BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0320500 Os06g0320500|AK060904
(241 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0320500 Similar to Light-harvesting complex I (Fragment) 498 e-141
AK060800 498 e-141
Os08g0435900 Similar to LHC I type IV chlorophyll binding p... 155 3e-38
Os07g0558400 Similar to Chlorophyll a/b-binding protein CP2... 151 4e-37
Os09g0296800 Chlorophyll A-B binding protein family protein 146 1e-35
Os07g0577600 Similar to Type II chlorophyll a/b binding pro... 140 8e-34
Os03g0592500 Similar to Photosystem II type II chlorophyll ... 140 1e-33
Os02g0764500 Similar to Lhca5 protein 139 2e-33
Os09g0346500 Similar to Chlorophyll a-b binding protein, ch... 137 5e-33
Os01g0720500 Similar to Type I chlorophyll a/b-binding prot... 137 6e-33
Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment) 136 1e-32
Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast... 136 2e-32
AK058312 132 2e-31
Os07g0562700 Similar to Type III chlorophyll a/b-binding pr... 132 3e-31
Os09g0439500 Similar to Type II chlorophyll a/b binding pro... 132 3e-31
Os02g0197600 Similar to PSI type III chlorophyll a/b-bindin... 83 2e-16
Os04g0457000 Similar to Chlorophyll a/b-binding protein CP2... 82 3e-16
>Os06g0320500 Similar to Light-harvesting complex I (Fragment)
Length = 241
Score = 498 bits (1282), Expect = e-141, Method: Compositional matrix adjust.
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MATSGLRSCSAVGVPSLLAPSSNRSRLPVCAYATTSGRVTMSAEWMPGQPRPAHLDGSSP 60
MATSGLRSCSAVGVPSLLAPSSNRSRLPVCAYATTSGRVTMSAEWMPGQPRPAHLDGSSP
Sbjct: 1 MATSGLRSCSAVGVPSLLAPSSNRSRLPVCAYATTSGRVTMSAEWMPGQPRPAHLDGSSP 60
Query: 61 GDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPG 120
GDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPG
Sbjct: 61 GDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPG 120
Query: 121 GQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKDPVK 180
GQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKDPVK
Sbjct: 121 GQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKDPVK 180
Query: 181 FEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNNIGDIIIPRTIY 240
FEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNNIGDIIIPRTIY
Sbjct: 181 FEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNNIGDIIIPRTIY 240
Query: 241 P 241
P
Sbjct: 241 P 241
>AK060800
Length = 241
Score = 498 bits (1282), Expect = e-141, Method: Compositional matrix adjust.
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MATSGLRSCSAVGVPSLLAPSSNRSRLPVCAYATTSGRVTMSAEWMPGQPRPAHLDGSSP 60
MATSGLRSCSAVGVPSLLAPSSNRSRLPVCAYATTSGRVTMSAEWMPGQPRPAHLDGSSP
Sbjct: 1 MATSGLRSCSAVGVPSLLAPSSNRSRLPVCAYATTSGRVTMSAEWMPGQPRPAHLDGSSP 60
Query: 61 GDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPG 120
GDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPG
Sbjct: 61 GDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPG 120
Query: 121 GQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKDPVK 180
GQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKDPVK
Sbjct: 121 GQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKDPVK 180
Query: 181 FEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNNIGDIIIPRTIY 240
FEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNNIGDIIIPRTIY
Sbjct: 181 FEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNNIGDIIIPRTIY 240
Query: 241 P 241
P
Sbjct: 241 P 241
>Os08g0435900 Similar to LHC I type IV chlorophyll binding protein (Fragment)
Length = 244
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 129/245 (52%), Gaps = 33/245 (13%)
Query: 3 TSGLRSCSAVGVPSLLAPSSNRSRLPVCAYATTSGRVTMSAEWMPGQPRPAHLDGSSPGD 62
+ LRS +++ L S+ +R P R EW+PG P P +L+GS PGD
Sbjct: 10 VAALRSSASLKSTFLGQSSTRLARAPTTRRNV---RAEAKGEWLPGLPSPTYLNGSLPGD 66
Query: 63 FGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPGGQ 122
GFDPLGLA PEN F ++E+ + RWAML V G+L+PE L + A +W G+
Sbjct: 67 NGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWY--DAGK 124
Query: 123 ATYLGNPVPWGTLPTILVIEFVAIAFAEHQR--------TMEKDPEKKK---------YP 165
ATY + T+ VIEF+ + E +R + +DP K YP
Sbjct: 125 ATYFASS------STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSYSLPPHECGYP 178
Query: 166 GGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDP 225
G F+PL F +P E K KE+ NGRLAMLAF+GF VQ + GP +NL HLSDP
Sbjct: 179 GSVFNPLNF--EPTL--EAKEKELANGRLAMLAFLGFLVQHNV-TQKGPFDNLLQHLSDP 233
Query: 226 WHNNI 230
WHN I
Sbjct: 234 WHNTI 238
>Os07g0558400 Similar to Chlorophyll a/b-binding protein CP29 precursor
Length = 290
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 119/232 (51%), Gaps = 48/232 (20%)
Query: 45 WMPGQPRPAHLDGSSPGDFGFDPLGLATVPE----------------------------- 75
W PG P +LDGS GD+GFDP GL E
Sbjct: 57 WFPGAVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGEIIGTRFETG 116
Query: 76 --------------NFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPGG 121
+RF+E E+ H RWAMLA G L E L W A + G
Sbjct: 117 EVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG- 175
Query: 122 QATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGA-FDPLGFSKDPVK 180
++YLG P+P+ ++ T++ IE + I + E QR E DPEK+ YPGG+ FDPLG + DP K
Sbjct: 176 -SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEK 233
Query: 181 FEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNNIGD 232
E +L EIK+ RLAM+AF+GF VQ +A G GPL N A+HLSDP H I D
Sbjct: 234 KERLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIFD 284
>Os09g0296800 Chlorophyll A-B binding protein family protein
Length = 321
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/200 (45%), Positives = 113/200 (56%), Gaps = 22/200 (11%)
Query: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQ 111
PAHL G PGD+GFD GL P F + E+ HCRWAMLA GV+VPE L L V
Sbjct: 118 PAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGVVH 177
Query: 112 AQE-------WAAEPGGQATYLGNP---VPWGT-LPTILVIEFVAIAFAEHQRTMEKD-- 158
E +A G YLG P + G + I + + + + E+ R +
Sbjct: 178 FVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLMVGPEYARYCGIEAL 237
Query: 159 -------PEKKKYPGGA-FDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 210
P YPGGA FDPLG SKDPV FE+ K+KEIKNGRLAM+A++GF + Q+A
Sbjct: 238 EPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYI-QAAVT 296
Query: 211 GTGPLENLASHLSDPWHNNI 230
G GP++NL HLSDP HNNI
Sbjct: 297 GKGPIQNLVEHLSDPLHNNI 316
>Os07g0577600 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 263
Score = 140 bits (353), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 124/249 (49%), Gaps = 36/249 (14%)
Query: 16 SLLAPSSNRSRLPVCAYATTSGRVTMSAE--------WMPGQPRPAHLDGSSPGDFGFDP 67
S L + RL + ++S R + + W PG P LDGS PGDFGFDP
Sbjct: 24 SFLGGAGRSGRLLLRQAESSSARASFAVRAAAPDRPIWFPGSTPPPWLDGSLPGDFGFDP 83
Query: 68 LGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPGGQATYLG 127
LGL + PE+ ++E+ HCRWAML G+ +PE L + W G+ Y
Sbjct: 84 LGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYT--AGEQQYFT 141
Query: 128 NPVPWGTLPTILVIEFVAIAFAEHQR--------TMEKDP---------EKKKYPGGA-F 169
+ T+ +IE + I +AE +R + DP YPGG F
Sbjct: 142 DTT------TLFIIELILIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 195
Query: 170 DPLGF-SKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHN 228
DPLG+ + P K +E + KEIKNGRLAMLA +G Q+ Y GTGP++NL +HL+DP H
Sbjct: 196 DPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWF-QAEYTGTGPIDNLFAHLADPGHA 254
Query: 229 NIGDIIIPR 237
I P+
Sbjct: 255 TIFQAFTPK 263
>Os03g0592500 Similar to Photosystem II type II chlorophyll a/b binding protein
(Fragment)
Length = 263
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 128/259 (49%), Gaps = 38/259 (14%)
Query: 1 MATSGLRSCSAVGVPSLLAPSSNRSRLPVCAYATTSGRVTM---------SAEWMPGQPR 51
MA S L + S L + R L V + GR+TM S + P +P+
Sbjct: 1 MAASALHQTT-----SFLGTAPRRDEL-VRRVGDSGGRITMRRTVKSAPQSIWYGPDRPK 54
Query: 52 ---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPE 102
P++L G PGD+G+D GL+ PE F R +E EV H RWAML G + PE
Sbjct: 55 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 114
Query: 103 AL-------GLGNWVQAQEWAAEPGGQATYLGNP--VPWGTLPTILVIEFVAIAFAEHQR 153
L G W +A GG YLGNP V ++ I ++ V + F E R
Sbjct: 115 ILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR 173
Query: 154 TMEK---DPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 210
+ K YPGGAFDPLG + DP F E K+KE+KNGRLAM + GF V Q+
Sbjct: 174 VGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVT 232
Query: 211 GTGPLENLASHLSDPWHNN 229
G GP+ENL H++DP NN
Sbjct: 233 GKGPIENLFDHVADPVANN 251
>Os02g0764500 Similar to Lhca5 protein
Length = 261
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 124/243 (51%), Gaps = 35/243 (14%)
Query: 8 SCSAVGVPSLLAPSSNRSRLPVCAYATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDP 67
S S +P S R+R+ V A T A W+PG P HLDG+ PGDFGFDP
Sbjct: 27 SRSMAAIPGHHVFQSPRARIAVRAS-------TERATWLPGLDPPPHLDGTLPGDFGFDP 79
Query: 68 LGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPGGQATYLG 127
LGL P N + + ++E+ HCR+AM V G+L + + + W E G
Sbjct: 80 LGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGINNLPVW-FEAGATKFDFA 138
Query: 128 NPVPWGTLPTILVIEFVAIAFAEHQRTME-KDPEKKK------------------YPGG- 167
N + ++ + + FAE +R M+ +P + YPGG
Sbjct: 139 NTT------ALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLGIEAALAGSQPGYPGGP 192
Query: 168 AFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWH 227
F+PLG +KD +E KLKEIKNGRLAM+A +GF VQ S GP++NL +HLSDP++
Sbjct: 193 LFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVT-HVGPIDNLLTHLSDPFN 251
Query: 228 NNI 230
NI
Sbjct: 252 KNI 254
>Os09g0346500 Similar to Chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP)
Length = 265
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 110/199 (55%), Gaps = 21/199 (10%)
Query: 46 MPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEAL- 104
+ G+P P++L G PGD+G+D GL+ PE F + +E EV H RWAML G + PE L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 105 ------GLGNWVQAQEWAAEPGGQATYLGNP--VPWGTLPTILVIEFVAIAFAEHQRTME 156
G W +A GG YLGNP + ++ I ++ V + E R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 178
Query: 157 K------DPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 210
DP YPGGAFDPLG + DP F E K+KEIKNGRLAM + GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 234
Query: 211 GTGPLENLASHLSDPWHNN 229
G GPLENLA HL+DP +NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>Os01g0720500 Similar to Type I chlorophyll a/b-binding protein b (Fragment)
Length = 265
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 110/199 (55%), Gaps = 21/199 (10%)
Query: 46 MPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEAL- 104
+ G+P P++L G PGD+G+D GL+ PE F + +E EV HCRWAML G + PE L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 105 ------GLGNWVQAQEWAAEPGGQATYLGNP--VPWGTLPTILVIEFVAIAFAEHQRTME 156
G W +A GG YLGNP + ++ I + V + E R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVAG 178
Query: 157 K------DPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 210
DP YPGG+FDPLG + DP F E K+KEIKNGRLAM + GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 234
Query: 211 GTGPLENLASHLSDPWHNN 229
G GPLENLA HL+DP +NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment)
Length = 283
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 110/192 (57%), Gaps = 12/192 (6%)
Query: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGL----- 106
P +L+G PGD+G+DP GL+ PE+F +++ E+ H RWAML G ++PEA
Sbjct: 85 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 107 ---GNWVQAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTMEK-DPEKK 162
W + + G Y GN +P L + E V + AE+ R + D E K
Sbjct: 145 GPEAVWFKTGALLLD-GNTLNYFGNSIPI-NLIVAVAAEVVLVGGAEYYRIINGLDLEDK 202
Query: 163 KYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHL 222
+PGG FDPLG + DP + K+KEIKNGRLAM + +GF + Q+ G GP+ENL+ HL
Sbjct: 203 LHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGEGPVENLSKHL 261
Query: 223 SDPWHNNIGDII 234
SDP+ NN+ +I
Sbjct: 262 SDPFGNNLLTVI 273
>Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast precursor (LHCII
type I CAB-2) (LHCP)
Length = 261
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 110/199 (55%), Gaps = 21/199 (10%)
Query: 46 MPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEAL- 104
+ G+P P++L G PGD+G+D GL+ PE F + +E EV H RWAML G + PE L
Sbjct: 57 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 115
Query: 105 ------GLGNWVQAQEWAAEPGGQATYLGNP--VPWGTLPTILVIEFVAIAFAEHQRTME 156
G W +A GG YLGNP + ++ I ++ V + E R
Sbjct: 116 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 174
Query: 157 K------DPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 210
DP YPGG+FDPLG + DP F E K+KEIKNGRLAM + GF V Q+
Sbjct: 175 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 230
Query: 211 GTGPLENLASHLSDPWHNN 229
G GPLENLA HL+DP +NN
Sbjct: 231 GKGPLENLADHLADPVNNN 249
>AK058312
Length = 266
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 113/225 (50%), Gaps = 33/225 (14%)
Query: 33 ATTSGRVTMSAEWMPGQPR-----------PAHLDGSSPGDFGFDPLGLATVPENFERFK 81
A +GR+TMS E G R P++L G PGD+G+D GL+ PE F R +
Sbjct: 35 AAATGRITMSKELWYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNR 94
Query: 82 ESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEP-----------GGQATYLGNP- 129
EV H RWAML G + PE L WV+ EP G YLGNP
Sbjct: 95 ALEVIHGRWAMLGALGCITPEV--LEKWVRVD--FKEPVWFKAGAQIFSDGGLDYLGNPN 150
Query: 130 -VPWGTLPTILVIEFVAIAFAEHQRTM---EKDPEKKKYPGGA-FDPLGFSKDPVKFEEY 184
V ++ +L + V + E R YPGG FDPLG + DPV F E
Sbjct: 151 LVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGDGNDLYPGGQYFDPLGLADDPVTFAEL 210
Query: 185 KLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNN 229
K+KEIKNGRLAM + GF V Q+ G GPLENL HL+DP +NN
Sbjct: 211 KVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLADPVNNN 254
>Os07g0562700 Similar to Type III chlorophyll a/b-binding protein (Fragment)
Length = 266
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 112/225 (49%), Gaps = 33/225 (14%)
Query: 33 ATTSGRVTMSAEWMPGQPR-----------PAHLDGSSPGDFGFDPLGLATVPENFERFK 81
A +GR+TMS E G R P++L G PGD+G+D GL+ PE F R +
Sbjct: 35 AAATGRITMSKELWYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNR 94
Query: 82 ESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEP-----------GGQATYLGNP- 129
EV H RWAML G + PE L WV+ EP G YLGNP
Sbjct: 95 ALEVIHGRWAMLGALGCITPEV--LEKWVRVD--FKEPVWFKAGAQIFSDGGLDYLGNPN 150
Query: 130 -VPWGTLPTILVIEFVAIAFAEHQRTM---EKDPEKKKYPGGA-FDPLGFSKDPVKFEEY 184
V ++ +L + V + E R YPGG FDPLG + DPV F E
Sbjct: 151 LVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGDGNDLYPGGQYFDPLGLADDPVTFAEL 210
Query: 185 KLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNN 229
K+KEIKNGRLAM + GF V Q+ G GPLENL HL+DP NN
Sbjct: 211 KVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLADPVANN 254
>Os09g0439500 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 264
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 129/253 (50%), Gaps = 40/253 (15%)
Query: 7 RSCSAVGVPSLLAPSSNRSRLPVCAYATTSGRVTMSAE--------WMPGQPRPAHLDGS 58
R +A+ P+L + ++ +R+ T G V+ E W PG P LDGS
Sbjct: 16 RVRAALRAPTLPSQNAAVARMAGHRAGATKGGVSAVCEPLGPDRPLWFPGSSPPPWLDGS 75
Query: 59 SPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAE 118
PGDFGFDPLGL + PE F ++E+ H RWAMLAV G+LVPE L W ++++
Sbjct: 76 LPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILVPEV--LEKWGFMEDYSWI 133
Query: 119 PGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTME-----------KDPEKKK---- 163
G Y +P T+ V + + +AE +R + + P ++
Sbjct: 134 DAGARDYFADPW------TLFVSQMALMGWAEGRRWADYLNPGCVAVEPRLPNRRNPVPD 187
Query: 164 --YPGGAFDPLGF----SKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLEN 217
YPGG + G S +PV + KEIKNGRLAMLAFVGF Q+ Y G GP++N
Sbjct: 188 VGYPGGLWFDWGNWGRGSPEPVMV--LRTKEIKNGRLAMLAFVGFWF-QAVYTGEGPIDN 244
Query: 218 LASHLSDPWHNNI 230
L HL+DP H N+
Sbjct: 245 LLHHLADPGHCNV 257
>Os02g0197600 Similar to PSI type III chlorophyll a/b-binding protein
Length = 180
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 164 YPGG-AFDPLGF-SKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASH 221
YPGG F+PLGF +K + +E KLKEIKNGRLAMLAF+GF V Q+ + G GP++NL H
Sbjct: 106 YPGGPLFNPLGFGTKSEAEMKELKLKEIKNGRLAMLAFLGFSV-QALFTGVGPVQNLLDH 164
Query: 222 LSDPWHNNI 230
L+DP HNNI
Sbjct: 165 LADPVHNNI 173
>Os04g0457000 Similar to Chlorophyll a/b-binding protein CP24, photosystem II
(Fragment)
Length = 252
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 112/232 (48%), Gaps = 30/232 (12%)
Query: 9 CSAVGVPSLLAPSSNRSRLPVCAYATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPL 68
+AVGV A + R L V A + AE++ P LDGS PGDFGFDPL
Sbjct: 27 ANAVGVAG--AKPAPRRALVVSAKKSWIPAFKSDAEFI----NPPWLDGSLPGDFGFDPL 80
Query: 69 GLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQ--AQEWAAEPGGQATYL 126
GL P + ++E+E+ H RWAM AV G+ V +A W + AQ A P + L
Sbjct: 81 GLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGAQPEAIAPFSFGSLL 140
Query: 127 GNP-VPWGTLPTILVIEFV-----AIAFAE-HQRTMEKDPE---KKKYPGGA-FDPLGF- 174
G + G + + ++F A+ +A RT E ++ YPGG FDPLG
Sbjct: 141 GTQLLLMGWVESKRWVDFFNPDSQAVEWATPWSRTAENFSNATGEQGYPGGKFFDPLGLG 200
Query: 175 --SKDPV------KFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENL 218
++D V K + KL EIK+ RLAMLA + F + A G PL L
Sbjct: 201 GETRDGVYIPDTDKLDRLKLAEIKHARLAMLAMLIFYFE--AGQGKTPLGAL 250
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,870,034
Number of extensions: 452384
Number of successful extensions: 1223
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 1164
Number of HSP's successfully gapped: 17
Length of query: 241
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 143
Effective length of database: 11,918,829
Effective search space: 1704392547
Effective search space used: 1704392547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)