BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0197600 Os02g0197600|AK068102
(180 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0197600 Similar to PSI type III chlorophyll a/b-bindin... 263 6e-71
Os09g0296800 Chlorophyll A-B binding protein family protein 82 1e-16
Os02g0764500 Similar to Lhca5 protein 82 2e-16
AK058312 75 3e-14
Os09g0439500 Similar to Type II chlorophyll a/b binding pro... 75 4e-14
Os07g0562700 Similar to Type III chlorophyll a/b-binding pr... 74 6e-14
Os09g0346500 Similar to Chlorophyll a-b binding protein, ch... 74 7e-14
Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast... 74 8e-14
Os01g0720500 Similar to Type I chlorophyll a/b-binding prot... 73 1e-13
Os06g0320500 Similar to Light-harvesting complex I (Fragment) 73 1e-13
AK060800 73 1e-13
Os03g0592500 Similar to Photosystem II type II chlorophyll ... 72 3e-13
D85512 71 5e-13
Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment) 69 2e-12
Os07g0577600 Similar to Type II chlorophyll a/b binding pro... 69 2e-12
>Os02g0197600 Similar to PSI type III chlorophyll a/b-binding protein
Length = 180
Score = 263 bits (671), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 138/180 (76%), Positives = 138/180 (76%)
Query: 1 QAAVVRIQAVPELPGWHASGRLRVRPAGAIGPGGDRWVHRATVAGLXXXXXXXXXXXXXX 60
QAAVVRIQAVPELPGWHASGRLRVRPAGAIGPGGDRWVHRATVAGL
Sbjct: 1 QAAVVRIQAVPELPGWHASGRLRVRPAGAIGPGGDRWVHRATVAGLRRGVQRPDGDDGRR 60
Query: 61 XXXXXXXXXXXXXXXXFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYXXXXXXXXXXXXTK 120
FQDWYTPGSMGKQYFLGLEKYLAGSGEPAY TK
Sbjct: 61 RHGRPGAPRQAGPRPRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGFGTK 120
Query: 121 SEAEMKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSLKFH 180
SEAEMKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSLKFH
Sbjct: 121 SEAEMKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSLKFH 180
>Os09g0296800 Chlorophyll A-B binding protein family protein
Length = 321
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 49/59 (83%)
Query: 119 TKSEAEMKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSL 177
+K ++LK+KEIKNGRLAM+A+LGF +QA TG GP+QNL++HL+DP+HNNIL+S
Sbjct: 262 SKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILSSF 320
>Os02g0764500 Similar to Lhca5 protein
Length = 261
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 77 FQDWYTPGSMGKQ-YFLGLEKYLAGSGEPAYXXXXXXXXXXXXTKSEAEMKELKLKEIKN 135
+ D+ PGS ++ FLG+E LAGS +P Y E E KLKEIKN
Sbjct: 159 YMDFINPGSQAEEGTFLGIEAALAGS-QPGYPGGPLFNPLGLAKDIE-NADEAKLKEIKN 216
Query: 136 GRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSLK 178
GRLAM+A LGF VQA T VGP+ NLL HL+DP + NI+ +L
Sbjct: 217 GRLAMVAMLGFIVQASVTHVGPIDNLLTHLSDPFNKNIIHTLS 259
>AK058312
Length = 266
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 40/46 (86%)
Query: 127 ELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNN 172
ELK+KEIKNGRLAM + GF VQA+ TG GP++NLLDHLADPV+NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLADPVNNN 254
>Os09g0439500 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 264
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 41/53 (77%)
Query: 128 LKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSLKFH 180
L+ KEIKNGRLAMLAF+GF QA++TG GP+ NLL HLADP H N+ ++ H
Sbjct: 212 LRTKEIKNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTSH 264
>Os07g0562700 Similar to Type III chlorophyll a/b-binding protein (Fragment)
Length = 266
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 39/46 (84%)
Query: 127 ELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNN 172
ELK+KEIKNGRLAM + GF VQA+ TG GP++NLLDHLADPV NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLADPVANN 254
>Os09g0346500 Similar to Chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP)
Length = 265
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 39/46 (84%)
Query: 127 ELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNN 172
ELK+KEIKNGRLAM + GF VQA+ TG GP++NL DHLADPV+NN
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast precursor (LHCII
type I CAB-2) (LHCP)
Length = 261
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 39/46 (84%)
Query: 127 ELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNN 172
ELK+KEIKNGRLAM + GF VQA+ TG GP++NL DHLADPV+NN
Sbjct: 204 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 249
>Os01g0720500 Similar to Type I chlorophyll a/b-binding protein b (Fragment)
Length = 265
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 39/46 (84%)
Query: 127 ELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNN 172
ELK+KEIKNGRLAM + GF VQA+ TG GP++NL DHLADPV+NN
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>Os06g0320500 Similar to Light-harvesting complex I (Fragment)
Length = 241
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Query: 119 TKSEAEMKELKLKEIKNGRLAMLAFLGFSV-QALFTGVGPVQNLLDHLADPVHNNI 173
+K + +E KLKEIKNGRLAMLAF+GF V Q+ + G GP++NL HL+DP HNNI
Sbjct: 175 SKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNNI 230
>AK060800
Length = 241
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Query: 119 TKSEAEMKELKLKEIKNGRLAMLAFLGFSV-QALFTGVGPVQNLLDHLADPVHNNI 173
+K + +E KLKEIKNGRLAMLAF+GF V Q+ + G GP++NL HL+DP HNNI
Sbjct: 175 SKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNNI 230
>Os03g0592500 Similar to Photosystem II type II chlorophyll a/b binding protein
(Fragment)
Length = 263
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 38/46 (82%)
Query: 127 ELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNN 172
ELK+KE+KNGRLAM + GF VQA+ TG GP++NL DH+ADPV NN
Sbjct: 206 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251
>D85512
Length = 124
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 38/48 (79%)
Query: 128 LKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILT 175
LKLKEIKNGRLAM + LGF +QA TG GPV+NL HL+DP NN+LT
Sbjct: 65 LKLKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLT 112
>Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment)
Length = 283
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 39/51 (76%)
Query: 128 LKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSLK 178
LK+KEIKNGRLAM + LGF +QA TG GPV+NL HL+DP NN+LT +
Sbjct: 224 LKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVIS 274
>Os07g0577600 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 263
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 40/59 (67%)
Query: 119 TKSEAEMKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSL 177
T S ++KEL+ KEIKNGRLAMLA +G QA +TG GP+ NL HLADP H I +
Sbjct: 202 TGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAF 260
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,898,455
Number of extensions: 142741
Number of successful extensions: 339
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 15
Length of query: 180
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 86
Effective length of database: 12,127,685
Effective search space: 1042980910
Effective search space used: 1042980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)