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Os09g0346500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chlorophyll a-b binding protein, chloroplast precursor (LHCII type I CAB) (LHCP).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.1 (0.0476) R2 : 0.93
β1 : -1.6 (0.175) R2dD : 0.0139 R2D : 0.00463
β2 : 1.1 (0.233) R2dC : 0.0139 R2C : 0.179
β3 : -8.35 (0.26) R2dE : 0.676 R2E : 0.865
β4 : 4.22 (0.437) R2dD*C : 0.0111 R2D*C : 0.00483
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.33 (0.102) R2dN8 : 0.036 R2N8 : 0.037
σ : 0.89
deviance : 364.94
__
_____
C
peak time of C : 12.9
E
wheather : temperature
threshold : 7.315
memory length : 190
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.3
open length of G : 8.68

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
369.44 0.903 14.1 -1.44 0.837 -8.93 6.36 4.59 -1.38 12.8 9.287 241 18.2 8.34
364.94 0.89 14.1 -1.6 1.1 -8.35 4.22 -- -1.33 12.9 7.315 190 18.3 8.68
388.14 0.918 14.1 -1.59 1.61 -8.19 -- -2.96 -1.36 11.6 10.56 186 18.5 8.7
409.29 0.942 14.1 -1.38 1.44 -8.39 -- -- -1.31 12.1 10.72 181 18.5 8.7
386.26 0.915 14.1 -1.61 -- -9.47 -- -3.6 -1.43 -- 6.934 192 18.4 8.78
1142.33 1.58 14 -1.97 7.69 -- 4.35 -- -1.7 12.2 -- -- -- --
1224.16 1.64 14 -1.8 7.67 -- -- -- -1.68 12.2 -- -- -- --
417.91 0.952 14.1 -1.41 -- -9.48 -- -- -1.33 -- 7.375 191 18.3 8.83
457.37 0.996 14 -- 1.47 -8.61 -- -- -1.15 11.9 11.88 178 18.6 8.7
4930.54 3.28 14.2 -2.05 -- -- -- -- -1.8 -- -- -- -- --
1309.74 1.69 14 -- 7.7 -- -- -- -1.48 12.2 -- -- -- --
467.65 1.01 14.1 -- -- -9.65 -- -- -1.21 -- 8.304 200 18.3 8.92
5041.51 3.31 14.1 -- -- -- -- -- -1.57 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 393.97 temperature 10.0 270 > th dose dependent rect. 18 8
4 443.11 temperature 15.0 90 > th dose dependent rect. 20 8
9 485.70 temperature 15.0 10 > th dose dependent rect. 20 9
26 566.93 temperature 20.0 270 > th dose independent rect. 18 8
31 573.18 temperature 20.0 90 > th dose independent rect. 20 8
38 586.54 temperature 20.0 10 > th dose independent rect. 20 9
42 588.69 radiation 10.0 270 < th dose independent rect. 17 10
46 592.71 radiation 20.0 270 < th dose dependent rect. 17 10
47 592.74 humidity 50.0 270 > th dose independent rect. 17 10
57 604.40 temperature 15.0 270 > th dose independent rect. 17 10
60 607.45 precipitation 0.1 270 < th dose independent rect. 3 14
61 607.45 precipitation 0.1 270 < th dose dependent rect. 3 14
64 610.06 wind 9.0 270 < th dose independent rect. 17 10
69 610.33 temperature 10.0 270 > th dose independent rect. 3 14
70 610.33 atmosphere 1015.0 270 < th dose independent rect. 3 14
73 615.08 wind 9.0 270 < th dose independent rect. 3 14
89 629.81 precipitation 0.1 270 < th dose independent rect. 17 10
90 629.81 precipitation 0.1 270 < th dose dependent rect. 17 10
91 630.33 radiation 1.0 30 < th dose dependent sin 12 NA
122 641.66 atmosphere 995.0 270 > th dose independent rect. 17 10
136 647.11 atmosphere 1015.0 270 < th dose independent rect. 7 19
140 648.79 temperature 20.0 90 > th dose independent rect. 9 18
145 649.61 radiation 10.0 270 < th dose independent rect. 3 3
146 650.23 temperature 30.0 270 < th dose independent rect. 18 9
150 651.97 temperature 15.0 270 > th dose independent rect. 7 19
162 655.69 atmosphere 1010.0 270 < th dose independent rect. 18 8
167 658.59 wind 7.0 270 < th dose independent rect. 3 3
174 659.27 temperature 10.0 270 > th dose independent rect. 3 3
176 659.27 temperature 30.0 270 < th dose independent rect. 3 3
177 659.27 humidity 50.0 270 > th dose independent rect. 3 3
180 659.27 atmosphere 995.0 270 > th dose independent rect. 3 3
181 659.27 atmosphere 1015.0 270 < th dose independent rect. 3 3
185 659.27 temperature 10.0 270 > th dose independent rect. 6 21
186 659.43 precipitation 0.1 270 < th dose independent rect. 3 3
187 659.43 precipitation 0.1 270 < th dose dependent rect. 3 3
188 659.48 radiation 40.0 270 < th dose dependent rect. 3 3
192 659.71 temperature 10.0 270 > th dose dependent rect. 3 3
193 659.88 temperature 10.0 270 > th dose independent rect. 7 6
194 659.88 atmosphere 995.0 270 > th dose independent rect. 7 6
195 659.88 atmosphere 1015.0 270 < th dose independent rect. 7 6
196 659.88 temperature 10.0 270 > th dose independent rect. 13 18
197 660.15 radiation 20.0 270 < th dose independent rect. 2 5
199 660.52 precipitation 0.1 270 < th dose independent rect. 7 6
200 660.52 precipitation 0.1 270 < th dose dependent rect. 7 6
202 660.96 humidity 70.0 270 > th dose independent rect. 2 5
226 661.96 wind 9.0 270 < th dose independent rect. 13 18
230 662.65 wind 7.0 270 < th dose independent rect. 2 5
232 662.65 temperature 10.0 270 > th dose independent rect. 2 5
234 662.65 temperature 30.0 270 < th dose independent rect. 2 5
235 662.65 humidity 50.0 270 > th dose independent rect. 2 5
237 662.65 atmosphere 995.0 270 > th dose independent rect. 2 5
238 662.65 atmosphere 1015.0 270 < th dose independent rect. 2 5
241 662.71 precipitation 0.1 270 < th dose independent rect. 2 5
242 662.71 precipitation 0.1 270 < th dose dependent rect. 2 5
243 662.87 precipitation 0.1 270 < th dose independent rect. 13 18
244 662.87 precipitation 0.1 270 < th dose dependent rect. 13 18
247 663.58 wind 9.0 270 < th dose independent rect. 7 6
253 665.54 humidity 50.0 270 > th dose dependent rect. 3 3
263 667.51 wind 9.0 270 < th dose independent rect. 6 21
266 667.72 radiation 40.0 270 < th dose dependent rect. 2 5
267 667.74 wind 9.0 270 < th dose independent rect. 7 19
268 667.99 atmosphere 995.0 270 > th dose independent rect. 3 14
271 669.25 atmosphere 1015.0 270 < th dose independent rect. 6 21
278 671.30 atmosphere 1010.0 10 < th dose independent rect. 20 9
287 671.85 humidity 50.0 270 > th dose dependent rect. 2 5
291 672.61 radiation 1.0 30 < th dose independent sin 12 NA
296 673.23 humidity 50.0 270 > th dose independent rect. 7 19
305 674.95 humidity 50.0 270 > th dose independent rect. 7 6
320 676.52 temperature 10.0 270 > th dose dependent rect. 2 5
330 677.79 radiation 1.0 30 > th dose independent sin 12 NA
333 678.55 wind 9.0 270 < th dose dependent rect. 3 3
334 678.80 radiation 1.0 270 > th dose independent rect. 7 6
336 679.46 humidity 50.0 270 > th dose independent rect. 6 21
351 683.42 radiation 1.0 10 < th dose dependent rect. 20 9
352 683.44 precipitation 0.1 270 < th dose independent rect. 7 19
353 683.44 precipitation 0.1 270 < th dose dependent rect. 7 19
360 684.71 atmosphere 995.0 270 > th dose independent rect. 13 18
364 685.31 wind 9.0 270 < th dose dependent rect. 2 5
376 687.47 precipitation 0.1 270 < th dose independent rect. 6 21
377 687.47 precipitation 0.1 270 < th dose dependent rect. 6 21
410 689.89 wind 9.0 10 < th dose independent rect. 5 15
414 690.17 precipitation 0.1 10 < th dose independent rect. 5 15
416 690.17 precipitation 0.1 10 < th dose dependent rect. 5 15
418 690.26 wind 1.0 270 > th dose independent rect. 18 9
422 690.43 temperature 30.0 10 < th dose independent rect. 20 9
423 690.43 humidity 50.0 10 > th dose independent rect. 20 9
426 690.43 atmosphere 995.0 10 > th dose independent rect. 20 9
427 690.43 radiation 1.0 10 < th dose independent rect. 20 9
432 690.43 temperature 10.0 10 > th dose independent rect. 5 15
434 690.43 atmosphere 1015.0 10 < th dose independent rect. 5 15
448 690.82 wind 9.0 10 < th dose independent rect. 20 9
453 690.92 wind 1.0 270 > th dose independent rect. 7 6
480 695.02 atmosphere 1015.0 90 < th dose independent rect. 9 19
538 701.94 radiation 1.0 10 < th dose dependent rect. 20 16
550 702.75 precipitation 0.1 10 < th dose independent rect. 20 9
551 702.75 precipitation 0.1 10 < th dose dependent rect. 20 9
568 705.92 radiation 1.0 30 > th dose independent rect. 16 17
608 708.17 radiation 40.0 270 < th dose independent rect. 14 17
621 709.29 atmosphere 995.0 270 > th dose independent rect. 7 19
662 714.23 wind 9.0 90 < th dose independent rect. 9 19
667 714.60 radiation 1.0 270 < th dose dependent rect. 6 21
672 715.22 radiation 1.0 30 > th dose independent rect. 14 19
677 715.65 wind 9.0 10 < th dose dependent rect. 5 4
681 715.93 atmosphere 1015.0 10 < th dose independent rect. 9 20
683 716.21 wind 1.0 270 > th dose independent rect. 7 19
739 718.09 radiation 1.0 270 < th dose independent rect. 6 21
775 720.99 atmosphere 995.0 270 > th dose dependent rect. 3 3
800 723.35 atmosphere 995.0 90 > th dose independent rect. 9 19
833 724.66 atmosphere 995.0 270 > th dose independent rect. 6 21
838 725.15 radiation 30.0 10 < th dose independent rect. 5 4
852 725.95 wind 5.0 10 < th dose independent rect. 5 4
854 726.45 temperature 10.0 10 > th dose dependent rect. 5 4
859 726.90 temperature 10.0 1440 > th dose independent rect. 5 5
862 726.90 atmosphere 995.0 1440 > th dose independent rect. 5 5
863 726.90 atmosphere 1015.0 1440 < th dose independent rect. 5 5
865 726.90 temperature 10.0 1440 > th dose independent rect. 10 19
869 726.95 temperature 10.0 1440 > th dose independent rect. 21 8
872 726.95 temperature 30.0 1440 < th dose independent rect. 21 8
876 726.95 humidity 50.0 1440 > th dose independent rect. 21 8
882 726.95 atmosphere 995.0 1440 > th dose independent rect. 21 8
883 726.95 radiation 20.0 1440 < th dose independent rect. 21 8
895 726.95 temperature 10.0 1440 > th dose independent rect. 5 16
912 727.89 radiation 40.0 30 < th dose independent rect. 14 19
914 728.05 humidity 70.0 10 > th dose independent rect. 18 11
918 728.58 wind 9.0 30 < th dose independent rect. 14 19
936 729.12 precipitation 0.1 10 < th dose independent rect. 5 4
937 729.12 precipitation 0.1 10 < th dose dependent rect. 5 4
938 729.20 radiation 40.0 10 < th dose dependent rect. 5 4
948 729.68 temperature 10.0 10 > th dose independent rect. 5 4
950 729.68 temperature 30.0 10 < th dose independent rect. 5 4
951 729.68 humidity 50.0 10 > th dose independent rect. 5 4
953 729.68 atmosphere 995.0 10 > th dose independent rect. 5 4
954 729.68 atmosphere 1015.0 10 < th dose independent rect. 5 4
973 731.31 temperature 10.0 10 > th dose independent rect. 9 5
975 731.31 atmosphere 995.0 10 > th dose independent rect. 9 5
976 731.31 atmosphere 1015.0 10 < th dose independent rect. 9 5
977 731.31 precipitation 0.1 10 < th dose independent rect. 9 5
978 731.31 temperature 10.0 10 > th dose independent rect. 14 19
979 731.31 precipitation 0.1 10 < th dose dependent rect. 9 5
996 732.14 temperature 10.0 1440 > th dose independent rect. 10 5
999 732.14 temperature 10.0 1440 > th dose independent rect. 15 19