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Os08g0435900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to LHC I type IV chlorophyll binding protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.4 (0.0411) R2 : 0.909
β1 : -1.78 (0.151) R2dD : 0.0296 R2D : 0.0222
β2 : -- (--) R2dC : -- R2C : --
β3 : -7.59 (0.117) R2dE : 0.835 R2E : 0.857
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.01 (0.0879) R2dN8 : 0.0339 R2N8 : 0.0337
σ : 0.768
deviance : 271.92
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 11.38
memory length : 191
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.4
open length of G : 7.16

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
244.87 0.735 15.4 -1.87 0.132 -7.42 3.5 0.86 -1.08 13.8 10.4 237 19 7.27
235.08 0.714 15.4 -1.89 0.272 -7.17 3.33 -- -1.01 14.5 10.4 190 19.3 7.28
249.56 0.736 15.4 -1.89 0.452 -6.92 -- -3.31 -1.08 14 10.27 179 19.5 7.2
264.77 0.758 15.4 -1.75 0.762 -7.04 -- -- -0.955 13.8 12.68 178 19.6 7.02
255.09 0.744 15.5 -1.94 -- -7.2 -- -3.01 -1.12 -- 9.621 179 19.5 7.23
927.65 1.43 15.4 -2.21 5.34 -- 3.62 -- -1.3 12.6 -- -- -- --
983.61 1.47 15.4 -2.07 5.33 -- -- -- -1.29 12.6 -- -- -- --
271.92 0.768 15.4 -1.78 -- -7.59 -- -- -1.01 -- 11.38 191 19.4 7.16
344.83 0.865 15.4 -- 0.777 -7.29 -- -- -0.729 13.7 13.73 186 19.5 6.98
2765.15 2.46 15.5 -2.26 -- -- -- -- -1.38 -- -- -- -- --
1097.09 1.55 15.4 -- 5.36 -- -- -- -1.05 12.6 -- -- -- --
353.21 0.875 15.4 -- -- -7.86 -- -- -0.751 -- 12.65 200 19.4 7.2
2900.25 2.51 15.5 -- -- -- -- -- -1.13 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 264.46 temperature 10.0 270 > th dose dependent rect. 19 7
30 376.46 temperature 20.0 90 > th dose independent rect. 20 7
49 415.99 atmosphere 1010.0 90 < th dose independent rect. 20 7
60 427.89 temperature 15.0 270 > th dose independent rect. 18 8
71 439.50 radiation 10.0 270 < th dose dependent rect. 18 8
72 439.93 radiation 10.0 270 < th dose independent rect. 18 8
79 441.12 humidity 60.0 270 > th dose independent rect. 18 8
87 441.43 temperature 10.0 270 > th dose independent rect. 2 16
88 441.43 atmosphere 1015.0 270 < th dose independent rect. 2 16
89 441.49 wind 9.0 270 < th dose independent rect. 18 8
90 442.58 wind 9.0 270 < th dose independent rect. 2 16
94 443.65 atmosphere 995.0 270 > th dose independent rect. 18 8
99 445.41 precipitation 0.1 270 < th dose independent rect. 2 16
100 445.41 precipitation 0.1 270 < th dose dependent rect. 2 16
101 445.49 wind 9.0 90 < th dose independent rect. 20 7
105 446.24 temperature 30.0 90 < th dose independent rect. 20 7
106 446.24 humidity 50.0 90 > th dose independent rect. 20 7
109 446.24 atmosphere 995.0 90 > th dose independent rect. 20 7
110 446.24 radiation 1.0 90 < th dose independent rect. 20 7
117 446.24 radiation 1.0 90 < th dose dependent rect. 20 7
123 447.37 temperature 15.0 270 > th dose independent rect. 7 18
125 448.00 precipitation 0.1 90 < th dose independent rect. 20 7
126 448.00 precipitation 0.1 90 < th dose dependent rect. 20 7
127 448.23 temperature 30.0 270 < th dose independent rect. 18 8
128 448.56 radiation 20.0 270 < th dose independent rect. 1 6
129 449.00 humidity 70.0 270 > th dose independent rect. 1 6
130 449.10 wind 7.0 270 < th dose independent rect. 1 6
134 449.87 temperature 10.0 270 > th dose independent rect. 1 6
136 449.87 temperature 30.0 270 < th dose independent rect. 1 6
137 449.87 humidity 50.0 270 > th dose independent rect. 1 6
139 449.87 atmosphere 995.0 270 > th dose independent rect. 1 6
140 449.87 atmosphere 1015.0 270 < th dose independent rect. 1 6
143 450.01 precipitation 0.1 270 < th dose independent rect. 1 6
144 450.01 precipitation 0.1 270 < th dose dependent rect. 1 6
153 454.58 wind 9.0 270 < th dose independent rect. 7 18
154 455.13 precipitation 0.1 270 < th dose independent rect. 18 8
155 455.13 precipitation 0.1 270 < th dose dependent rect. 18 8
157 457.14 atmosphere 1015.0 270 < th dose independent rect. 7 18
158 457.37 radiation 40.0 270 < th dose dependent rect. 1 6
159 459.67 temperature 10.0 270 > th dose independent rect. 6 8
160 459.67 atmosphere 995.0 270 > th dose independent rect. 6 8
161 459.67 atmosphere 1015.0 270 < th dose independent rect. 6 8
162 459.67 temperature 10.0 270 > th dose independent rect. 14 16
163 459.88 precipitation 0.1 270 < th dose independent rect. 6 8
164 459.88 precipitation 0.1 270 < th dose dependent rect. 6 8
169 461.46 wind 9.0 270 < th dose independent rect. 14 16
182 461.80 temperature 10.0 270 > th dose dependent rect. 1 6
188 461.84 wind 1.0 270 > th dose independent rect. 18 8
189 461.85 humidity 50.0 270 > th dose dependent rect. 1 6
194 463.82 wind 9.0 270 < th dose independent rect. 6 8
197 464.60 radiation 40.0 270 < th dose independent rect. 14 16
201 465.50 precipitation 0.1 270 < th dose independent rect. 7 18
202 465.50 precipitation 0.1 270 < th dose dependent rect. 7 18
221 470.96 precipitation 0.1 270 < th dose independent rect. 14 16
222 470.96 precipitation 0.1 270 < th dose dependent rect. 14 16
246 475.33 wind 9.0 270 < th dose dependent rect. 1 6
301 478.50 atmosphere 995.0 90 > th dose independent rect. 3 17
338 483.22 wind 9.0 90 < th dose dependent rect. 20 7
341 483.70 wind 9.0 90 < th dose dependent rect. 3 6
382 488.47 atmosphere 995.0 270 > th dose independent rect. 7 18
392 489.97 wind 1.0 270 > th dose independent rect. 7 18
395 490.25 radiation 1.0 270 > th dose independent rect. 6 8
467 494.14 humidity 50.0 90 > th dose dependent rect. 20 7
471 494.34 radiation 1.0 270 < th dose dependent rect. 8 18
492 495.92 radiation 1.0 270 < th dose dependent rect. 6 20
535 497.54 temperature 15.0 270 > th dose independent rect. 20 16
622 504.49 radiation 1.0 270 < th dose dependent rect. 3 2
626 504.73 temperature 10.0 270 > th dose independent rect. 12 8
627 504.73 atmosphere 1015.0 270 < th dose independent rect. 12 8
629 504.73 atmosphere 995.0 270 > th dose independent rect. 20 16
630 504.78 radiation 1.0 270 < th dose independent rect. 3 2
640 505.51 humidity 50.0 270 > th dose independent rect. 6 8
649 505.70 wind 9.0 270 < th dose independent rect. 3 2
650 505.70 temperature 10.0 270 > th dose independent rect. 3 2
652 505.70 temperature 30.0 270 < th dose independent rect. 3 2
653 505.70 humidity 50.0 270 > th dose independent rect. 3 2
656 505.70 atmosphere 995.0 270 > th dose independent rect. 3 2
657 505.70 atmosphere 1010.0 270 < th dose independent rect. 3 2
662 505.70 temperature 10.0 270 > th dose independent rect. 5 22
675 506.61 wind 9.0 270 < th dose independent rect. 12 8
677 506.85 wind 9.0 270 < th dose independent rect. 20 16
679 506.95 precipitation 0.1 270 < th dose independent rect. 12 8
680 506.95 precipitation 0.1 270 < th dose dependent rect. 12 8
693 508.39 radiation 40.0 14400 < th dose dependent rect. 21 7
696 508.69 precipitation 0.1 270 < th dose independent rect. 3 2
697 508.69 precipitation 0.1 270 < th dose dependent rect. 3 2
698 508.74 humidity 50.0 270 > th dose dependent rect. 3 2
702 509.12 atmosphere 995.0 270 > th dose independent rect. 14 16
704 509.19 wind 1.0 270 > th dose independent rect. 12 8
712 509.71 temperature 10.0 1440 > th dose independent rect. 21 7
715 509.71 temperature 30.0 1440 < th dose independent rect. 21 7
719 509.71 humidity 50.0 1440 > th dose independent rect. 21 7
725 509.71 atmosphere 995.0 1440 > th dose independent rect. 21 7
726 509.71 radiation 1.0 1440 < th dose independent rect. 21 7
746 509.71 temperature 10.0 1440 > th dose independent rect. 4 17
821 511.87 atmosphere 1015.0 270 < th dose independent rect. 20 16
828 512.60 precipitation 0.1 270 < th dose independent rect. 20 16
829 512.60 precipitation 0.1 270 < th dose dependent rect. 20 16
867 512.99 wind 1.0 270 > th dose independent rect. 1 6
874 513.42 temperature 15.0 10 > th dose independent rect. 9 18
878 513.56 humidity 50.0 270 > th dose independent rect. 7 18
996 517.28 atmosphere 995.0 90 > th dose independent rect. 9 18