BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0562700 Os07g0562700|AK109399
(266 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0562700 Similar to Type III chlorophyll a/b-binding pr... 542 e-154
AK058312 533 e-152
Os03g0592500 Similar to Photosystem II type II chlorophyll ... 362 e-100
Os09g0346500 Similar to Chlorophyll a-b binding protein, ch... 341 4e-94
Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast... 340 6e-94
Os01g0720500 Similar to Type I chlorophyll a/b-binding prot... 336 9e-93
Os09g0296800 Chlorophyll A-B binding protein family protein 203 1e-52
Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment) 186 2e-47
Os06g0320500 Similar to Light-harvesting complex I (Fragment) 132 3e-31
AK060800 132 3e-31
Os07g0577600 Similar to Type II chlorophyll a/b binding pro... 125 3e-29
Os09g0439500 Similar to Type II chlorophyll a/b binding pro... 123 1e-28
Os02g0764500 Similar to Lhca5 protein 118 4e-27
Os07g0558400 Similar to Chlorophyll a/b-binding protein CP2... 110 1e-24
Os08g0435900 Similar to LHC I type IV chlorophyll binding p... 108 3e-24
Os04g0457000 Similar to Chlorophyll a/b-binding protein CP2... 89 2e-18
Os02g0197600 Similar to PSI type III chlorophyll a/b-bindin... 88 6e-18
D85512 77 1e-14
>Os07g0562700 Similar to Type III chlorophyll a/b-binding protein (Fragment)
Length = 266
Score = 542 bits (1396), Expect = e-154, Method: Compositional matrix adjust.
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MASTIMAPTSRVLAAKTPFLGHPRPSNAPVRDIAAAATGRITMSKELWYGPDRVKYLGPF 60
MASTIMAPTSRVLAAKTPFLGHPRPSNAPVRDIAAAATGRITMSKELWYGPDRVKYLGPF
Sbjct: 1 MASTIMAPTSRVLAAKTPFLGHPRPSNAPVRDIAAAATGRITMSKELWYGPDRVKYLGPF 60
Query: 61 SAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 120
SAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW
Sbjct: 61 SAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 120
Query: 121 VRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLP 180
VRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLP
Sbjct: 121 VRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLP 180
Query: 181 GVGDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
GVGDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 GVGDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
Query: 241 ENLLDHLADPVANNAWVYATKFTPGS 266
ENLLDHLADPVANNAWVYATKFTPGS
Sbjct: 241 ENLLDHLADPVANNAWVYATKFTPGS 266
>AK058312
Length = 266
Score = 533 bits (1372), Expect = e-152, Method: Compositional matrix adjust.
Identities = 261/266 (98%), Positives = 261/266 (98%)
Query: 1 MASTIMAPTSRVLAAKTPFLGHPRPSNAPVRDIAAAATGRITMSKELWYGPDRVKYLGPF 60
MASTIMAPTSRVLAAKTPFLGHPRPSNAPVRDIAAAATGRITMSKELWYGPDRVKYLGPF
Sbjct: 1 MASTIMAPTSRVLAAKTPFLGHPRPSNAPVRDIAAAATGRITMSKELWYGPDRVKYLGPF 60
Query: 61 SAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 120
SAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW
Sbjct: 61 SAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 120
Query: 121 VRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLP 180
VRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLP
Sbjct: 121 VRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLP 180
Query: 181 GVGDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
GVGDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 GVGDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
Query: 241 ENLLDHLADPVANNAWVYATKFTPGS 266
ENLLDHLADPV NNAW YAT F PG
Sbjct: 241 ENLLDHLADPVNNNAWAYATNFVPGK 266
>Os03g0592500 Similar to Photosystem II type II chlorophyll a/b binding protein
(Fragment)
Length = 263
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/265 (71%), Positives = 207/265 (78%), Gaps = 12/265 (4%)
Query: 10 SRVLAAKTPFLGHPRPSNAPVRDIAAAATGRITMSK-------ELWYGPDRVKYLGPFSA 62
+ L T FLG + VR + + GRITM + +WYGPDR KYLGPFS
Sbjct: 3 ASALHQTTSFLGTAPRRDELVRRVGDSG-GRITMRRTVKSAPQSIWYGPDRPKYLGPFSE 61
Query: 63 QTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVR 122
QTPSYL GEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-NG 120
Query: 123 VDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLPGV 182
V F E VWFKAGAQIFS+GGLDYLGNPNLVHAQSILA+ QVVLMG VEGYR+ G P +
Sbjct: 121 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP-L 179
Query: 183 GDGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 241
G+G D +YPGG FDPLGLADDP TFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 180 GEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 238
Query: 242 NLLDHLADPVANNAWVYATKFTPGS 266
NL DH+ADPVANNAW YAT F PG
Sbjct: 239 NLFDHVADPVANNAWAYATNFVPGK 263
>Os09g0346500 Similar to Chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP)
Length = 265
Score = 341 bits (874), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 183/267 (68%), Positives = 200/267 (74%), Gaps = 5/267 (1%)
Query: 1 MASTIMAPTSRVLAAKTPFLGHPRPSNAPVRDIAAAATGRITMSK-ELWYGPDRVKYLGP 59
MA+ MA +S V+A P A + AA + S WYG DRV YLGP
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGP 60
Query: 60 FSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 119
S + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 120
Query: 120 WVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGL 179
V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+ QVVLMG VEGYRI G
Sbjct: 121 -NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGG 179
Query: 180 PGVGDGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
P +G+ D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 P-LGEVVDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 239 PLENLLDHLADPVANNAWVYATKFTPG 265
PLENL DHLADPV NNAW YAT F PG
Sbjct: 238 PLENLADHLADPVNNNAWAYATNFVPG 264
>Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast precursor (LHCII
type I CAB-2) (LHCP)
Length = 261
Score = 340 bits (872), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 184/268 (68%), Positives = 201/268 (75%), Gaps = 11/268 (4%)
Query: 1 MASTIMAPTSRVLAAKT--PFLGHPRPSNAPVRDIAAAATGRITMSKELWYGPDRVKYLG 58
MA+ MA +S LA K G R + +AA + S WYG DRV YLG
Sbjct: 1 MAAATMALSSPALAGKAAAKVFGEGR-----ITMRKSAAKPKPAASGSPWYGADRVLYLG 55
Query: 59 PFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 118
P S + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 56 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 115
Query: 119 KWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRING 178
+ V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+ QVVLMG VEGYRI G
Sbjct: 116 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 174
Query: 179 LPGVGDGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 237
P +G+ D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 175 GP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 232
Query: 238 GPLENLLDHLADPVANNAWVYATKFTPG 265
GPLENL DHLADPV NNAW YAT F PG
Sbjct: 233 GPLENLADHLADPVNNNAWAYATNFVPG 260
>Os01g0720500 Similar to Type I chlorophyll a/b-binding protein b (Fragment)
Length = 265
Score = 336 bits (862), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 182/267 (68%), Positives = 199/267 (74%), Gaps = 17/267 (6%)
Query: 13 LAAKTPFLGHPRP-SNAPVRDIAAAATGRITMSKEL------------WYGPDRVKYLGP 59
+AA T L P + V + GR+TM K WYG DRV YLGP
Sbjct: 1 MAASTMALSSPAALAGKAVANAKVFGEGRVTMRKSAAKPKPAAASGSPWYGADRVLYLGP 60
Query: 60 FSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 119
S + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 120 WVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGL 179
V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+ G QVVLMG VEGYR+ G
Sbjct: 121 -NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVAGG 179
Query: 180 PGVGDGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
P +G+ D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 P-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 239 PLENLLDHLADPVANNAWVYATKFTPG 265
PLENL DHLADPV NNAW YAT F PG
Sbjct: 238 PLENLADHLADPVNNNAWAYATNFVPG 264
>Os09g0296800 Chlorophyll A-B binding protein family protein
Length = 321
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/228 (47%), Positives = 143/228 (62%), Gaps = 12/228 (5%)
Query: 37 ATGRITMSKELWYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRAL 96
+ R + WYG +R ++LGP + P++L GE+PGDYG+D AGL DP AFA
Sbjct: 90 SAARQARTASSWYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNF 149
Query: 97 EVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNP--NLVHA 154
E++H RWAML ALG + PE+L+ + V F EPVW+K G LDYLG P +
Sbjct: 150 EILHCRWAMLAALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGG 209
Query: 155 QSILAVLGFQVVLMGLVEGYRINGLPGV--------GDGNDLYPGGQYFDPLGLADDPVT 206
Q ++ + Q +LM E R G+ + GD N YPGG FDPLGL+ DPV
Sbjct: 210 QGVIVIAICQALLMVGPEYARYCGIEALEPLGLYLPGDIN--YPGGALFDPLGLSKDPVA 267
Query: 207 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLADPVANN 254
F +LKVKEIKNGRLAM + GF++QA VTGKGP++NL++HL+DP+ NN
Sbjct: 268 FEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNN 315
>Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment)
Length = 283
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 135/210 (64%), Gaps = 9/210 (4%)
Query: 48 WYGPDRVKYLGP---FSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 104
WYGPDR +L ++ P YL GE PGDYG+D GLS PE F++ +A E+IH RWA
Sbjct: 65 WYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWA 124
Query: 105 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQ 164
MLGA G I PE K+ E VWFK GA + L+Y GN ++ ++ + +
Sbjct: 125 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LIVAVAAE 181
Query: 165 VVLMGLVEGYRINGLPGVGDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 224
VVL+G E YRI + G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMFS
Sbjct: 182 VVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFS 238
Query: 225 MFGFFVQAIVTGKGPLENLLDHLADPVANN 254
M GFF+QA VTG+GP+ENL HL+DP NN
Sbjct: 239 MLGFFIQAYVTGEGPVENLSKHLSDPFGNN 268
>Os06g0320500 Similar to Light-harvesting complex I (Fragment)
Length = 241
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 112/225 (49%), Gaps = 33/225 (14%)
Query: 35 AAATGRITMSKELWYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNR 94
A +GR+TMS E G R P++L G PGD+G+D GL+ PE F R +
Sbjct: 33 ATTSGRVTMSAEWMPGQPR-----------PAHLDGSSPGDFGFDPLGLATVPENFERFK 81
Query: 95 ALEVIHGRWAMLGALGCITPEV--LEKWVRVD--FKEPVWFKAGAQIFSDGGLDYLGNPN 150
EV H RWAML G + PE L WV+ EP G YLGNP
Sbjct: 82 ESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEP-----------GGQATYLGNP- 129
Query: 151 LVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGDGNDLYPGGQYFDPLGLADDPVTFAEL 210
V ++ +L + V + E R YPGG FDPLG + DPV F E
Sbjct: 130 -VPWGTLPTILVIEFVAIAFAEHQRTM---EKDPEKKKYPGGA-FDPLGFSKDPVKFEEY 184
Query: 211 KVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLADPVANN 254
K+KEIKNGRLAM + GF V Q+ G GPLENL HL+DP NN
Sbjct: 185 KLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNN 229
>AK060800
Length = 241
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 112/225 (49%), Gaps = 33/225 (14%)
Query: 35 AAATGRITMSKELWYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNR 94
A +GR+TMS E G R P++L G PGD+G+D GL+ PE F R +
Sbjct: 33 ATTSGRVTMSAEWMPGQPR-----------PAHLDGSSPGDFGFDPLGLATVPENFERFK 81
Query: 95 ALEVIHGRWAMLGALGCITPEV--LEKWVRVD--FKEPVWFKAGAQIFSDGGLDYLGNPN 150
EV H RWAML G + PE L WV+ EP G YLGNP
Sbjct: 82 ESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEP-----------GGQATYLGNP- 129
Query: 151 LVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGDGNDLYPGGQYFDPLGLADDPVTFAEL 210
V ++ +L + V + E R YPGG FDPLG + DPV F E
Sbjct: 130 -VPWGTLPTILVIEFVAIAFAEHQRTM---EKDPEKKKYPGGA-FDPLGFSKDPVKFEEY 184
Query: 211 KVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLADPVANN 254
K+KEIKNGRLAM + GF V Q+ G GPLENL HL+DP NN
Sbjct: 185 KLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNN 229
>Os07g0577600 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 263
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 113/217 (52%), Gaps = 38/217 (17%)
Query: 51 PDRVKYLGPFSAQTPS-YLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAL 109
PDR + F TP +L G PGD+G+D GL +DPE+ N E++H RWAMLGA
Sbjct: 56 PDRPIW---FPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAA 112
Query: 110 GCITPEVLEKWVRVDFKEPVWFKAG-AQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLM 168
G PE L K + + P W+ AG Q F+D ++ +++L+
Sbjct: 113 GIFIPEFLTK-IGI-LNTPSWYTAGEQQYFTDTTTLFI----------------IELILI 154
Query: 169 GLVEGYRINGL--PGVGD-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVK 213
G EG R + PG + G D+ YPGG +FDPLG P EL+ K
Sbjct: 155 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTK 214
Query: 214 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLADP 250
EIKNGRLAM ++ G + QA TG GP++NL HLADP
Sbjct: 215 EIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 251
>Os09g0439500 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 264
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 110/225 (48%), Gaps = 44/225 (19%)
Query: 50 GPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAL 109
GPDR + + P +L G PGD+G+D GL +DPE E++H RWAML
Sbjct: 56 GPDRPLWFP--GSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVA 113
Query: 110 GCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMG 169
G + PEVLEKW ++ + W AGA+ DY +P + Q+ LMG
Sbjct: 114 GILVPEVLEKWGFME--DYSWIDAGAR-------DYFADPWTLFVS--------QMALMG 156
Query: 170 LVEGYRI-------------------NGLPGVGDGNDLYPGGQYFDPLGLAD-DPVTFAE 209
EG R N +P VG YPGG +FD P
Sbjct: 157 WAEGRRWADYLNPGCVAVEPRLPNRRNPVPDVG-----YPGGLWFDWGNWGRGSPEPVMV 211
Query: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLADPVANN 254
L+ KEIKNGRLAM + GF+ QA+ TG+GP++NLL HLADP N
Sbjct: 212 LRTKEIKNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCN 256
>Os02g0764500 Similar to Lhca5 protein
Length = 261
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 104/206 (50%), Gaps = 32/206 (15%)
Query: 65 PSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 124
P +L G PGD+G+D GL +P E++H R+AM G G + +++ V
Sbjct: 64 PPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIR--VSGI 121
Query: 125 FKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYR----INGLP 180
PVWF+AGA F D+ + A+ Q++LMG E R IN
Sbjct: 122 NNLPVWFEAGATKF-----DF---------ANTTALFFVQLLLMGFAETKRYMDFINPGS 167
Query: 181 GVGDGNDL------------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGF 228
+G L YPGG F+PLGLA D E K+KEIKNGRLAM +M GF
Sbjct: 168 QAEEGTFLGIEAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGF 227
Query: 229 FVQAIVTGKGPLENLLDHLADPVANN 254
VQA VT GP++NLL HL+DP N
Sbjct: 228 IVQASVTHVGPIDNLLTHLSDPFNKN 253
>Os07g0558400 Similar to Chlorophyll a/b-binding protein CP29 precursor
Length = 290
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 86/160 (53%), Gaps = 15/160 (9%)
Query: 92 RNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNL 151
R R E+IHGRWAML LG ++ E L W AG DG YLG P
Sbjct: 134 RFRECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDGS-SYLGQPLP 184
Query: 152 VHAQSILAVLGFQVVLMGLVEGYRINGLPGVGDGNDLYPGGQYFDPLGLADDPVTFAELK 211
SI ++ +V+++G +E R L LYPGG YFDPLGLA DP L+
Sbjct: 185 F---SISTLIWIEVLVIGYIEFQRNAEL---DPEKRLYPGGSYFDPLGLASDPEKKERLQ 238
Query: 212 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLADPV 251
+ EIK+ RLAM + GF VQA TGKGPL N HL+DP+
Sbjct: 239 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 278
>Os08g0435900 Similar to LHC I type IV chlorophyll binding protein (Fragment)
Length = 244
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 100/203 (49%), Gaps = 34/203 (16%)
Query: 64 TPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRV 123
+P+YL G PGD G+D GL+ DPE E+++GRWAMLG G + PEVL K +
Sbjct: 55 SPTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLI 114
Query: 124 DFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGL--PG 181
D P W+ AG + + S L V+ F +L VE R + PG
Sbjct: 115 D--APQWYDAGKATY-------------FASSSTLFVIEF--ILFHYVEIRRWQDIKNPG 157
Query: 182 VGDGNDLYPG-----------GQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV 230
+ + ++ G F+PL +P E K KE+ NGRLAM + GF V
Sbjct: 158 CVNQDPIFKSYSLPPHECGYPGSVFNPLNF--EPTL--EAKEKELANGRLAMLAFLGFLV 213
Query: 231 QAIVTGKGPLENLLDHLADPVAN 253
Q VT KGP +NLL HL+DP N
Sbjct: 214 QHNVTQKGPFDNLLQHLSDPWHN 236
>Os04g0457000 Similar to Chlorophyll a/b-binding protein CP24, photosystem II
(Fragment)
Length = 252
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 106/260 (40%), Gaps = 57/260 (21%)
Query: 16 KTPFLGHPRPSNAPVRDIAAAATGR---ITMSKELWYGPDRVKYLGPFSAQTPSYLRGEF 72
KTPFLG R V A R + +K+ W + P +L G
Sbjct: 16 KTPFLGAKRALANAVGVAGAKPAPRRALVVSAKKSWI----PAFKSDAEFINPPWLDGSL 71
Query: 73 PGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFK 132
PGD+G+D GL DP R E+IHGRWAM LG V + W V WF+
Sbjct: 72 PGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIF---VGQAWSGVP-----WFE 123
Query: 133 AGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGL------------- 179
AGAQ P + S ++LG Q++LMG VE R
Sbjct: 124 AGAQ------------PEAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQAVEWATP 171
Query: 180 -------PGVGDGNDLYPGGQYFDPLGLAD---------DPVTFAELKVKEIKNGRLAMF 223
G YPGG++FDPLGL D LK+ EIK+ RLAM
Sbjct: 172 WSRTAENFSNATGEQGYPGGKFFDPLGLGGETRDGVYIPDTDKLDRLKLAEIKHARLAML 231
Query: 224 SMFGFFVQAIVTGKGPLENL 243
+M F+ +A GK PL L
Sbjct: 232 AMLIFYFEA-GQGKTPLGAL 250
>Os02g0197600 Similar to PSI type III chlorophyll a/b-binding protein
Length = 180
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 182 VGDGNDLYPGGQYFDPLGLA-DDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
G G YPGG F+PLG ELK+KEIKNGRLAM + GF VQA+ TG GP+
Sbjct: 99 AGSGEPAYPGGPLFNPLGFGTKSEAEMKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPV 158
Query: 241 ENLLDHLADPVANN 254
+NLLDHLADPV NN
Sbjct: 159 QNLLDHLADPVHNN 172
>D85512
Length = 124
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 40/47 (85%)
Query: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLADPVANN 254
A LK+KEIKNGRLAMFSM GFF+QA VTG+GP+ENL HL+DP NN
Sbjct: 63 ALLKLKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNN 109
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.140 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,430,606
Number of extensions: 467946
Number of successful extensions: 1051
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 1000
Number of HSP's successfully gapped: 18
Length of query: 266
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 167
Effective length of database: 11,866,615
Effective search space: 1981724705
Effective search space used: 1981724705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)