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Os03g0592500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Photosystem II type II chlorophyll a/b binding protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.9 (0.0415) R2 : 0.925
β1 : -0.757 (0.152) R2dD : 0.00466 R2D : 0.00469
β2 : -- (--) R2dC : -- R2C : --
β3 : -8.73 (0.12) R2dE : 0.887 R2E : 0.904
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.792 (0.0888) R2dN8 : 0.0194 R2N8 : 0.0273
σ : 0.776
deviance : 277.5
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 12.84
memory length : 256
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.3
open length of G : 8.13

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
260.87 0.759 14.9 -0.709 1.8 -7.77 2.84 4.24 -0.819 11.4 15.42 261 19 7.17
264.91 0.758 14.9 -0.785 1.5 -7.94 1.39 -- -0.754 10.9 15.6 266 18.6 7.67
263.93 0.757 14.9 -0.814 1.35 -7.84 -- -0.471 -0.822 10.9 15.1 233 18.8 7.87
263.37 0.756 14.9 -0.779 1.26 -7.93 -- -- -0.801 10.6 14.77 232 18.8 7.87
293.62 0.798 14.9 -0.623 -- -8.53 -- 0.666 -0.687 -- 12.99 224 18.7 8.15
981.87 1.47 14.9 -1.46 6.33 -- 2.59 -- -1.28 12.2 -- -- -- --
1010.88 1.49 14.9 -1.36 6.32 -- -- -- -1.27 12.2 -- -- -- --
277.5 0.776 14.9 -0.757 -- -8.73 -- -- -0.792 -- 12.84 256 18.3 8.13
280.03 0.779 14.9 -- 1.22 -8.07 -- -- -0.752 10.4 14.85 235 18.8 7.89
3528.25 2.78 15 -1.56 -- -- -- -- -1.36 -- -- -- -- --
1059.47 1.52 14.9 -- 6.34 -- -- -- -1.12 12.2 -- -- -- --
293.01 0.797 14.9 -- -- -8.92 -- -- -0.776 -- 13.41 255 18.3 8.1
3592.66 2.8 15 -- -- -- -- -- -1.19 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 269.64 temperature 15.0 270 > th dose dependent rect. 19 7
29 398.32 temperature 20.0 270 > th dose independent rect. 19 7
44 419.79 temperature 20.0 90 > th dose independent rect. 9 18
198 542.48 temperature 10.0 90 > th dose dependent rect. 9 18
212 551.20 atmosphere 1015.0 270 < th dose independent rect. 7 19
223 555.90 atmosphere 1010.0 270 < th dose independent rect. 18 8
258 572.25 atmosphere 1015.0 270 < th dose independent rect. 6 21
260 572.79 radiation 10.0 270 < th dose independent rect. 3 3
262 573.33 atmosphere 1015.0 90 < th dose independent rect. 9 18
266 575.03 temperature 10.0 10 > th dose dependent rect. 9 18
270 576.19 radiation 20.0 270 < th dose independent rect. 2 5
272 576.31 temperature 10.0 270 > th dose dependent rect. 3 3
276 576.87 humidity 70.0 270 > th dose independent rect. 2 5
278 577.39 precipitation 0.1 270 < th dose independent rect. 2 5
279 577.39 precipitation 0.1 270 < th dose dependent rect. 2 5
283 578.13 wind 7.0 270 < th dose independent rect. 2 5
285 578.19 temperature 10.0 270 > th dose independent rect. 2 5
287 578.19 temperature 30.0 270 < th dose independent rect. 2 5
288 578.19 humidity 50.0 270 > th dose independent rect. 2 5
290 578.19 atmosphere 995.0 270 > th dose independent rect. 2 5
291 578.19 atmosphere 1015.0 270 < th dose independent rect. 2 5
298 578.78 radiation 40.0 270 < th dose dependent rect. 2 5
299 579.26 radiation 20.0 270 < th dose dependent rect. 3 3
303 579.80 precipitation 0.1 270 < th dose independent rect. 3 3
304 579.80 precipitation 0.1 270 < th dose dependent rect. 3 3
305 580.09 wind 7.0 270 < th dose independent rect. 3 3
309 580.73 temperature 10.0 270 > th dose independent rect. 3 3
311 580.73 temperature 30.0 270 < th dose independent rect. 3 3
312 580.73 humidity 50.0 270 > th dose independent rect. 3 3
315 580.73 atmosphere 995.0 270 > th dose independent rect. 3 3
316 580.73 atmosphere 1015.0 270 < th dose independent rect. 3 3
321 580.83 wind 9.0 270 < th dose independent rect. 7 19
337 585.56 wind 9.0 270 < th dose independent rect. 6 21
340 586.63 humidity 50.0 270 > th dose dependent rect. 2 5
342 587.27 humidity 50.0 270 > th dose dependent rect. 3 3
348 588.95 temperature 25.0 270 < th dose independent rect. 16 15
349 589.03 temperature 10.0 270 > th dose dependent rect. 2 5
360 590.92 precipitation 0.1 270 < th dose independent rect. 7 19
361 590.92 precipitation 0.1 270 < th dose dependent rect. 7 19
384 595.07 wind 9.0 270 < th dose dependent rect. 3 3
394 597.75 precipitation 0.1 270 < th dose independent rect. 6 21
395 597.75 precipitation 0.1 270 < th dose dependent rect. 6 21
396 597.99 wind 9.0 270 < th dose dependent rect. 2 5
451 604.82 temperature 30.0 270 < th dose dependent rect. 15 16
478 608.37 wind 9.0 90 < th dose independent rect. 9 18
547 613.22 atmosphere 995.0 270 > th dose independent rect. 7 19
609 618.53 wind 1.0 270 > th dose independent rect. 7 19
611 618.88 atmosphere 995.0 270 > th dose dependent rect. 3 3
613 619.16 precipitation 0.1 90 < th dose independent rect. 9 18
614 619.16 precipitation 0.1 90 < th dose dependent rect. 9 18
632 622.83 atmosphere 995.0 90 > th dose independent rect. 9 18
674 627.51 temperature 10.0 270 > th dose dependent rect. 20 16
681 628.74 atmosphere 995.0 270 > th dose independent rect. 6 21
687 629.47 wind 1.0 270 > th dose independent rect. 2 5
691 629.92 radiation 10.0 270 < th dose independent rect. 18 9
709 631.46 wind 9.0 270 < th dose independent rect. 18 9
713 631.68 humidity 50.0 270 > th dose independent rect. 18 9
717 631.68 temperature 10.0 270 > th dose independent rect. 3 15
718 631.68 atmosphere 1015.0 270 < th dose independent rect. 3 15
719 631.75 precipitation 0.1 270 < th dose independent rect. 3 15
720 631.75 precipitation 0.1 270 < th dose dependent rect. 3 15
733 631.97 radiation 40.0 270 < th dose dependent rect. 18 9
805 636.81 atmosphere 995.0 270 > th dose independent rect. 18 9
812 637.25 atmosphere 995.0 270 > th dose dependent rect. 2 5
813 637.27 wind 9.0 270 < th dose independent rect. 2 16
828 639.01 atmosphere 1015.0 270 < th dose independent rect. 21 15
834 639.37 precipitation 0.1 270 < th dose independent rect. 7 7
835 639.37 precipitation 0.1 270 < th dose dependent rect. 7 7
836 639.39 temperature 10.0 270 > th dose independent rect. 7 7
837 639.39 atmosphere 995.0 270 > th dose independent rect. 7 7
838 639.39 atmosphere 1015.0 270 < th dose independent rect. 7 7
839 639.39 temperature 10.0 270 > th dose independent rect. 14 17
848 640.71 precipitation 0.1 270 < th dose independent rect. 18 8
849 640.71 precipitation 0.1 270 < th dose dependent rect. 18 8
852 640.88 wind 9.0 270 < th dose independent rect. 7 7
863 641.13 wind 9.0 270 < th dose independent rect. 14 17
878 641.74 precipitation 0.1 270 < th dose independent rect. 14 17
879 641.74 precipitation 0.1 270 < th dose dependent rect. 14 17
897 643.43 wind 1.0 270 > th dose independent rect. 3 3
986 648.63 radiation 40.0 270 < th dose independent rect. 14 17