BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0720500 Os01g0720500|AK062725
(265 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0720500 Similar to Type I chlorophyll a/b-binding prot... 473 e-134
Os09g0346500 Similar to Chlorophyll a-b binding protein, ch... 464 e-131
Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast... 457 e-129
Os03g0592500 Similar to Photosystem II type II chlorophyll ... 394 e-110
AK058312 345 3e-95
Os07g0562700 Similar to Type III chlorophyll a/b-binding pr... 335 2e-92
Os09g0296800 Chlorophyll A-B binding protein family protein 204 6e-53
Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment) 196 2e-50
Os06g0320500 Similar to Light-harvesting complex I (Fragment) 137 9e-33
AK060800 137 9e-33
Os07g0577600 Similar to Type II chlorophyll a/b binding pro... 130 1e-30
Os02g0764500 Similar to Lhca5 protein 127 1e-29
Os09g0439500 Similar to Type II chlorophyll a/b binding pro... 117 1e-26
Os07g0558400 Similar to Chlorophyll a/b-binding protein CP2... 110 9e-25
Os02g0197600 Similar to PSI type III chlorophyll a/b-bindin... 86 3e-17
Os04g0457000 Similar to Chlorophyll a/b-binding protein CP2... 81 7e-16
D85512 78 6e-15
>Os01g0720500 Similar to Type I chlorophyll a/b-binding protein b (Fragment)
Length = 265
Score = 473 bits (1217), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/265 (89%), Positives = 237/265 (89%)
Query: 1 MAASTMALSSPXXXXXXXXXXXXXFGEGRVTMRXXXXXXXXXXXXXXXWYGADRVLYLGP 60
MAASTMALSSP FGEGRVTMR WYGADRVLYLGP
Sbjct: 1 MAASTMALSSPAALAGKAVANAKVFGEGRVTMRKSAAKPKPAAASGSPWYGADRVLYLGP 60
Query: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVAGGP 180
NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVAGGP 180
Query: 181 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 241 NLADHLADPVNNNAWAYATNFVPGK 265
NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265
>Os09g0346500 Similar to Chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP)
Length = 265
Score = 464 bits (1195), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/265 (86%), Positives = 233/265 (87%)
Query: 1 MAASTMALSSPXXXXXXXXXXXXXFGEGRVTMRXXXXXXXXXXXXXXXWYGADRVLYLGP 60
MAA+TMALSSP FGE R+TMR WYGADRVLYLGP
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGP 60
Query: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLAR
Sbjct: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 120
Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVAGGP 180
NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIW QVVLMGAVEGYR+AGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 180
Query: 181 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
LGEVVDPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 241 NLADHLADPVNNNAWAYATNFVPGK 265
NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265
>Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast precursor (LHCII
type I CAB-2) (LHCP)
Length = 261
Score = 457 bits (1175), Expect = e-129, Method: Compositional matrix adjust.
Identities = 231/265 (87%), Positives = 234/265 (88%), Gaps = 4/265 (1%)
Query: 1 MAASTMALSSPXXXXXXXXXXXXXFGEGRVTMRXXXXXXXXXXXXXXXWYGADRVLYLGP 60
MAA+TMALSSP FGEGR+TMR WYGADRVLYLGP
Sbjct: 1 MAAATMALSSPALAGKAAAKV---FGEGRITMRKSAAKPKPAASGSP-WYGADRVLYLGP 56
Query: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLAR
Sbjct: 57 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 116
Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVAGGP 180
NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIW QVVLMGAVEGYR+AGGP
Sbjct: 117 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 176
Query: 181 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 177 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 236
Query: 241 NLADHLADPVNNNAWAYATNFVPGK 265
NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 237 NLADHLADPVNNNAWAYATNFVPGK 261
>Os03g0592500 Similar to Photosystem II type II chlorophyll a/b binding protein
(Fragment)
Length = 263
Score = 394 bits (1011), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/238 (80%), Positives = 207/238 (86%), Gaps = 5/238 (2%)
Query: 28 GRVTMRXXXXXXXXXXXXXXXWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSAD 87
GR+TMR WYG DR YLGP S + PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 31 GRITMRRTVKSAPQSI-----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSAD 85
Query: 88 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLG 147
PETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLG
Sbjct: 86 PETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLG 145
Query: 148 NPSLIHAQSILAIWGCQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 207
NP+L+HAQSILAIW QVVLMG VEGYRV GGPLGE +D +YPGG+FDPLGLADDP+ FA
Sbjct: 146 NPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFA 205
Query: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 206 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263
>AK058312
Length = 266
Score = 345 bits (884), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 176/220 (80%), Positives = 189/220 (85%), Gaps = 4/220 (1%)
Query: 49 WYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 108
WYG DRV YLGP S + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 48 WYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 107
Query: 109 ALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVL 167
ALGC+ PE+L + V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+ G QVVL
Sbjct: 108 ALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVL 167
Query: 168 MGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 225
MG VEGYR+ G P +G+ D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 168 MGLVEGYRINGLPGVGDGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 226
Query: 226 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
GFFVQAIVTGKGPLENL DHLADPVNNNAWAYATNFVPGK
Sbjct: 227 GFFVQAIVTGKGPLENLLDHLADPVNNNAWAYATNFVPGK 266
>Os07g0562700 Similar to Type III chlorophyll a/b-binding protein (Fragment)
Length = 266
Score = 335 bits (859), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 171/220 (77%), Positives = 184/220 (83%), Gaps = 4/220 (1%)
Query: 49 WYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 108
WYG DRV YLGP S + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 48 WYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 107
Query: 109 ALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVL 167
ALGC+ PE+L + V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+ G QVVL
Sbjct: 108 ALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVL 167
Query: 168 MGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 225
MG VEGYR+ G P +G+ D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 168 MGLVEGYRINGLPGVGDGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 226
Query: 226 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
GFFVQAIVTGKGPLENL DHLADPV NNAW YAT F PG
Sbjct: 227 GFFVQAIVTGKGPLENLLDHLADPVANNAWVYATKFTPGS 266
>Os09g0296800 Chlorophyll A-B binding protein family protein
Length = 321
Score = 204 bits (518), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 115/215 (53%), Positives = 141/215 (65%), Gaps = 10/215 (4%)
Query: 49 WYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 108
WYG +R +LGP+ E P++LTGE+PGDYG+D AGL DP FA E++HCRWAML
Sbjct: 101 WYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLA 160
Query: 109 ALGCVFPELLARNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWGCQV 165
ALG V PELL G V F E VW+K G LDYLG P A Q ++ I CQ
Sbjct: 161 ALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQA 220
Query: 166 VLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGR 218
+LM E R G PLG + D YPGG+ FDPLGL+ DP AF +LKVKEIKNGR
Sbjct: 221 LLMVGPEYARYCGIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGR 280
Query: 219 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
LAM + GF++QA VTGKGP++NL +HL+DP++NN
Sbjct: 281 LAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNN 315
>Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment)
Length = 283
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/209 (53%), Positives = 138/209 (66%), Gaps = 9/209 (4%)
Query: 49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
WYG DR ++L G L E P YL GE PGDYG+D GLS PE F+K + E+IH RWA
Sbjct: 65 WYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWA 124
Query: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQ 164
MLGA G + PE + G G EAVWFK G+ + L+Y GN I+ ++ +
Sbjct: 125 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LIVAVAAE 181
Query: 165 VVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
VVL+G E YR+ G ++ D L+PGG FDPLGLA DP+ A LKVKEIKNGRLAMFSM
Sbjct: 182 VVLVGGAEYYRIINGL--DLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSM 239
Query: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
GFF+QA VTG+GP+ENL+ HL+DP NN
Sbjct: 240 LGFFIQAYVTGEGPVENLSKHLSDPFGNN 268
>Os06g0320500 Similar to Light-harvesting complex I (Fragment)
Length = 241
Score = 137 bits (344), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 110/199 (55%), Gaps = 21/199 (10%)
Query: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
+ G+P P++L G PGD+G+D GL+ PE F + +E EV HCRWAML G + PE L
Sbjct: 46 MPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEAL- 104
Query: 120 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVAG 178
G W +A GG YLGNP + ++ I + V + E R
Sbjct: 105 ------GLGNWVQAQEWAAEPGGQATYLGNP--VPWGTLPTILVIEFVAIAFAEHQRTME 156
Query: 179 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 234
DP YPGG+FDPLG + DP F E K+KEIKNGRLAM + GF V Q+
Sbjct: 157 K------DPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 210
Query: 235 GKGPLENLADHLADPVNNN 253
G GPLENLA HL+DP +NN
Sbjct: 211 GTGPLENLASHLSDPWHNN 229
>AK060800
Length = 241
Score = 137 bits (344), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 110/199 (55%), Gaps = 21/199 (10%)
Query: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
+ G+P P++L G PGD+G+D GL+ PE F + +E EV HCRWAML G + PE L
Sbjct: 46 MPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEAL- 104
Query: 120 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVAG 178
G W +A GG YLGNP + ++ I + V + E R
Sbjct: 105 ------GLGNWVQAQEWAAEPGGQATYLGNP--VPWGTLPTILVIEFVAIAFAEHQRTME 156
Query: 179 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 234
DP YPGG+FDPLG + DP F E K+KEIKNGRLAM + GF V Q+
Sbjct: 157 K------DPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 210
Query: 235 GKGPLENLADHLADPVNNN 253
G GPLENLA HL+DP +NN
Sbjct: 211 GTGPLENLASHLSDPWHNN 229
>Os07g0577600 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 263
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 106/201 (52%), Gaps = 32/201 (15%)
Query: 65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 124
PP +L G PGD+G+D GL +DPE+ N + E++HCRWAMLGA G PE L + G+
Sbjct: 67 PPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI- 125
Query: 125 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVAG--GPLG 182
W+ AG Q + ++ I +++L+G EG R A P
Sbjct: 126 LNTPSWYTAGEQQY------------FTDTTTLFII---ELILIGWAEGRRWADIIKPGC 170
Query: 183 EVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFF 228
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G +
Sbjct: 171 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAW 230
Query: 229 VQAIVTGKGPLENLADHLADP 249
QA TG GP++NL HLADP
Sbjct: 231 FQAEYTGTGPIDNLFAHLADP 251
>Os02g0764500 Similar to Lhca5 protein
Length = 261
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 110/207 (53%), Gaps = 32/207 (15%)
Query: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
+PP +L G PGD+G+D GL +P + E++HCR+AM G G + +L+ +G+
Sbjct: 62 DPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGI 121
Query: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYR----VAGG 179
VWF+AG+ F D+ + A++ Q++LMG E R + G
Sbjct: 122 N-NLPVWFEAGATKF-----DF---------ANTTALFFVQLLLMGFAETKRYMDFINPG 166
Query: 180 PLGEV------------VDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226
E P YPGG F+PLGLA D E E K+KEIKNGRLAM +M G
Sbjct: 167 SQAEEGTFLGIEAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLG 226
Query: 227 FFVQAIVTGKGPLENLADHLADPVNNN 253
F VQA VT GP++NL HL+DP N N
Sbjct: 227 FIVQASVTHVGPIDNLLTHLSDPFNKN 253
>Os09g0439500 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 264
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 112/226 (49%), Gaps = 34/226 (15%)
Query: 51 GADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGAL 110
G DR L+ PP +L G PGD+G+D GL +DPE + E++H RWAML
Sbjct: 56 GPDRPLWFP--GSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVA 113
Query: 111 GCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGA 170
G + PE+L + G + W AG++ DY +P + Q+ LMG
Sbjct: 114 GILVPEVLEKWGF-MEDYSWIDAGAR-------DYFADPWTLFVS--------QMALMGW 157
Query: 171 VEGYRVAG--GPLGEVVDPL------------YPGGSFDPLGL--ADDPEAFAELKVKEI 214
EG R A P V+P YPGG + G PE L+ KEI
Sbjct: 158 AEGRRWADYLNPGCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEI 217
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATN 260
KNGRLAM + GF+ QA+ TG+GP++NL HLADP + N ++ T+
Sbjct: 218 KNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTS 263
>Os07g0558400 Similar to Chlorophyll a/b-binding protein CP29 precursor
Length = 290
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 108/235 (45%), Gaps = 64/235 (27%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN-------------------- 94
P YL G GDYG+D GL E AKN
Sbjct: 64 PDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGEIIGTRFETGEVKSTPF 123
Query: 95 ------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG 142
RE E+IH RWAML LG + E L GV W AG +G
Sbjct: 124 QPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV-----TWQDAGKVELVDGS 176
Query: 143 LDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGS-FDPLG 198
YLG P ++ IW +V+++G +E R A +DP LYPGGS FDPLG
Sbjct: 177 -SYLGQPLPFSISTL--IW-IEVLVIGYIEFQRNAE------LDPEKRLYPGGSYFDPLG 226
Query: 199 LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
LA DPE L++ EIK+ RLAM + GF VQA TGKGPL N A HL+DP++
Sbjct: 227 LASDPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTT 281
>Os02g0197600 Similar to PSI type III chlorophyll a/b-binding protein
Length = 180
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 186 DPLYPGGS-FDPLGLADDPEA-FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
+P YPGG F+PLG EA ELK+KEIKNGRLAM + GF VQA+ TG GP++NL
Sbjct: 103 EPAYPGGPLFNPLGFGTKSEAEMKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLL 162
Query: 244 DHLADPVNNN 253
DHLADPV+NN
Sbjct: 163 DHLADPVHNN 172
>Os04g0457000 Similar to Chlorophyll a/b-binding protein CP24, photosystem II
(Fragment)
Length = 252
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
P +L G PGD+G+D GL DP RE E+IH RWAM LG + A +GV
Sbjct: 64 PPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ--AWSGVP- 120
Query: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVA-------- 177
WF+AG+Q P I S ++ G Q++LMG VE R
Sbjct: 121 ----WFEAGAQ------------PEAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQ 164
Query: 178 ----GGPLGEVVDPL--------YPGGS-FDPLGLA---------DDPEAFAELKVKEIK 215
P + YPGG FDPLGL D + LK+ EIK
Sbjct: 165 AVEWATPWSRTAENFSNATGEQGYPGGKFFDPLGLGGETRDGVYIPDTDKLDRLKLAEIK 224
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
+ RLAM +M F+ +A GK PL L
Sbjct: 225 HARLAMLAMLIFYFEA-GQGKTPLGAL 250
>D85512
Length = 124
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 41/47 (87%)
Query: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
A LK+KEIKNGRLAMFSM GFF+QA VTG+GP+ENL+ HL+DP NN
Sbjct: 63 ALLKLKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNN 109
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.140 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,117,213
Number of extensions: 390271
Number of successful extensions: 805
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 758
Number of HSP's successfully gapped: 17
Length of query: 265
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 166
Effective length of database: 11,866,615
Effective search space: 1969858090
Effective search space used: 1969858090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)