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Os06g0320500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Light-harvesting complex I (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 16 (0.0347) R2 : 0.826
β1 : -0.994 (0.127) R2dD : 0.0249 R2D : -0.00884
β2 : -- (--) R2dC : -- R2C : --
β3 : -4.17 (0.0986) R2dE : 0.684 R2E : 0.697
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.14 (0.0742) R2dN8 : 0.122 R2N8 : 0.104
σ : 0.648
deviance : 193.84
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 11.62
memory length : 221
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.4
open length of G : 7.64

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
175.17 0.622 16 -1 0.464 -3.87 2.92 1.49 -1.12 15 12.71 221 19.4 7.39
174.99 0.616 16 -1.07 0.504 -3.77 2.21 -- -1.12 15.4 12.38 197 19.5 7.52
186.54 0.636 16 -1.13 0.276 -4.31 -- -2.16 -1.16 22.2 11.32 217 19.3 7.73
190.47 0.643 15.9 -0.978 0.434 -3.91 -- -- -1.09 15.9 12.83 200 19.4 7.53
188.15 0.639 16 -1.1 -- -4.07 -- -1.79 -1.18 -- 10.96 219 19.3 7.72
369.76 0.901 16 -1.3 3.01 -- 2.29 -- -1.3 13.3 -- -- -- --
391.25 0.926 16 -1.22 3.01 -- -- -- -1.29 13.3 -- -- -- --
193.84 0.648 16 -0.994 -- -4.17 -- -- -1.14 -- 11.62 221 19.4 7.64
216.12 0.685 15.9 -- 0.466 -4 -- -- -0.983 15.8 13.82 208 19.4 7.52
949.35 1.44 16 -1.33 -- -- -- -- -1.35 -- -- -- -- --
430.35 0.97 15.9 -- 3.03 -- -- -- -1.15 13.3 -- -- -- --
219.21 0.69 15.9 -- -- -4.28 -- -- -1.01 -- 12.81 227 19.3 7.67
996.33 1.47 16 -- -- -- -- -- -1.2 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 184.23 temperature 15.0 270 > th dose dependent rect. 19 7
14 206.61 temperature 15.0 10 > th dose dependent rect. 20 9
22 213.67 temperature 20.0 90 > th dose independent rect. 20 7
82 235.37 temperature 20.0 10 > th dose independent rect. 20 9
87 237.01 atmosphere 1010.0 270 < th dose independent rect. 19 7
97 238.40 temperature 10.0 270 > th dose dependent rect. 2 5
99 238.70 temperature 20.0 90 > th dose independent rect. 9 18
110 241.29 humidity 50.0 270 > th dose dependent rect. 2 5
119 242.73 radiation 20.0 270 < th dose independent rect. 2 5
121 242.86 precipitation 0.1 270 < th dose independent rect. 2 5
122 242.86 precipitation 0.1 270 < th dose dependent rect. 2 5
123 242.90 humidity 70.0 270 > th dose independent rect. 2 5
128 243.32 wind 9.0 270 < th dose independent rect. 2 5
129 243.32 temperature 10.0 270 > th dose independent rect. 2 5
131 243.32 temperature 30.0 270 < th dose independent rect. 2 5
132 243.32 humidity 50.0 270 > th dose independent rect. 2 5
134 243.32 atmosphere 995.0 270 > th dose independent rect. 2 5
135 243.32 atmosphere 1015.0 270 < th dose independent rect. 2 5
137 243.32 temperature 10.0 270 > th dose independent rect. 7 19
140 243.42 atmosphere 1015.0 270 < th dose independent rect. 7 19
158 245.30 wind 9.0 270 < th dose independent rect. 7 19
163 245.61 radiation 40.0 270 < th dose dependent rect. 2 5
164 245.81 humidity 60.0 270 > th dose independent rect. 18 9
170 246.36 radiation 1.0 270 < th dose independent rect. 18 9
172 246.42 radiation 10.0 270 < th dose dependent rect. 18 9
174 246.53 atmosphere 1015.0 90 < th dose independent rect. 9 18
189 247.18 temperature 10.0 270 > th dose independent rect. 3 15
190 247.18 atmosphere 1015.0 270 < th dose independent rect. 3 15
192 247.19 temperature 30.0 270 < th dose independent rect. 18 9
196 247.31 wind 9.0 270 < th dose independent rect. 3 15
198 247.36 atmosphere 995.0 270 > th dose independent rect. 18 9
202 247.57 atmosphere 1010.0 10 < th dose independent rect. 20 9
204 247.63 wind 9.0 270 < th dose independent rect. 18 9
205 247.65 precipitation 0.1 270 < th dose independent rect. 7 19
206 247.65 precipitation 0.1 270 < th dose dependent rect. 7 19
212 247.80 wind 9.0 270 < th dose independent rect. 14 17
223 248.29 temperature 10.0 270 > th dose independent rect. 7 7
224 248.29 atmosphere 995.0 270 > th dose independent rect. 7 7
225 248.29 atmosphere 1015.0 270 < th dose independent rect. 7 7
226 248.29 temperature 10.0 270 > th dose independent rect. 14 17
246 248.48 precipitation 0.1 270 < th dose independent rect. 7 7
247 248.48 precipitation 0.1 270 < th dose dependent rect. 7 7
255 248.59 temperature 10.0 90 > th dose independent rect. 9 18
256 248.61 precipitation 0.1 270 < th dose independent rect. 3 15
257 248.61 precipitation 0.1 270 < th dose dependent rect. 3 15
259 248.75 wind 9.0 270 < th dose dependent rect. 2 5
272 249.05 radiation 40.0 270 < th dose independent rect. 14 17
292 249.26 wind 9.0 270 < th dose independent rect. 7 7
298 249.55 precipitation 0.1 270 < th dose independent rect. 14 17
299 249.55 precipitation 0.1 270 < th dose dependent rect. 14 17
325 250.53 wind 1.0 270 > th dose independent rect. 19 8
362 251.00 radiation 1.0 10 < th dose dependent rect. 20 9
369 251.24 wind 9.0 90 < th dose independent rect. 9 18
397 251.81 wind 9.0 10 < th dose independent rect. 5 15
407 251.98 temperature 30.0 10 < th dose independent rect. 20 9
408 251.98 humidity 50.0 10 > th dose independent rect. 20 9
411 251.98 atmosphere 995.0 10 > th dose independent rect. 20 9
412 251.98 radiation 1.0 10 < th dose independent rect. 20 9
417 251.98 temperature 10.0 10 > th dose independent rect. 5 15
419 251.98 atmosphere 1015.0 10 < th dose independent rect. 5 15
420 252.00 wind 9.0 10 < th dose independent rect. 20 9
426 252.45 precipitation 0.1 90 < th dose independent rect. 9 18
427 252.45 precipitation 0.1 90 < th dose dependent rect. 9 18
428 252.48 precipitation 0.1 270 < th dose independent rect. 19 8
429 252.48 precipitation 0.1 270 < th dose dependent rect. 19 8
440 252.88 precipitation 0.1 10 < th dose independent rect. 5 15
441 252.88 precipitation 0.1 10 < th dose dependent rect. 5 15
503 254.25 radiation 1.0 270 > th dose independent rect. 7 7
514 254.38 atmosphere 995.0 270 > th dose independent rect. 7 19
536 254.66 wind 1.0 270 > th dose independent rect. 7 19
541 254.81 humidity 50.0 270 > th dose independent rect. 7 19
583 255.52 temperature 25.0 270 < th dose independent rect. 17 14
611 256.66 temperature 20.0 30 > th dose independent rect. 11 16
612 256.67 precipitation 0.1 10 < th dose independent rect. 20 9
613 256.67 precipitation 0.1 10 < th dose dependent rect. 20 9
614 256.70 atmosphere 995.0 270 > th dose independent rect. 14 17
643 257.63 atmosphere 995.0 10 > th dose independent rect. 5 15
648 257.83 humidity 50.0 270 > th dose independent rect. 7 7
690 258.84 atmosphere 995.0 270 > th dose independent rect. 3 16
742 259.33 atmosphere 995.0 90 > th dose independent rect. 9 18
828 261.47 radiation 1.0 270 < th dose dependent rect. 6 21
834 261.61 wind 1.0 270 > th dose independent rect. 7 7
936 263.90 atmosphere 995.0 270 > th dose dependent rect. 3 4
937 263.91 wind 1.0 270 > th dose independent rect. 2 5
976 264.42 wind 9.0 90 < th dose dependent rect. 20 7