BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0592500 Os03g0592500|AK066762
(263 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0592500 Similar to Photosystem II type II chlorophyll ... 538 e-153
Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast... 407 e-114
Os09g0346500 Similar to Chlorophyll a-b binding protein, ch... 407 e-114
Os01g0720500 Similar to Type I chlorophyll a/b-binding prot... 397 e-111
AK058312 367 e-102
Os07g0562700 Similar to Type III chlorophyll a/b-binding pr... 362 e-100
Os09g0296800 Chlorophyll A-B binding protein family protein 200 9e-52
Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment) 196 1e-50
Os06g0320500 Similar to Light-harvesting complex I (Fragment) 140 1e-33
AK060800 140 1e-33
Os07g0577600 Similar to Type II chlorophyll a/b binding pro... 137 7e-33
Os02g0764500 Similar to Lhca5 protein 122 3e-28
Os09g0439500 Similar to Type II chlorophyll a/b binding pro... 119 2e-27
Os08g0435900 Similar to LHC I type IV chlorophyll binding p... 112 3e-25
Os07g0558400 Similar to Chlorophyll a/b-binding protein CP2... 102 3e-22
Os04g0457000 Similar to Chlorophyll a/b-binding protein CP2... 86 2e-17
Os02g0197600 Similar to PSI type III chlorophyll a/b-bindin... 80 2e-15
D85512 76 2e-14
>Os03g0592500 Similar to Photosystem II type II chlorophyll a/b binding protein
(Fragment)
Length = 263
Score = 538 bits (1385), Expect = e-153, Method: Compositional matrix adjust.
Identities = 263/263 (100%), Positives = 263/263 (100%)
Query: 1 MAASALHQTTSFLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFS 60
MAASALHQTTSFLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFS
Sbjct: 1 MAASALHQTTSFLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFS 60
Query: 61 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNG 120
EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNG
Sbjct: 61 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNG 120
Query: 121 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLG 180
VKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLG
Sbjct: 121 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLG 180
Query: 181 EGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 240
EGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL
Sbjct: 181 EGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 240
Query: 241 FDHVADPVANNAWAYATNFVPGK 263
FDHVADPVANNAWAYATNFVPGK
Sbjct: 241 FDHVADPVANNAWAYATNFVPGK 263
>Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast precursor (LHCII
type I CAB-2) (LHCP)
Length = 261
Score = 407 bits (1047), Expect = e-114, Method: Compositional matrix adjust.
Identities = 196/237 (82%), Positives = 215/237 (90%), Gaps = 4/237 (1%)
Query: 31 GRITMRRTVK----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 86
GRITMR++ +A S WYG DR YLGP S + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 25 GRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADP 84
Query: 87 ETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 146
ETFA+NRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGN
Sbjct: 85 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGN 144
Query: 147 PNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAE 206
P+L+HAQSILAIWAVQVVLMG VEGYR+ GGPLGE +D +YPGG+FDPLGLADDP+ FAE
Sbjct: 145 PSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAE 204
Query: 207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 205 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261
>Os09g0346500 Similar to Chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP)
Length = 265
Score = 407 bits (1046), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/237 (83%), Positives = 214/237 (90%), Gaps = 5/237 (2%)
Query: 32 RITMRRTV-KSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 86
RITMR+T K P S WYG DR YLGP S + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 29 RITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADP 88
Query: 87 ETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 146
ETFA+NRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGN
Sbjct: 89 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGN 148
Query: 147 PNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAE 206
P+L+HAQSILAIWAVQVVLMG VEGYR+ GGPLGE +D +YPGGAFDPLGLADDP+ FAE
Sbjct: 149 PSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAE 208
Query: 207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
>Os01g0720500 Similar to Type I chlorophyll a/b-binding protein b (Fragment)
Length = 265
Score = 397 bits (1019), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/238 (80%), Positives = 210/238 (88%), Gaps = 5/238 (2%)
Query: 31 GRITMRRTVKSAPQ-----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSAD 85
GR+TMR++ S WYG DR YLGP S + PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 28 GRVTMRKSAAKPKPAAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSAD 87
Query: 86 PETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLG 145
PETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLG
Sbjct: 88 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLG 147
Query: 146 NPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFA 205
NP+L+HAQSILAIW QVVLMG VEGYRV GGPLGE +D +YPGG+FDPLGLADDP+ FA
Sbjct: 148 NPSLIHAQSILAIWGCQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 207
Query: 206 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263
ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
>AK058312
Length = 266
Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/265 (72%), Positives = 210/265 (79%), Gaps = 12/265 (4%)
Query: 3 ASALHQTTSFLGTAPRRDELVRRVGDSG-GRITMRRTVKSAPQSIWYGPDRPKYLGPFSE 61
+ L T FLG + VR + + GRITM + +WYGPDR KYLGPFS
Sbjct: 10 SRVLAAKTPFLGHPRPSNAPVRDIAAAATGRITMSK-------ELWYGPDRVKYLGPFSA 62
Query: 62 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-NG 120
QTPSYL GEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 63 QTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVR 122
Query: 121 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP-L 179
V F E VWFKAGAQIFS+GGLDYLGNPNLVHAQSILA+ QVVLMG VEGYR+ G P +
Sbjct: 123 VDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLPGV 182
Query: 180 GEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 238
G+G D +YPGG FDPLGLADDP TFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 183 GDGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 241
Query: 239 NLFDHVADPVANNAWAYATNFVPGK 263
NL DH+ADPV NNAWAYATNFVPGK
Sbjct: 242 NLLDHLADPVNNNAWAYATNFVPGK 266
>Os07g0562700 Similar to Type III chlorophyll a/b-binding protein (Fragment)
Length = 266
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/265 (71%), Positives = 207/265 (78%), Gaps = 12/265 (4%)
Query: 3 ASALHQTTSFLGTAPRRDELVRRVGDSG-GRITMRRTVKSAPQSIWYGPDRPKYLGPFSE 61
+ L T FLG + VR + + GRITM + +WYGPDR KYLGPFS
Sbjct: 10 SRVLAAKTPFLGHPRPSNAPVRDIAAAATGRITMSK-------ELWYGPDRVKYLGPFSA 62
Query: 62 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-NG 120
QTPSYL GEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 63 QTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVR 122
Query: 121 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP-L 179
V F E VWFKAGAQIFS+GGLDYLGNPNLVHAQSILA+ QVVLMG VEGYR+ G P +
Sbjct: 123 VDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLPGV 182
Query: 180 GEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 238
G+G D +YPGG FDPLGLADDP TFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 183 GDGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 241
Query: 239 NLFDHVADPVANNAWAYATNFVPGK 263
NL DH+ADPVANNAW YAT F PG
Sbjct: 242 NLLDHLADPVANNAWVYATKFTPGS 266
>Os09g0296800 Chlorophyll A-B binding protein family protein
Length = 321
Score = 200 bits (508), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 114/225 (50%), Positives = 143/225 (63%), Gaps = 12/225 (5%)
Query: 37 RTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELE 96
R ++A S WYG +RP++LGP + P++LTGE+PGDYG+D AGL DP FA E
Sbjct: 93 RQARTA--SSWYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFE 150
Query: 97 VIHSRWAMLGALGCVFPEILSKNG-VKFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQ 153
++H RWAML ALG V PE+L G V F E VW+K G LDYLG P + Q
Sbjct: 151 ILHCRWAMLAALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQ 210
Query: 154 SILAIWAVQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDPLGLADDPDTFAE 206
++ I Q +LM E R G PLG L D YPGGA FDPLGL+ DP F +
Sbjct: 211 GVIVIAICQALLMVGPEYARYCGIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFED 270
Query: 207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251
LKVKE+KNGRLAM + GF++QA VTGKGPI+NL +H++DP+ NN
Sbjct: 271 LKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNN 315
>Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment)
Length = 283
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/210 (54%), Positives = 140/210 (66%), Gaps = 11/210 (5%)
Query: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRW 102
WYGPDR P+ L SE P YL GE PGDYG+D GLS PE F++ + E+IH+RW
Sbjct: 65 WYGPDRRIFLPEGLLDRSE-VPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARW 123
Query: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 161
AMLGA G + PE +K G G EAVWFK GA + L+Y GN ++ ++ A
Sbjct: 124 AMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LIVAVAA 180
Query: 162 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFS 221
+VVL+G E YR+ G E DK++PGG FDPLGLA DPD A LKVKE+KNGRLAMFS
Sbjct: 181 EVVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFS 238
Query: 222 MFGFFVQAIVTGKGPIENLFDHVADPVANN 251
M GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 239 MLGFFIQAYVTGEGPVENLSKHLSDPFGNN 268
>Os06g0320500 Similar to Light-harvesting complex I (Fragment)
Length = 241
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 128/259 (49%), Gaps = 38/259 (14%)
Query: 1 MAASALHQTT-----SFLGTAPRRDEL-VRRVGDSGGRITMRRTVKSAPQSIWYGPDRPK 54
MA S L + S L + R L V + GR+TM S + P +P+
Sbjct: 1 MATSGLRSCSAVGVPSLLAPSSNRSRLPVCAYATTSGRVTM---------SAEWMPGQPR 51
Query: 55 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 114
P++L G PGD+G+D GL+ PE F R +E EV H RWAML G + PE
Sbjct: 52 ---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPE 102
Query: 115 ILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR 173
L G W +A GG YLGNP V ++ I ++ V + F E R
Sbjct: 103 AL-------GLGNWVQAQEWAAEPGGQATYLGNP--VPWGTLPTILVIEFVAIAFAEHQR 153
Query: 174 VGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVT 232
+ K YPGGAFDPLG + DP F E K+KE+KNGRLAM + GF V Q+
Sbjct: 154 TMEK---DPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 210
Query: 233 GKGPIENLFDHVADPVANN 251
G GP+ENL H++DP NN
Sbjct: 211 GTGPLENLASHLSDPWHNN 229
>AK060800
Length = 241
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 128/259 (49%), Gaps = 38/259 (14%)
Query: 1 MAASALHQTT-----SFLGTAPRRDEL-VRRVGDSGGRITMRRTVKSAPQSIWYGPDRPK 54
MA S L + S L + R L V + GR+TM S + P +P+
Sbjct: 1 MATSGLRSCSAVGVPSLLAPSSNRSRLPVCAYATTSGRVTM---------SAEWMPGQPR 51
Query: 55 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 114
P++L G PGD+G+D GL+ PE F R +E EV H RWAML G + PE
Sbjct: 52 ---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPE 102
Query: 115 ILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR 173
L G W +A GG YLGNP V ++ I ++ V + F E R
Sbjct: 103 AL-------GLGNWVQAQEWAAEPGGQATYLGNP--VPWGTLPTILVIEFVAIAFAEHQR 153
Query: 174 VGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVT 232
+ K YPGGAFDPLG + DP F E K+KE+KNGRLAM + GF V Q+
Sbjct: 154 TMEK---DPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 210
Query: 233 GKGPIENLFDHVADPVANN 251
G GP+ENL H++DP NN
Sbjct: 211 GTGPLENLASHLSDPWHNN 229
>Os07g0577600 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 263
Score = 137 bits (345), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 131/257 (50%), Gaps = 43/257 (16%)
Query: 8 QTTSFLGTAPRRDELV-RRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSY 66
+ +SFLG A R L+ R+ S R + V++A PDRP + P +
Sbjct: 21 RASSFLGGAGRSGRLLLRQAESSSARASF--AVRAA------APDRPIWFP--GSTPPPW 70
Query: 67 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEA 126
L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L+K G+
Sbjct: 71 LDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI-LNTP 129
Query: 127 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------VGGG 177
W+ AG Q + ++ ++++L+G+ EG R V
Sbjct: 130 SWYTAGEQ---------------QYFTDTTTLFIIELILIGWAEGRRWADIIKPGCVNTD 174
Query: 178 PLG-----EGLDKVYPGGA-FDPLGLAD-DPDTFAELKVKELKNGRLAMFSMFGFFVQAI 230
P+ G D YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + QA
Sbjct: 175 PIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAE 234
Query: 231 VTGKGPIENLFDHVADP 247
TG GPI+NLF H+ADP
Sbjct: 235 YTGTGPIDNLFAHLADP 251
>Os02g0764500 Similar to Lhca5 protein
Length = 261
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 108/205 (52%), Gaps = 32/205 (15%)
Query: 64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 123
P +L G PGD+G+D GL +P + E++H R+AM G G + +++ +G+
Sbjct: 64 PPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGIN- 122
Query: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR----VGGGPL 179
VWF+AGA F D+ + A++ VQ++LMGF E R + G
Sbjct: 123 NLPVWFEAGATKF-----DF---------ANTTALFFVQLLLMGFAETKRYMDFINPGSQ 168
Query: 180 GE------------GLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFF 226
E G YPGG F+PLGLA D + E K+KE+KNGRLAM +M GF
Sbjct: 169 AEEGTFLGIEAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFI 228
Query: 227 VQAIVTGKGPIENLFDHVADPVANN 251
VQA VT GPI+NL H++DP N
Sbjct: 229 VQASVTHVGPIDNLLTHLSDPFNKN 253
>Os09g0439500 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 264
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 112/227 (49%), Gaps = 36/227 (15%)
Query: 49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGAL 108
GPDRP + P +L G PGD+G+D GL +DPE + E++HSRWAML
Sbjct: 56 GPDRPLWFP--GSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVA 113
Query: 109 GCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGF 168
G + PE+L K G + W AGA+ DY +P ++ Q+ LMG+
Sbjct: 114 GILVPEVLEKWGF-MEDYSWIDAGAR-------DYFADP--------WTLFVSQMALMGW 157
Query: 169 VEGYRVGGGPLGEGL---------------DKVYPGGAFDPLGL--ADDPDTFAELKVKE 211
EG R L G D YPGG + G P+ L+ KE
Sbjct: 158 AEGRRWADY-LNPGCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKE 216
Query: 212 LKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATN 258
+KNGRLAM + GF+ QA+ TG+GPI+NL H+ADP N ++ T+
Sbjct: 217 IKNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTS 263
>Os08g0435900 Similar to LHC I type IV chlorophyll binding protein (Fragment)
Length = 244
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 113/243 (46%), Gaps = 48/243 (19%)
Query: 26 VGDSGGRI----TMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAG 81
+G S R+ T RR V++ + W P P +P+YL G PGD G+D G
Sbjct: 24 LGQSSTRLARAPTTRRNVRAEAKGEWL-PGLP---------SPTYLNGSLPGDNGFDPLG 73
Query: 82 LSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGL 141
L+ DPE + E+++ RWAMLG G + PE+L+K G+ W+ AG +
Sbjct: 74 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGL-IDAPQWYDAGKATY----- 127
Query: 142 DYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------VGGGPLGEGL-----DKVY 187
S ++ ++ +L +VE R V P+ + + Y
Sbjct: 128 ----------FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSYSLPPHECGY 177
Query: 188 PGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247
PG F+PL + E K KEL NGRLAM + GF VQ VT KGP +NL H++DP
Sbjct: 178 PGSVFNPLNF----EPTLEAKEKELANGRLAMLAFLGFLVQHNVTQKGPFDNLLQHLSDP 233
Query: 248 VAN 250
N
Sbjct: 234 WHN 236
>Os07g0558400 Similar to Chlorophyll a/b-binding protein CP29 precursor
Length = 290
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 95/162 (58%), Gaps = 21/162 (12%)
Query: 91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLV 150
R RE E+IH RWAML LG + E L+ GV W AG +G YLG P L
Sbjct: 134 RFRECELIHGRWAMLATLGALSVEWLT--GV-----TWQDAGKVELVDGS-SYLGQP-LP 184
Query: 151 HAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGA-FDPLGLADDPDTFAE 206
+ S L IW ++V+++G++E R LD ++YPGG+ FDPLGLA DP+
Sbjct: 185 FSISTL-IW-IEVLVIGYIEFQR------NAELDPEKRLYPGGSYFDPLGLASDPEKKER 236
Query: 207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248
L++ E+K+ RLAM + GF VQA TGKGP+ N H++DP+
Sbjct: 237 LQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 278
>Os04g0457000 Similar to Chlorophyll a/b-binding protein CP24, photosystem II
(Fragment)
Length = 252
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 109/261 (41%), Gaps = 57/261 (21%)
Query: 10 TSFLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTG 69
T FLG + L VG +G + RR + + + W P + P +L G
Sbjct: 17 TPFLGA---KRALANAVGVAGAKPAPRRALVVSAKKSWI----PAFKSDAEFINPPWLDG 69
Query: 70 EFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWF 129
PGD+G+D GL DP RE E+IH RWAM LG G + WF
Sbjct: 70 SLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGVPWF 122
Query: 130 KAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGG--GPLGEGLD--- 184
+AGAQ P + S ++ Q++LMG+VE R P + ++
Sbjct: 123 EAGAQ------------PEAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQAVEWAT 170
Query: 185 ---------------KVYPGGAF-DPLGLA---------DDPDTFAELKVKELKNGRLAM 219
+ YPGG F DPLGL D D LK+ E+K+ RLAM
Sbjct: 171 PWSRTAENFSNATGEQGYPGGKFFDPLGLGGETRDGVYIPDTDKLDRLKLAEIKHARLAM 230
Query: 220 FSMFGFFVQAIVTGKGPIENL 240
+M F+ +A GK P+ L
Sbjct: 231 LAMLIFYFEA-GQGKTPLGAL 250
>Os02g0197600 Similar to PSI type III chlorophyll a/b-binding protein
Length = 180
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 54/85 (63%), Gaps = 8/85 (9%)
Query: 169 VEGYRVGGGPLGEGLDKVYPGGA-FDPLGLADDPDT-FAELKVKELKNGRLAMFSMFGFF 226
+E Y G G + YPGG F+PLG + ELK+KE+KNGRLAM + GF
Sbjct: 94 LEKYLAGSG------EPAYPGGPLFNPLGFGTKSEAEMKELKLKEIKNGRLAMLAFLGFS 147
Query: 227 VQAIVTGKGPIENLFDHVADPVANN 251
VQA+ TG GP++NL DH+ADPV NN
Sbjct: 148 VQALFTGVGPVQNLLDHLADPVHNN 172
>D85512
Length = 124
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 40/47 (85%)
Query: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251
A LK+KE+KNGRLAMFSM GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 63 ALLKLKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNN 109
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.139 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,512,645
Number of extensions: 486712
Number of successful extensions: 1021
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 975
Number of HSP's successfully gapped: 18
Length of query: 263
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 164
Effective length of database: 11,866,615
Effective search space: 1946124860
Effective search space used: 1946124860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)