BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0435900 Os08g0435900|AK060222
(244 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0435900 Similar to LHC I type IV chlorophyll binding p... 504 e-143
Os07g0577600 Similar to Type II chlorophyll a/b binding pro... 231 3e-61
Os02g0764500 Similar to Lhca5 protein 201 5e-52
Os09g0439500 Similar to Type II chlorophyll a/b binding pro... 197 4e-51
Os06g0320500 Similar to Light-harvesting complex I (Fragment) 155 3e-38
AK060800 155 3e-38
Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment) 118 5e-27
Os07g0558400 Similar to Chlorophyll a/b-binding protein CP2... 115 2e-26
Os03g0592500 Similar to Photosystem II type II chlorophyll ... 112 3e-25
Os09g0346500 Similar to Chlorophyll a-b binding protein, ch... 109 1e-24
Os09g0296800 Chlorophyll A-B binding protein family protein 109 2e-24
AK058312 109 2e-24
Os07g0562700 Similar to Type III chlorophyll a/b-binding pr... 108 3e-24
Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast... 107 1e-23
Os01g0720500 Similar to Type I chlorophyll a/b-binding prot... 105 3e-23
Os04g0457000 Similar to Chlorophyll a/b-binding protein CP2... 103 9e-23
Os02g0197600 Similar to PSI type III chlorophyll a/b-bindin... 77 1e-14
>Os08g0435900 Similar to LHC I type IV chlorophyll binding protein (Fragment)
Length = 244
Score = 504 bits (1297), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/244 (100%), Positives = 244/244 (100%)
Query: 1 MASVTARTPVAALRSSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPSPTYLN 60
MASVTARTPVAALRSSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPSPTYLN
Sbjct: 1 MASVTARTPVAALRSSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPSPTYLN 60
Query: 61 GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWY 120
GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWY
Sbjct: 61 GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWY 120
Query: 121 DAGKATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSYSLPPHECGYPGS 180
DAGKATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSYSLPPHECGYPGS
Sbjct: 121 DAGKATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSYSLPPHECGYPGS 180
Query: 181 VFNPLNFEPTLEAKEKELANGRLAMLAFLGFLVQHNVTQKGPFDNLLQHLSDPWHNTIIQ 240
VFNPLNFEPTLEAKEKELANGRLAMLAFLGFLVQHNVTQKGPFDNLLQHLSDPWHNTIIQ
Sbjct: 181 VFNPLNFEPTLEAKEKELANGRLAMLAFLGFLVQHNVTQKGPFDNLLQHLSDPWHNTIIQ 240
Query: 241 TLSG 244
TLSG
Sbjct: 241 TLSG 244
>Os07g0577600 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 263
Score = 231 bits (589), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/259 (48%), Positives = 158/259 (61%), Gaps = 16/259 (6%)
Query: 1 MASVTARTPVAALRSSASLKSTFLGQSST------RLARAPTTRRN--VRAEAKGE--WL 50
+ S ++ T A A+ S+FLG + R A + + R + VRA A W
Sbjct: 3 LVSASSSTTAVAALPGAARASSFLGGAGRSGRLLLRQAESSSARASFAVRAAAPDRPIWF 62
Query: 51 PGLPSPTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTK 110
PG P +L+GSLPGD GFDPLGL DPE+LRW VQAELV+ RWAMLG AG+ +PE LTK
Sbjct: 63 PGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTK 122
Query: 111 IGLIDAPQWYDAGKATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSYSL 170
IG+++ P WY AG+ YF ++TLF+IE IL + E RRW DI PGCVN DPIF + L
Sbjct: 123 IGILNTPSWYTAGEQQYFTDTTTLFIIELILIGWAEGRRWADIIKPGCVNTDPIFPNNKL 182
Query: 171 PPHECGYPGSV-FNPLNF-----EPTLEAKEKELANGRLAMLAFLGFLVQHNVTQKGPFD 224
+ GYPG + F+PL + E E + KE+ NGRLAMLA +G Q T GP D
Sbjct: 183 TGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPID 242
Query: 225 NLLQHLSDPWHNTIIQTLS 243
NL HL+DP H TI Q +
Sbjct: 243 NLFAHLADPGHATIFQAFT 261
>Os02g0764500 Similar to Lhca5 protein
Length = 261
Score = 201 bits (510), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/245 (46%), Positives = 156/245 (63%), Gaps = 17/245 (6%)
Query: 9 PVAAL-RSSASLKSTFLGQSSTRLARAPTTRRNVRAEA-KGEWLPGLPSPTYLNGSLPGD 66
PV AL RS A++ + QS P R VRA + WLPGL P +L+G+LPGD
Sbjct: 22 PVTALSRSMAAIPGHHVFQS-------PRARIAVRASTERATWLPGLDPPPHLDGTLPGD 74
Query: 67 NGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWYDAGKAT 126
GFDPLGL E+P NL+W+VQAELV+ R+AM GVAG+L +++ G+ + P W++AG
Sbjct: 75 FGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGINNLPVWFEAGATK 134
Query: 127 Y-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSY--SLPPHECGYPGS-VF 182
+ FA+++ LF ++ +L + E +R+ D NPG ++ F +L + GYPG +F
Sbjct: 135 FDFANTTALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLGIEAALAGSQPGYPGGPLF 194
Query: 183 NPL----NFEPTLEAKEKELANGRLAMLAFLGFLVQHNVTQKGPFDNLLQHLSDPWHNTI 238
NPL + E EAK KE+ NGRLAM+A LGF+VQ +VT GP DNLL HLSDP++ I
Sbjct: 195 NPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVGPIDNLLTHLSDPFNKNI 254
Query: 239 IQTLS 243
I TLS
Sbjct: 255 IHTLS 259
>Os09g0439500 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 264
Score = 197 bits (502), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 143/247 (57%), Gaps = 17/247 (6%)
Query: 14 RSSASLKSTFLGQSSTRLAR-----APTTRRNVRAEA------KGEWLPGLPSPTYLNGS 62
R A+L++ L + +AR A T+ V A + W PG P +L+GS
Sbjct: 16 RVRAALRAPTLPSQNAAVARMAGHRAGATKGGVSAVCEPLGPDRPLWFPGSSPPPWLDGS 75
Query: 63 LPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWYDA 122
LPGD GFDPLGL DPE LRWF QAEL++ RWAML VAG+L+PEVL K G ++ W DA
Sbjct: 76 LPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILVPEVLEKWGFMEDYSWIDA 135
Query: 123 GKATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSYSLPPHECGYPGSV- 181
G YFA TLFV + L + E RRW D NPGCV +P + P + GYPG +
Sbjct: 136 GARDYFADPWTLFVSQMALMGWAEGRRWADYLNPGCVAVEPRLPNRRNPVPDVGYPGGLW 195
Query: 182 FNPLNF-----EPTLEAKEKELANGRLAMLAFLGFLVQHNVTQKGPFDNLLQHLSDPWHN 236
F+ N+ EP + + KE+ NGRLAMLAF+GF Q T +GP DNLL HL+DP H
Sbjct: 196 FDWGNWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHC 255
Query: 237 TIIQTLS 243
+ +
Sbjct: 256 NVFSAFT 262
>Os06g0320500 Similar to Light-harvesting complex I (Fragment)
Length = 241
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 129/245 (52%), Gaps = 33/245 (13%)
Query: 10 VAALRSSASLKSTFLGQSSTRLARAPTTRRNV---RAEAKGEWLPGLPSPTYLNGSLPGD 66
+ LRS +++ L S+ +R P R EW+PG P P +L+GS PGD
Sbjct: 3 TSGLRSCSAVGVPSLLAPSSNRSRLPVCAYATTSGRVTMSAEWMPGQPRPAHLDGSSPGD 62
Query: 67 NGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWY--DAGK 124
GFDPLGLA PEN F ++E+ + RWAML V G+L+PE L + A +W G+
Sbjct: 63 FGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPGGQ 122
Query: 125 ATYFASS------STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSYSLPPHECGYP 178
ATY + T+ VIEF+ + E +R + +DP K YP
Sbjct: 123 ATYLGNPVPWGTLPTILVIEFVAIAFAEHQR--------TMEKDPEKKK---------YP 165
Query: 179 GSVFNPLNF--EPTL--EAKEKELANGRLAMLAFLGFLVQHNV-TQKGPFDNLLQHLSDP 233
G F+PL F +P E K KE+ NGRLAMLAF+GF VQ + GP +NL HLSDP
Sbjct: 166 GGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDP 225
Query: 234 WHNTI 238
WHN I
Sbjct: 226 WHNNI 230
>AK060800
Length = 241
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 129/245 (52%), Gaps = 33/245 (13%)
Query: 10 VAALRSSASLKSTFLGQSSTRLARAPTTRRNV---RAEAKGEWLPGLPSPTYLNGSLPGD 66
+ LRS +++ L S+ +R P R EW+PG P P +L+GS PGD
Sbjct: 3 TSGLRSCSAVGVPSLLAPSSNRSRLPVCAYATTSGRVTMSAEWMPGQPRPAHLDGSSPGD 62
Query: 67 NGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWY--DAGK 124
GFDPLGLA PEN F ++E+ + RWAML V G+L+PE L + A +W G+
Sbjct: 63 FGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPGGQ 122
Query: 125 ATYFASS------STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSYSLPPHECGYP 178
ATY + T+ VIEF+ + E +R + +DP K YP
Sbjct: 123 ATYLGNPVPWGTLPTILVIEFVAIAFAEHQR--------TMEKDPEKKK---------YP 165
Query: 179 GSVFNPLNF--EPTL--EAKEKELANGRLAMLAFLGFLVQHNV-TQKGPFDNLLQHLSDP 233
G F+PL F +P E K KE+ NGRLAMLAF+GF VQ + GP +NL HLSDP
Sbjct: 166 GGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDP 225
Query: 234 WHNTI 238
WHN I
Sbjct: 226 WHNNI 230
>Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment)
Length = 283
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 104/202 (51%), Gaps = 24/202 (11%)
Query: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
P YLNG +PGD G+DP GL++ PE+ + EL++ RWAMLG AG ++PE K G
Sbjct: 85 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 116 APQ--WY-------DAGKATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFK 166
P+ W+ D YF +S + +I ++ G I
Sbjct: 145 GPEAVWFKTGALLLDGNTLNYFGNSIPINLIV---------AVAAEVVLVGGAEYYRIIN 195
Query: 167 SYSLPPHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFLVQHNVTQKGP 222
L + +PG F+PL +P A K KE+ NGRLAM + LGF +Q VT +GP
Sbjct: 196 GLDL--EDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGP 253
Query: 223 FDNLLQHLSDPWHNTIIQTLSG 244
+NL +HLSDP+ N ++ +SG
Sbjct: 254 VENLSKHLSDPFGNNLLTVISG 275
>Os07g0558400 Similar to Chlorophyll a/b-binding protein CP29 precursor
Length = 290
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 116/269 (43%), Gaps = 89/269 (33%)
Query: 34 APTTRRNVRAEAKGEWLPGLPSPTYLNGSLPGDNGFDPLGLAEDPENLRW---------- 83
APTT R + W PG +P YL+GSL GD GFDP GL + E L++
Sbjct: 49 APTTDRPL-------WFPGAVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLA 101
Query: 84 ---------------------------------FVQAELVNGRWAMLGVAGMLLPEVLTK 110
F + EL++GRWAML G L E LT
Sbjct: 102 KNNAGEIIGTRFETGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG 161
Query: 111 IGLIDAPQWYDAGK------ATYFA-----SSSTLFVIEFILFHYVEIRRWQDIKNPGCV 159
+ W DAGK ++Y S STL IE ++ Y+E +R
Sbjct: 162 V------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR---------- 205
Query: 160 NQDPIFKSYSLPPHECGYPG-SVFNPLNFEPTLEAKEK----ELANGRLAMLAFLGFLVQ 214
+ L P + YPG S F+PL E KE+ E+ + RLAM+AFLGF VQ
Sbjct: 206 -------NAELDPEKRLYPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVAFLGFAVQ 258
Query: 215 HNVTQKGPFDNLLQHLSDPWHNTIIQTLS 243
T KGP +N HLSDP H TI T S
Sbjct: 259 AAATGKGPLNNWATHLSDPLHTTIFDTFS 287
>Os03g0592500 Similar to Photosystem II type II chlorophyll a/b binding protein
(Fragment)
Length = 263
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 113/243 (46%), Gaps = 48/243 (19%)
Query: 24 LGQSSTRLARAPTTRRNVRAEAKGEWL-PGLP---------SPTYLNGSLPGDNGFDPLG 73
+G S R+ T RR V++ + W P P +P+YL G PGD G+D G
Sbjct: 26 VGDSGGRI----TMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAG 81
Query: 74 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGL-IDAPQWYDAGKATY----- 127
L+ DPE + E+++ RWAMLG G + PE+L+K G+ W+ AG +
Sbjct: 82 LSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGL 141
Query: 128 ----------FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSYSLPPHECGY 177
S ++ ++ +L +VE R V P+ + + Y
Sbjct: 142 DYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------VGGGPLGEGL-----DKVY 187
Query: 178 PGSVFNPLNF----EPTLEAKEKELANGRLAMLAFLGFLVQHNVTQKGPFDNLLQHLSDP 233
PG F+PL + E K KEL NGRLAM + GF VQ VT KGP +NL H++DP
Sbjct: 188 PGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247
Query: 234 WHN 236
N
Sbjct: 248 VAN 250
>Os09g0346500 Similar to Chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP)
Length = 265
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 120/266 (45%), Gaps = 48/266 (18%)
Query: 2 ASVTARTPVAALRSSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEW-----------L 50
A++ +PV A R++ S S G++ + R + A + W L
Sbjct: 4 ATMALSSPVMA-RAAPSTSSALFGEARITM-RKTAAKPKPAASSGSPWYGADRVLYLGPL 61
Query: 51 PGLPSPTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTK 110
G P P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+L +
Sbjct: 62 SGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 120
Query: 111 IGL-IDAPQWYDAGKAT-------YFASSS--------TLFVIEFILFHYVEIRRWQDIK 154
G+ W+ AG Y + S ++ ++ +L VE R
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG-- 178
Query: 155 NPGCVNQDPIFKSYSLPPHECGYPGSVFNPLNF----EPTLEAKEKELANGRLAMLAFLG 210
P DP+ YPG F+PL E E K KE+ NGRLAM + G
Sbjct: 179 GPLGEVVDPL------------YPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 211 FLVQHNVTQKGPFDNLLQHLSDPWHN 236
F VQ VT KGP +NL HL+DP +N
Sbjct: 227 FFVQAIVTGKGPLENLADHLADPVNN 252
>Os09g0296800 Chlorophyll A-B binding protein family protein
Length = 321
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 114/232 (49%), Gaps = 24/232 (10%)
Query: 32 ARAPTTRRNVRAEAKGEWLPGLPS--PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAEL 89
AR T + + + WL +P P +L G PGD GFD GL DP + E+
Sbjct: 92 ARQARTASSWYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEI 151
Query: 90 VNGRWAMLGVAGMLLPEVLTKIGLID--APQWYDAGKATY------------FASSSTLF 135
++ RWAML G+++PE+L G++ P W+ G A F +
Sbjct: 152 LHCRWAMLAALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQG 211
Query: 136 VIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSYSLPPHECGYPG-SVFNPLNF--EPTL- 191
VI + + + + + G +P+ P + YPG ++F+PL +P
Sbjct: 212 VIVIAICQALLMVGPEYARYCGIEALEPLGLYL---PGDINYPGGALFDPLGLSKDPVAF 268
Query: 192 -EAKEKELANGRLAMLAFLGFLVQHNVTQKGPFDNLLQHLSDPWHNTIIQTL 242
+ K KE+ NGRLAM+A+LGF +Q VT KGP NL++HLSDP HN I+ +
Sbjct: 269 EDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILSSF 320
>AK058312
Length = 266
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 101/204 (49%), Gaps = 34/204 (16%)
Query: 55 SPTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLI 114
+P+YL G PGD G+D GL+ DPE E+++GRWAMLG G + PEVL K +
Sbjct: 64 TPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRV 123
Query: 115 D--APQWYDAGKATY-------------FASSSTLFVIEF--ILFHYVEIRRWQDIKNPG 157
D P W+ AG + + S L V+ F +L VE R + PG
Sbjct: 124 DFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGL--PG 181
Query: 158 CVNQDPIFKSYSLPPHECGYPGSVFNPLNF--EPTL--EAKEKELANGRLAMLAFLGFLV 213
+ + ++ G F+PL +P E K KE+ NGRLAM + GF V
Sbjct: 182 VGDGNDLYPG-----------GQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV 230
Query: 214 QHNVTQKGPFDNLLQHLSDPWHNT 237
Q VT KGP +NLL HL+DP +N
Sbjct: 231 QAIVTGKGPLENLLDHLADPVNNN 254
>Os07g0562700 Similar to Type III chlorophyll a/b-binding protein (Fragment)
Length = 266
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 100/203 (49%), Gaps = 34/203 (16%)
Query: 55 SPTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLI 114
+P+YL G PGD G+D GL+ DPE E+++GRWAMLG G + PEVL K +
Sbjct: 64 TPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRV 123
Query: 115 D--APQWYDAGKATY-------------FASSSTLFVIEF--ILFHYVEIRRWQDIKNPG 157
D P W+ AG + + S L V+ F +L VE R + PG
Sbjct: 124 DFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGL--PG 181
Query: 158 CVNQDPIFKSYSLPPHECGYPGSVFNPLNF--EPTL--EAKEKELANGRLAMLAFLGFLV 213
+ + ++ G F+PL +P E K KE+ NGRLAM + GF V
Sbjct: 182 VGDGNDLYPG-----------GQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV 230
Query: 214 QHNVTQKGPFDNLLQHLSDPWHN 236
Q VT KGP +NLL HL+DP N
Sbjct: 231 QAIVTGKGPLENLLDHLADPVAN 253
>Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast precursor (LHCII
type I CAB-2) (LHCP)
Length = 261
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 96/202 (47%), Gaps = 34/202 (16%)
Query: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGL-I 114
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+L + G+
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 121
Query: 115 DAPQWYDAGKAT-------YFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGCV 159
W+ AG Y + S ++ ++ +L VE R P
Sbjct: 122 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--GPLGE 179
Query: 160 NQDPIFKSYSLPPHECGYPGSVFNPLNF----EPTLEAKEKELANGRLAMLAFLGFLVQH 215
DP+ YPG F+PL E E K KE+ NGRLAM + GF VQ
Sbjct: 180 VVDPL------------YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 227
Query: 216 NVTQKGPFDNLLQHLSDPWHNT 237
VT KGP +NL HL+DP +N
Sbjct: 228 IVTGKGPLENLADHLADPVNNN 249
>Os01g0720500 Similar to Type I chlorophyll a/b-binding protein b (Fragment)
Length = 265
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 96/195 (49%), Gaps = 20/195 (10%)
Query: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGL-I 114
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+L + G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 115 DAPQWYDAGKATYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGC-VNQDPIFKSYSLPP 172
W+ AG + F+ ++ L H I W GC V + Y +
Sbjct: 126 GEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIW------GCQVVLMGAVEGYRVAG 178
Query: 173 HECG------YPGSVFNPLNF----EPTLEAKEKELANGRLAMLAFLGFLVQHNVTQKGP 222
G YPG F+PL E E K KE+ NGRLAM + GF VQ VT KGP
Sbjct: 179 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 223 FDNLLQHLSDPWHNT 237
+NL HL+DP +N
Sbjct: 239 LENLADHLADPVNNN 253
>Os04g0457000 Similar to Chlorophyll a/b-binding protein CP24, photosystem II
(Fragment)
Length = 252
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 115/232 (49%), Gaps = 43/232 (18%)
Query: 19 LKSTFLGQSSTRLARA-------PTTRRNVRAEAKGEWLPGLPS------PTYLNGSLPG 65
LK+ FLG + LA A P RR + AK W+P S P +L+GSLPG
Sbjct: 15 LKTPFLG-AKRALANAVGVAGAKPAPRRALVVSAKKSWIPAFKSDAEFINPPWLDGSLPG 73
Query: 66 DNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWYDAG-- 123
D GFDPLGL +DP L+W+ +AEL++GRWAM V G+ + + + + W++AG
Sbjct: 74 DFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGV------PWFEAGAQ 127
Query: 124 -KATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIFKSYSLPPHECG 176
+A S +L + +L +VE +RW D NP + +++S E G
Sbjct: 128 PEAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQAVEWATPWSRTAENFSNATGEQG 187
Query: 177 YPGS-VFNPLN---------FEPTLEAKEK----ELANGRLAMLAFLGFLVQ 214
YPG F+PL + P + ++ E+ + RLAMLA L F +
Sbjct: 188 YPGGKFFDPLGLGGETRDGVYIPDTDKLDRLKLAEIKHARLAMLAMLIFYFE 239
>Os02g0197600 Similar to PSI type III chlorophyll a/b-binding protein
Length = 180
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Query: 149 RWQDIKNPGCVNQDPIF--KSYSLPPHECGYPGS-VFNPLNFEPTLEA-----KEKELAN 200
R+QD PG + + + Y E YPG +FNPL F EA K KE+ N
Sbjct: 76 RFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEAEMKELKLKEIKN 135
Query: 201 GRLAMLAFLGFLVQHNVTQKGPFDNLLQHLSDPWHNTIIQTLS 243
GRLAMLAFLGF VQ T GP NLL HL+DP HN I+ +L
Sbjct: 136 GRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSLK 178
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,794,694
Number of extensions: 379732
Number of successful extensions: 790
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 756
Number of HSP's successfully gapped: 17
Length of query: 244
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 146
Effective length of database: 11,918,829
Effective search space: 1740149034
Effective search space used: 1740149034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)