FiT-DB / Search/ Help/ Sample detail

Os07g0562700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Type III chlorophyll a/b-binding protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.6 (0.0384) R2 : 0.911
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.56 (0.149) R2dC : 0.0568 R2C : 0.331
β3 : -5.84 (0.177) R2dE : 0.557 R2E : 0.843
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.573 (0.0812) R2dN8 : 0.0127 R2N8 : 0.02
σ : 0.721
deviance : 239.45
__
_____
C
peak time of C : 10.6
E
wheather : temperature
threshold : 12.89
memory length : 216
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.6
open length of G : 8.08

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
237.14 0.724 14.6 -0.301 1.15 -6.04 1.33 3.48 -0.645 11.2 10.1 240 18.2 8.2
240.39 0.722 14.6 -0.16 1.18 -6.02 -0.254 -- -0.718 9.65 10.07 230 18.4 8.25
229.47 0.706 14.6 -0.224 1.46 -5.96 -- 1.93 -0.608 10.6 12.56 221 18.6 8.02
236.54 0.716 14.6 -0.357 1.52 -5.85 -- -- -0.615 10.6 12.49 219 18.6 8.07
259.43 0.75 14.6 -0.362 -- -7.05 -- 1.53 -0.612 -- 9.327 198 18.4 8.47
624.14 1.17 14.6 -0.677 5.61 -- 0.106 -- -0.896 11.9 -- -- -- --
624.19 1.17 14.6 -0.673 5.61 -- -- -- -0.895 11.9 -- -- -- --
264.18 0.757 14.6 -0.387 -- -7.14 -- -- -0.615 -- 9.114 202 18.3 8.47
239.45 0.721 14.6 -- 1.56 -5.84 -- -- -0.573 10.6 12.89 216 18.6 8.08
2604.61 2.38 14.7 -0.841 -- -- -- -- -0.969 -- -- -- -- --
636.11 1.18 14.5 -- 5.62 -- -- -- -0.82 11.9 -- -- -- --
266.44 0.76 14.6 -- -- -7.17 -- -- -0.561 -- 9.352 207 18.2 8.58
2623.27 2.39 14.7 -- -- -- -- -- -0.876 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 244.13 temperature 10.0 270 > th dose dependent rect. 18 8
15 296.96 temperature 20.0 90 > th dose independent rect. 20 7
21 304.40 temperature 15.0 10 > th dose dependent rect. 20 8
69 345.96 temperature 20.0 90 > th dose independent rect. 9 18
119 375.33 atmosphere 1010.0 270 < th dose independent rect. 18 8
143 384.19 radiation 10.0 270 < th dose independent rect. 17 9
144 385.38 precipitation 0.1 270 < th dose independent rect. 2 15
145 385.38 precipitation 0.1 270 < th dose dependent rect. 2 15
149 386.63 radiation 20.0 270 < th dose dependent rect. 17 9
154 387.24 atmosphere 1015.0 270 < th dose independent rect. 7 18
155 387.28 humidity 50.0 270 > th dose independent rect. 17 9
163 390.14 wind 9.0 270 < th dose independent rect. 17 9
174 390.69 temperature 10.0 270 > th dose independent rect. 2 15
175 390.69 atmosphere 1015.0 270 < th dose independent rect. 2 15
203 393.94 wind 9.0 270 < th dose independent rect. 2 15
213 395.96 temperature 10.0 270 > th dose dependent rect. 3 3
221 397.39 atmosphere 1015.0 90 < th dose independent rect. 9 18
232 398.31 atmosphere 995.0 270 > th dose independent rect. 17 9
234 398.67 temperature 10.0 270 > th dose dependent rect. 2 5
239 398.97 precipitation 0.1 270 < th dose independent rect. 17 9
240 398.97 precipitation 0.1 270 < th dose dependent rect. 17 9
246 400.37 radiation 10.0 270 < th dose independent rect. 2 5
247 400.39 radiation 10.0 270 < th dose independent rect. 3 3
250 400.54 precipitation 0.1 270 < th dose independent rect. 2 5
251 400.54 precipitation 0.1 270 < th dose dependent rect. 2 5
258 401.79 radiation 40.0 270 < th dose dependent rect. 2 5
260 401.96 humidity 70.0 270 > th dose independent rect. 2 5
264 402.43 wind 7.0 270 < th dose independent rect. 2 5
266 402.57 humidity 50.0 270 > th dose dependent rect. 2 5
268 403.05 atmosphere 995.0 270 > th dose independent rect. 2 15
270 403.12 temperature 10.0 270 > th dose independent rect. 2 5
272 403.12 temperature 30.0 270 < th dose independent rect. 2 5
273 403.12 humidity 50.0 270 > th dose independent rect. 2 5
275 403.12 atmosphere 995.0 270 > th dose independent rect. 2 5
276 403.12 atmosphere 1015.0 270 < th dose independent rect. 2 5
281 403.36 precipitation 0.1 270 < th dose independent rect. 3 3
282 403.36 precipitation 0.1 270 < th dose dependent rect. 3 3
292 404.16 radiation 10.0 270 < th dose dependent rect. 3 3
301 404.93 wind 9.0 270 < th dose independent rect. 7 19
319 405.55 temperature 30.0 270 < th dose independent rect. 17 9
322 405.72 wind 7.0 270 < th dose independent rect. 3 3
341 406.57 temperature 10.0 270 > th dose independent rect. 3 3
343 406.57 temperature 30.0 270 < th dose independent rect. 3 3
344 406.57 humidity 50.0 270 > th dose independent rect. 3 3
347 406.57 atmosphere 995.0 270 > th dose independent rect. 3 3
348 406.57 atmosphere 1015.0 270 < th dose independent rect. 3 3
353 406.62 precipitation 0.1 270 < th dose independent rect. 13 18
354 406.62 precipitation 0.1 270 < th dose dependent rect. 13 18
356 406.65 humidity 50.0 270 > th dose dependent rect. 3 3
358 406.67 wind 9.0 90 < th dose dependent rect. 3 6
412 409.83 wind 9.0 270 < th dose independent rect. 6 21
417 410.02 wind 9.0 270 < th dose dependent rect. 3 3
428 410.69 precipitation 0.1 270 < th dose independent rect. 14 16
429 410.69 precipitation 0.1 270 < th dose dependent rect. 14 16
449 411.13 temperature 10.0 270 > th dose independent rect. 7 6
450 411.13 atmosphere 995.0 270 > th dose independent rect. 7 6
451 411.13 atmosphere 1015.0 270 < th dose independent rect. 7 6
452 411.13 temperature 10.0 270 > th dose independent rect. 13 18
455 411.25 precipitation 0.1 270 < th dose independent rect. 7 6
456 411.25 precipitation 0.1 270 < th dose dependent rect. 7 6
479 412.00 wind 9.0 270 < th dose independent rect. 7 6
483 412.23 wind 9.0 270 < th dose independent rect. 13 18
485 412.53 precipitation 0.1 270 < th dose independent rect. 7 19
486 412.53 precipitation 0.1 270 < th dose dependent rect. 7 19
493 412.85 humidity 50.0 270 > th dose independent rect. 7 19
530 415.13 wind 9.0 90 < th dose independent rect. 9 18
535 415.68 temperature 10.0 270 > th dose independent rect. 6 8
536 415.68 atmosphere 995.0 270 > th dose independent rect. 6 8
537 415.68 atmosphere 1015.0 270 < th dose independent rect. 6 8
538 415.68 temperature 10.0 270 > th dose independent rect. 14 16
549 415.89 precipitation 0.1 270 < th dose independent rect. 6 8
550 415.89 precipitation 0.1 270 < th dose dependent rect. 6 8
575 416.69 humidity 50.0 270 > th dose independent rect. 7 6
579 416.97 wind 9.0 270 < th dose independent rect. 14 16
590 417.66 atmosphere 995.0 90 > th dose independent rect. 9 18
607 418.71 precipitation 0.1 270 < th dose independent rect. 6 21
608 418.71 precipitation 0.1 270 < th dose dependent rect. 6 21
614 418.96 atmosphere 995.0 270 > th dose independent rect. 7 19
635 419.96 radiation 1.0 270 > th dose independent rect. 7 6
650 421.04 temperature 10.0 270 > th dose dependent rect. 19 17
666 421.59 precipitation 0.1 90 < th dose independent rect. 9 18
667 421.59 precipitation 0.1 90 < th dose dependent rect. 9 18
671 421.76 atmosphere 995.0 270 > th dose independent rect. 13 18
678 422.17 wind 1.0 270 > th dose independent rect. 7 6
706 423.88 radiation 1.0 90 < th dose dependent sin 13 NA
720 424.50 wind 9.0 90 < th dose dependent rect. 19 8
763 426.04 wind 1.0 270 > th dose independent rect. 17 9
764 426.12 wind 1.0 270 > th dose independent rect. 7 18
766 426.14 radiation 10.0 270 < th dose dependent rect. 10 16
773 426.44 temperature 10.0 10 > th dose dependent rect. 9 18
844 428.26 temperature 10.0 90 > th dose dependent rect. 9 18
883 429.23 radiation 1.0 270 < th dose independent rect. 9 17
912 430.41 radiation 40.0 270 < th dose independent rect. 14 16
914 430.52 temperature 10.0 10 > th dose dependent rect. 3 6
932 431.09 radiation 1.0 270 < th dose dependent rect. 6 20
936 431.21 atmosphere 995.0 270 > th dose dependent rect. 3 3
939 431.28 wind 1.0 270 > th dose independent rect. 1 6
957 431.70 atmosphere 1015.0 270 < th dose independent rect. 19 17
961 431.81 atmosphere 1015.0 270 < th dose independent rect. 21 15
968 431.94 radiation 1.0 10 < th dose dependent sin 12 NA
971 432.01 precipitation 0.1 10 < th dose independent rect. 9 18
972 432.01 precipitation 0.1 10 < th dose dependent rect. 9 18