68 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 10 | 7 |
| 635 | 763.77 | radiation | 10.0 | 14400 | < th | dose dependent | sin | 1 | NA |
| 636 | 763.78 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 12 | 11 |
| 640 | 763.80 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 12 | 8 |
| 671 | 763.92 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 10 | 7 |
| 698 | 764.09 | radiation | 10.0 | 14400 | > th | dose independent | sin | 21 | NA |
| 742 | 764.30 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 745 | 764.40 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 10 | 13 |
| 746 | 764.40 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 749 | 764.40 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 13 |
| 751 | 764.41 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 13 |
| 755 | 764.42 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 10 | 10 |
| 803 | 764.56 | radiation | 10.0 | 14400 | > th | dose dependent | sin | 16 | NA |
| 829 | 764.73 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 10 | 22 |
| 833 | 764.74 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 865 | 764.80 | radiation | 10.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 893 | 764.96 | radiation | 10.0 | 14400 | > th | dose independent | no | NA | NA |