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Os07g0577600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Type II chlorophyll a/b binding protein from photosystem I precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.2 (0.0232) R2 : 0.717
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.97 (0.0674) R2dE : 0.533 R2E : 0.53
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.756 (0.0489) R2dN8 : 0.187 R2N8 : 0.184
σ : 0.435
deviance : 87.42
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 12.35
memory length : 137
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.3
open length of G : 7.58

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
75.87 0.409 15.2 -0.55 0.518 -1.52 0.551 0.0983 -0.772 12 14.77 93 19.9 7.17
75.69 0.405 15.2 -0.555 0.511 -1.53 0.518 -- -0.779 11.9 14.84 96 19.8 7.28
76.49 0.407 15.2 -0.567 0.485 -1.5 -- -0.298 -0.784 11.4 13.87 87 19.8 7.35
76.68 0.408 15.2 -0.53 0.478 -1.56 -- -- -0.777 11.7 14.82 97 19.8 7.37
82.63 0.423 15.2 -0.384 -- -1.77 -- -0.53 -0.727 -- 12.87 88 19.8 7.55
114.8 0.502 15.2 -0.622 1.41 -- 0.675 -- -0.901 11.9 -- -- -- --
116.77 0.506 15.2 -0.596 1.4 -- -- -- -0.898 11.9 -- -- -- --
79.88 0.416 15.2 -0.55 -- -1.9 -- -- -0.801 -- 11.36 122 19.5 7.57
83.91 0.427 15.2 -- 0.47 -1.59 -- -- -0.73 11.8 15.27 106 19.7 7.35
240.6 0.725 15.2 -0.638 -- -- -- -- -0.917 -- -- -- -- --
126.13 0.525 15.2 -- 1.41 -- -- -- -0.832 11.9 -- -- -- --
87.42 0.435 15.2 -- -- -1.97 -- -- -0.756 -- 12.35 137 19.3 7.58
251.35 0.74 15.2 -- -- -- -- -- -0.846 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.66 temperature 15.0 90 > th dose dependent rect. 20 7
3 79.45 temperature 15.0 10 > th dose dependent rect. 20 7
5 79.70 temperature 10.0 270 > th dose dependent rect. 18 8
25 83.37 temperature 20.0 90 > th dose independent rect. 20 7
70 87.40 radiation 30.0 90 < th dose independent rect. 3 6
74 87.53 temperature 20.0 270 > th dose dependent rect. 22 1
76 87.89 wind 5.0 90 < th dose independent rect. 3 6
77 87.89 temperature 10.0 30 > th dose dependent rect. 3 6
79 87.93 humidity 60.0 270 > th dose independent rect. 17 9
82 87.96 temperature 30.0 270 < th dose independent rect. 18 8
85 88.04 humidity 70.0 90 > th dose independent rect. 3 6
87 88.10 atmosphere 1010.0 90 < th dose independent rect. 20 7
90 88.15 temperature 30.0 90 < th dose independent rect. 3 6
91 88.26 humidity 50.0 270 > th dose independent rect. 5 22
94 88.41 temperature 25.0 270 > th dose independent rect. 20 3
98 88.50 atmosphere 995.0 30 > th dose dependent rect. 3 6
99 88.53 wind 9.0 30 < th dose dependent rect. 3 6
107 88.61 precipitation 0.1 90 < th dose independent rect. 3 6
108 88.61 precipitation 0.1 90 < th dose dependent rect. 3 6
110 88.64 temperature 20.0 10 > th dose independent rect. 22 5
118 88.78 temperature 10.0 90 > th dose independent rect. 3 6
122 88.78 atmosphere 995.0 90 > th dose independent rect. 3 6
123 88.78 atmosphere 1015.0 90 < th dose independent rect. 3 6
124 88.78 temperature 10.0 90 > th dose independent rect. 9 18
126 88.83 atmosphere 1015.0 90 < th dose independent rect. 9 18
131 88.92 radiation 1.0 270 < th dose independent rect. 18 8
140 89.14 wind 9.0 90 < th dose independent rect. 9 18
145 89.19 radiation 1.0 270 < th dose dependent rect. 18 8
146 89.20 humidity 50.0 270 > th dose independent rect. 7 19
154 89.42 precipitation 0.1 90 < th dose independent rect. 9 18
156 89.42 precipitation 0.1 90 < th dose dependent rect. 9 18
177 89.57 humidity 50.0 90 > th dose dependent rect. 3 6
184 89.64 wind 9.0 90 < th dose independent rect. 3 17
186 89.67 wind 9.0 90 < th dose independent rect. 20 7
187 89.67 precipitation 0.1 270 < th dose independent rect. 2 16
188 89.67 precipitation 0.1 270 < th dose dependent rect. 2 16
190 89.69 precipitation 0.1 90 < th dose independent rect. 20 7
191 89.69 precipitation 0.1 90 < th dose dependent rect. 20 7
193 89.70 temperature 30.0 90 < th dose independent rect. 20 7
194 89.70 humidity 50.0 90 > th dose independent rect. 20 7
197 89.70 atmosphere 995.0 90 > th dose independent rect. 20 7
198 89.70 radiation 1.0 90 < th dose independent rect. 20 7
203 89.70 temperature 10.0 90 > th dose independent rect. 3 17
204 89.70 atmosphere 1015.0 90 < th dose independent rect. 3 17
205 89.70 radiation 1.0 90 < th dose dependent rect. 20 7
215 89.79 wind 9.0 270 < th dose independent rect. 18 8
231 89.91 atmosphere 995.0 270 > th dose independent rect. 18 8
265 90.20 radiation 40.0 90 < th dose dependent rect. 3 6
281 90.36 wind 9.0 30 < th dose dependent rect. 20 7
284 90.40 temperature 10.0 270 > th dose dependent rect. 3 2
300 90.63 atmosphere 995.0 270 > th dose independent rect. 2 16
307 90.71 humidity 50.0 90 > th dose dependent rect. 20 7
313 90.80 wind 1.0 270 > th dose independent rect. 2 16
335 91.04 wind 9.0 10 < th dose independent rect. 4 16
343 91.11 wind 9.0 10 < th dose independent rect. 20 8
354 91.14 atmosphere 1015.0 270 < th dose independent rect. 18 8
356 91.16 temperature 30.0 10 < th dose independent rect. 20 8
357 91.16 humidity 50.0 10 > th dose independent rect. 20 8
360 91.16 atmosphere 995.0 10 > th dose independent rect. 20 8
361 91.16 radiation 1.0 10 < th dose independent rect. 20 8
366 91.16 temperature 10.0 10 > th dose independent rect. 4 16
368 91.16 atmosphere 1015.0 10 < th dose independent rect. 4 16
369 91.16 radiation 1.0 10 < th dose dependent rect. 20 8
375 91.17 temperature 10.0 10 > th dose dependent rect. 9 18
376 91.18 wind 5.0 270 < th dose independent rect. 3 2
388 91.26 atmosphere 995.0 90 > th dose independent rect. 9 18
396 91.33 precipitation 0.1 270 < th dose independent rect. 18 8
397 91.33 precipitation 0.1 270 < th dose dependent rect. 18 8
415 91.50 radiation 1.0 270 < th dose dependent rect. 3 2
416 91.51 precipitation 0.1 10 < th dose independent rect. 4 16
418 91.51 precipitation 0.1 10 < th dose dependent rect. 4 16
422 91.55 precipitation 0.1 270 < th dose independent rect. 3 2
423 91.55 precipitation 0.1 270 < th dose dependent rect. 3 2
456 91.61 wind 5.0 270 < th dose independent rect. 1 6
460 91.66 wind 1.0 270 > th dose independent rect. 18 8
465 91.69 atmosphere 995.0 270 > th dose dependent rect. 3 2
470 91.72 radiation 1.0 270 < th dose dependent rect. 5 21
477 91.76 radiation 1.0 270 < th dose independent rect. 3 2
504 91.87 temperature 10.0 270 > th dose independent rect. 3 2
506 91.87 temperature 30.0 270 < th dose independent rect. 3 2
507 91.87 humidity 50.0 270 > th dose independent rect. 3 2
510 91.87 atmosphere 995.0 270 > th dose independent rect. 3 2
511 91.87 atmosphere 1010.0 270 < th dose independent rect. 3 2
516 91.87 precipitation 0.1 270 < th dose independent rect. 14 16
517 91.87 temperature 10.0 270 > th dose independent rect. 5 22
518 91.87 precipitation 0.1 270 < th dose dependent rect. 14 16
523 91.89 humidity 50.0 270 > th dose dependent rect. 3 2
578 92.06 wind 9.0 90 < th dose dependent rect. 9 18
583 92.09 atmosphere 1015.0 270 < th dose independent rect. 7 18
591 92.12 atmosphere 995.0 10 > th dose independent rect. 4 16
618 92.18 precipitation 0.1 270 < th dose independent rect. 1 6
621 92.18 precipitation 0.1 270 < th dose dependent rect. 1 6
622 92.19 temperature 10.0 1440 > th dose independent rect. 4 6
625 92.19 atmosphere 995.0 1440 > th dose independent rect. 4 6
626 92.19 atmosphere 1015.0 1440 < th dose independent rect. 4 6
627 92.19 temperature 10.0 1440 > th dose independent rect. 10 18
647 92.27 temperature 10.0 270 > th dose independent rect. 6 8
648 92.27 atmosphere 995.0 270 > th dose independent rect. 6 8
649 92.27 atmosphere 1015.0 270 < th dose independent rect. 6 8
650 92.27 temperature 10.0 270 > th dose independent rect. 14 16
671 92.29 precipitation 0.1 270 < th dose independent rect. 6 8
674 92.29 precipitation 0.1 270 < th dose dependent rect. 6 8
689 92.34 humidity 70.0 270 > th dose independent rect. 1 6
716 92.42 wind 9.0 270 < th dose independent rect. 14 16
718 92.43 wind 9.0 270 < th dose independent rect. 6 8
720 92.45 humidity 70.0 270 > th dose independent rect. 1 8
721 92.45 wind 9.0 270 < th dose independent rect. 5 22
728 92.48 temperature 10.0 270 > th dose independent rect. 1 6
730 92.48 temperature 30.0 270 < th dose independent rect. 1 6
731 92.48 humidity 50.0 270 > th dose independent rect. 1 6
733 92.48 atmosphere 995.0 270 > th dose independent rect. 1 6
734 92.48 atmosphere 1015.0 270 < th dose independent rect. 1 6
753 92.55 wind 1.0 270 > th dose independent rect. 1 6
757 92.55 radiation 1.0 270 < th dose dependent rect. 10 16
779 92.59 wind 9.0 270 < th dose independent rect. 7 18
787 92.62 radiation 20.0 14400 < th dose dependent rect. 21 7
913 93.06 wind 9.0 270 < th dose dependent rect. 3 2
955 93.28 humidity 50.0 90 > th dose dependent rect. 3 8
998 93.40 radiation 40.0 10 < th dose dependent rect. 3 6