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Os02g0197600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to PSI type III chlorophyll a/b-binding protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.6 (0.0296) R2 : 0.925
β1 : -1.15 (0.109) R2dD : 0.0199 R2D : 0.0171
β2 : 1.62 (0.103) R2dC : 0.0863 R2C : 0.379
β3 : -4.97 (0.133) R2dE : 0.488 R2E : 0.808
β4 : 2.77 (0.273) R2dD*C : 0.0112 R2D*C : 0.0095
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.441 (0.0639) R2dN8 : 0.0106 R2N8 : 0.0177
σ : 0.552
deviance : 140.51
__
_____
C
peak time of C : 10.7
E
wheather : temperature
threshold : 15.01
memory length : 108
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.7
open length of G : 7.13

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
137.86 0.552 15.6 -1.09 1.71 -4.96 2.98 1.85 -0.411 10.8 15.43 109 19.7 7.05
140.51 0.552 15.6 -1.15 1.62 -4.97 2.77 -- -0.441 10.7 15.01 108 19.7 7.13
163.65 0.596 15.6 -1.01 1.54 -5.22 -- -0.432 -0.502 10.4 14.78 120 19.7 6.93
159.18 0.588 15.6 -1.04 1.58 -5.03 -- -- -0.414 10.9 15.31 111 19.6 7.2
188.91 0.64 15.8 -1.23 -- -5.9 -- -1.56 -0.456 -- 12.17 152 18.8 7.9
527.97 1.08 15.7 -1.39 4.44 -- 2.8 -- -0.819 11.4 -- -- -- --
561.68 1.11 15.7 -1.27 4.43 -- -- -- -0.807 11.5 -- -- -- --
185.01 0.634 15.7 -0.997 -- -6.1 -- -- -0.403 -- 13.17 158 18.8 7.77
185.6 0.635 15.6 -- 1.59 -5.24 -- -- -0.319 10.9 15.99 123 19.5 7.18
1792.11 1.98 15.8 -1.39 -- -- -- -- -0.854 -- -- -- -- --
604.41 1.15 15.6 -- 4.44 -- -- -- -0.666 11.5 -- -- -- --
203.11 0.664 15.7 -- -- -6.46 -- -- -0.38 -- 13.42 173 18.6 7.87
1843.18 2 15.7 -- -- -- -- -- -0.7 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 151.62 temperature 15.0 90 > th dose dependent rect. 20 7
2 153.56 temperature 15.0 270 > th dose dependent rect. 18 7
6 164.48 temperature 15.0 10 > th dose dependent rect. 20 7
11 179.81 temperature 20.0 10 > th dose independent rect. 20 7
19 188.58 temperature 20.0 270 > th dose independent rect. 18 7
101 253.77 temperature 20.0 270 > th dose independent rect. 7 18
122 265.84 temperature 20.0 30 > th dose independent rect. 9 18
148 275.82 atmosphere 1010.0 90 < th dose independent rect. 20 7
168 281.46 atmosphere 1010.0 270 < th dose independent rect. 18 7
190 289.30 temperature 10.0 270 > th dose dependent rect. 19 16
197 292.37 temperature 30.0 90 < th dose independent rect. 19 8
198 292.37 humidity 50.0 90 > th dose independent rect. 19 8
200 292.37 atmosphere 995.0 90 > th dose independent rect. 19 8
201 292.37 radiation 1.0 90 < th dose independent rect. 19 8
206 292.37 temperature 10.0 90 > th dose independent rect. 3 16
207 292.37 atmosphere 1015.0 90 < th dose independent rect. 3 16
208 292.37 radiation 1.0 90 < th dose dependent rect. 19 8
215 292.45 wind 9.0 90 < th dose independent rect. 3 16
216 292.62 wind 9.0 90 < th dose independent rect. 19 8
217 292.69 precipitation 0.1 90 < th dose independent rect. 3 16
218 292.69 precipitation 0.1 90 < th dose dependent rect. 3 16
235 294.99 radiation 10.0 270 < th dose independent rect. 17 9
239 295.51 precipitation 0.1 90 < th dose independent rect. 19 8
240 295.51 precipitation 0.1 90 < th dose dependent rect. 19 8
243 295.56 radiation 20.0 270 < th dose dependent rect. 17 9
251 296.78 temperature 20.0 10 > th dose independent rect. 20 18
330 301.58 wind 1.0 270 > th dose independent rect. 18 7
357 302.05 humidity 50.0 90 > th dose dependent rect. 19 8
359 302.08 precipitation 0.1 10 < th dose independent rect. 20 7
360 302.08 precipitation 0.1 10 < th dose dependent rect. 20 7
367 302.64 temperature 30.0 10 < th dose independent rect. 20 7
368 302.64 humidity 50.0 10 > th dose independent rect. 20 7
371 302.64 atmosphere 995.0 10 > th dose independent rect. 20 7
372 302.64 radiation 1.0 10 < th dose independent rect. 20 7
377 302.64 temperature 10.0 10 > th dose independent rect. 3 17
379 302.64 atmosphere 1015.0 10 < th dose independent rect. 3 17
380 302.64 radiation 1.0 10 < th dose dependent rect. 20 7
385 302.74 wind 9.0 10 < th dose independent rect. 20 7
388 303.33 radiation 40.0 270 < th dose dependent rect. 1 6
415 303.61 temperature 10.0 270 > th dose independent rect. 6 7
416 303.61 atmosphere 995.0 270 > th dose independent rect. 6 7
417 303.61 atmosphere 1015.0 270 < th dose independent rect. 6 7
418 303.61 temperature 10.0 270 > th dose independent rect. 13 17
419 303.63 wind 9.0 10 < th dose independent rect. 3 17
422 303.83 precipitation 0.1 270 < th dose independent rect. 6 7
423 303.83 precipitation 0.1 270 < th dose dependent rect. 6 7
427 304.07 wind 7.0 270 < th dose independent rect. 1 6
436 304.19 wind 9.0 30 < th dose dependent rect. 20 7
438 304.25 precipitation 0.1 270 < th dose independent rect. 1 6
439 304.25 precipitation 0.1 270 < th dose dependent rect. 1 6
441 304.45 precipitation 0.1 270 < th dose independent rect. 13 17
442 304.45 precipitation 0.1 270 < th dose dependent rect. 13 17
443 304.46 radiation 20.0 270 < th dose independent rect. 1 6
447 304.69 humidity 70.0 270 > th dose independent rect. 1 6
450 304.77 wind 9.0 270 < th dose independent rect. 6 7
456 305.03 temperature 10.0 270 > th dose independent rect. 1 6
458 305.03 temperature 30.0 270 < th dose independent rect. 1 6
459 305.03 humidity 50.0 270 > th dose independent rect. 1 6
461 305.03 atmosphere 995.0 270 > th dose independent rect. 1 6
462 305.03 atmosphere 1015.0 270 < th dose independent rect. 1 6
466 305.23 wind 9.0 270 < th dose independent rect. 13 17
468 305.35 atmosphere 1015.0 270 < th dose independent rect. 7 18
482 306.02 humidity 50.0 10 > th dose dependent rect. 20 7
486 306.43 wind 9.0 270 < th dose independent rect. 7 18
496 307.87 atmosphere 1015.0 270 < th dose independent rect. 7 16
507 308.73 radiation 30.0 14400 < th dose dependent rect. 21 7
529 311.06 wind 7.0 270 < th dose independent rect. 23 8
542 311.91 precipitation 0.1 270 < th dose independent rect. 23 8
543 311.91 precipitation 0.1 270 < th dose dependent rect. 23 8
546 312.05 radiation 20.0 270 < th dose independent rect. 23 8
547 312.17 humidity 70.0 270 > th dose independent rect. 23 8
559 312.38 temperature 10.0 270 > th dose independent rect. 23 8
560 312.38 temperature 30.0 270 < th dose independent rect. 23 8
561 312.38 humidity 50.0 270 > th dose independent rect. 23 8
563 312.38 atmosphere 995.0 270 > th dose independent rect. 23 8
568 312.49 atmosphere 1015.0 270 < th dose independent rect. 19 17
583 313.42 temperature 10.0 10 > th dose dependent rect. 20 18
607 314.58 radiation 40.0 90 < th dose dependent rect. 3 6
608 314.61 wind 9.0 270 < th dose independent rect. 7 16
647 315.58 wind 1.0 270 > th dose independent rect. 1 6
648 315.69 atmosphere 995.0 90 > th dose independent rect. 3 16
650 316.07 precipitation 0.1 270 < th dose independent rect. 12 7
651 316.07 precipitation 0.1 270 < th dose dependent rect. 12 7
656 316.12 atmosphere 1010.0 270 < th dose independent rect. 12 7
663 316.38 precipitation 0.1 270 < th dose independent rect. 7 18
664 316.38 precipitation 0.1 270 < th dose dependent rect. 7 18
669 316.47 temperature 10.0 270 > th dose independent rect. 12 7
673 316.47 atmosphere 995.0 270 > th dose independent rect. 19 17
675 316.87 humidity 50.0 270 > th dose independent rect. 6 7
680 317.36 radiation 20.0 90 < th dose independent rect. 3 6
692 317.57 radiation 1.0 270 > th dose independent rect. 6 7
695 317.60 wind 9.0 270 < th dose independent rect. 19 17
701 317.76 wind 9.0 270 < th dose independent rect. 12 7
706 317.88 atmosphere 995.0 270 > th dose independent rect. 1 17
726 319.00 wind 1.0 270 > th dose independent rect. 12 7
728 319.02 radiation 10.0 1440 < th dose dependent rect. 21 7
731 319.04 temperature 10.0 1440 > th dose independent rect. 21 7
734 319.04 temperature 30.0 1440 < th dose independent rect. 21 7
738 319.04 humidity 50.0 1440 > th dose independent rect. 21 7
744 319.04 atmosphere 995.0 1440 > th dose independent rect. 21 7
745 319.04 radiation 1.0 1440 < th dose independent rect. 21 7
765 319.04 temperature 10.0 1440 > th dose independent rect. 4 17
808 320.95 humidity 50.0 270 > th dose dependent rect. 1 6
810 321.00 wind 9.0 270 < th dose dependent rect. 1 6
814 321.30 wind 1.0 270 > th dose independent rect. 7 18
818 321.61 atmosphere 995.0 10 > th dose independent rect. 3 17
832 322.17 wind 7.0 270 < th dose independent rect. 3 1
835 322.20 atmosphere 995.0 270 > th dose independent rect. 7 18
839 322.48 precipitation 0.1 270 < th dose independent rect. 19 17
840 322.48 precipitation 0.1 270 < th dose dependent rect. 19 17
849 322.88 temperature 10.0 270 > th dose independent rect. 3 1
851 322.88 temperature 30.0 270 < th dose independent rect. 3 1
852 322.88 humidity 50.0 270 > th dose independent rect. 3 1
855 322.88 atmosphere 995.0 270 > th dose independent rect. 3 1
856 322.88 atmosphere 1010.0 270 < th dose independent rect. 3 1
858 322.88 radiation 1.0 270 < th dose independent rect. 3 1
863 322.88 temperature 10.0 270 > th dose independent rect. 4 23
864 322.88 radiation 1.0 270 < th dose dependent rect. 3 1
876 323.04 radiation 1.0 270 > th dose independent rect. 4 9
895 323.42 radiation 1.0 270 < th dose dependent rect. 8 17
896 323.45 radiation 1.0 270 < th dose dependent rect. 6 19
897 323.51 radiation 30.0 10 < th dose independent rect. 3 6
898 323.51 humidity 50.0 270 > th dose independent rect. 19 16
906 323.70 precipitation 0.1 270 < th dose independent rect. 3 1
909 323.70 precipitation 0.1 270 < th dose dependent rect. 3 1
912 323.73 radiation 40.0 270 < th dose independent rect. 14 16
914 323.77 radiation 40.0 10 < th dose dependent rect. 3 6
918 323.87 precipitation 0.1 270 < th dose independent rect. 7 16
919 323.87 precipitation 0.1 270 < th dose dependent rect. 7 16
939 324.63 atmosphere 1015.0 10 < th dose independent rect. 9 18
947 325.03 atmosphere 995.0 270 > th dose independent rect. 13 17
962 325.32 wind 5.0 10 < th dose independent rect. 3 6
965 325.38 wind 9.0 30 < th dose dependent rect. 3 6
966 325.43 radiation 1.0 270 < th dose independent rect. 8 17
967 325.47 temperature 10.0 270 > th dose dependent rect. 1 6
968 325.62 wind 7.0 270 < th dose independent rect. 2 3
983 325.95 precipitation 0.1 270 < th dose independent rect. 2 3
984 325.95 precipitation 0.1 270 < th dose dependent rect. 2 3
990 326.08 radiation 1.0 270 < th dose independent rect. 2 3
994 326.13 precipitation 0.1 30 < th dose independent rect. 3 6
995 326.13 precipitation 0.1 30 < th dose dependent rect. 3 6
1000 326.25 temperature 10.0 270 > th dose independent rect. 2 3