BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0577600 Os07g0577600|AK119176
(263 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0577600 Similar to Type II chlorophyll a/b binding pro... 398 e-111
Os09g0439500 Similar to Type II chlorophyll a/b binding pro... 274 6e-74
Os08g0435900 Similar to LHC I type IV chlorophyll binding p... 201 5e-52
Os02g0764500 Similar to Lhca5 protein 184 5e-47
Os03g0592500 Similar to Photosystem II type II chlorophyll ... 126 1e-29
Os09g0296800 Chlorophyll A-B binding protein family protein 125 3e-29
Os01g0720500 Similar to Type I chlorophyll a/b-binding prot... 124 9e-29
Os09g0346500 Similar to Chlorophyll a-b binding protein, ch... 122 2e-28
Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast... 122 3e-28
Os06g0320500 Similar to Light-harvesting complex I (Fragment) 120 9e-28
AK060800 120 9e-28
Os07g0558400 Similar to Chlorophyll a/b-binding protein CP2... 117 7e-27
Os04g0457000 Similar to Chlorophyll a/b-binding protein CP2... 115 2e-26
Os07g0562700 Similar to Type III chlorophyll a/b-binding pr... 115 3e-26
AK058312 115 3e-26
Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment) 115 3e-26
Os02g0197600 Similar to PSI type III chlorophyll a/b-bindin... 87 1e-17
>Os07g0577600 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 263
Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/208 (93%), Positives = 194/208 (93%)
Query: 56 PDRPIWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIF 115
PDRPIWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIF
Sbjct: 56 PDRPIWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIF 115
Query: 116 IPEFLTKIGILNTPSWYTAGEQQYFXXXXXXXXXXXXXXGWAEGRRWADIIKPGCVNTDP 175
IPEFLTKIGILNTPSWYTAGEQQYF GWAEGRRWADIIKPGCVNTDP
Sbjct: 116 IPEFLTKIGILNTPSWYTAGEQQYFTDTTTLFIIELILIGWAEGRRWADIIKPGCVNTDP 175
Query: 176 IFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEY 235
IFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEY
Sbjct: 176 IFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEY 235
Query: 236 TGTGPIDNLFAHLADPGHATIFQAFTPK 263
TGTGPIDNLFAHLADPGHATIFQAFTPK
Sbjct: 236 TGTGPIDNLFAHLADPGHATIFQAFTPK 263
>Os09g0439500 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 264
Score = 274 bits (700), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 135/206 (65%), Positives = 147/206 (71%)
Query: 56 PDRPIWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIF 115
PDRP+WFPGS+PPPWLDGSLPGDFGFDPLGLGSDPE LRW QAEL+H RWAML AGI
Sbjct: 57 PDRPLWFPGSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGIL 116
Query: 116 IPEFLTKIGILNTPSWYTAGEQQYFXXXXXXXXXXXXXXGWAEGRRWADIIKPGCVNTDP 175
+PE L K G + SW AG + YF GWAEGRRWAD + PGCV +P
Sbjct: 117 VPEVLEKWGFMEDYSWIDAGARDYFADPWTLFVSQMALMGWAEGRRWADYLNPGCVAVEP 176
Query: 176 IFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEY 235
PN + DVGYPGGLWFD WG GSPE + LRTKEIKNGRLAMLA +G WFQA Y
Sbjct: 177 RLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAVY 236
Query: 236 TGTGPIDNLFAHLADPGHATIFQAFT 261
TG GPIDNL HLADPGH +F AFT
Sbjct: 237 TGEGPIDNLLHHLADPGHCNVFSAFT 262
>Os08g0435900 Similar to LHC I type IV chlorophyll binding protein (Fragment)
Length = 244
Score = 201 bits (511), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 124/201 (61%), Gaps = 6/201 (2%)
Query: 61 WFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFL 120
W PG P +L+GSLPGD GFDPLGL DPE+LRW VQAELV+ RWAMLG AG+ +PE L
Sbjct: 49 WLPGLPSPTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVL 108
Query: 121 TKIGILNTPSWYTAGEQQYFXXXXXXXXXXXXXXGWAEGRRWADIIKPGCVNTDPIFPNN 180
TKIG+++ P WY AG+ YF + E RRW DI PGCVN DPIF +
Sbjct: 109 TKIGLIDAPQWYDAGKATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSY 168
Query: 181 KLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGP 240
L + GYPG + F+PL + E E + KE+ NGRLAMLA +G Q T GP
Sbjct: 169 SLPPHECGYPGSV-FNPLNF-----EPTLEAKEKELANGRLAMLAFLGFLVQHNVTQKGP 222
Query: 241 IDNLFAHLADPGHATIFQAFT 261
DNL HL+DP H TI Q +
Sbjct: 223 FDNLLQHLSDPWHNTIIQTLS 243
>Os02g0764500 Similar to Lhca5 protein
Length = 261
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 97/208 (46%), Positives = 121/208 (58%), Gaps = 4/208 (1%)
Query: 57 DRPIWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFI 116
+R W PG PPP LDG+LPGDFGFDPLGLG +P +L+W VQAELVHCR+AM G AGI
Sbjct: 53 ERATWLPGLDPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILA 112
Query: 117 PEFLTKIGILNTPSWYTAGEQQY-FXXXXXXXXXXXXXXGWAEGRRWADIIKPGCVNTDP 175
+ + GI N P W+ AG ++ F G+AE +R+ D I PG +
Sbjct: 113 TDLIRVSGINNLPVWFEAGATKFDFANTTALFFVQLLLMGFAETKRYMDFINPGSQAEEG 172
Query: 176 IF--PNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWFQA 233
F L G+ GYPGG F+PLG E E + KEIKNGRLAM+A++G QA
Sbjct: 173 TFLGIEAALAGSQPGYPGGPLFNPLGLAK-DIENADEAKLKEIKNGRLAMVAMLGFIVQA 231
Query: 234 EYTGTGPIDNLFAHLADPGHATIFQAFT 261
T GPIDNL HL+DP + I +
Sbjct: 232 SVTHVGPIDNLLTHLSDPFNKNIIHTLS 259
>Os03g0592500 Similar to Photosystem II type II chlorophyll a/b binding protein
(Fragment)
Length = 263
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 104/200 (52%), Gaps = 6/200 (3%)
Query: 56 PDRPIWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG 113
PDRP + P +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G
Sbjct: 50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALG 109
Query: 114 IFIPEFLTKIGI-LNTPSWYTAGEQQYFXXXXXXXXXXXXXXGWAEGRRWA-DIIKPGCV 171
PE L+K G+ W+ AG Q + + WA ++ G V
Sbjct: 110 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFV 169
Query: 172 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWF 231
+ G D YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G +
Sbjct: 170 EGYRVGGGPLGEGLDKVYPGGA-FDPLGLAD-DPDTFAELKVKELKNGRLAMFSMFGFFV 227
Query: 232 QAEYTGTGPIDNLFAHLADP 251
QA TG GPI+NLF H+ADP
Sbjct: 228 QAIVTGKGPIENLFDHVADP 247
>Os09g0296800 Chlorophyll A-B binding protein family protein
Length = 321
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 106/219 (48%), Gaps = 16/219 (7%)
Query: 57 DRPIWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG 113
+RP W G P P L G PGD+GFD GLG DP + E++HCRWAML A G
Sbjct: 105 ERPRWL-GPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALG 163
Query: 114 IFIPEFLTKIGILN--TPSWYTAGEQQYFXXXXXXXXXXXXXXGWAEGRRWADIIKPGCV 171
+ +PE L G+++ P W+ G + +G I + +
Sbjct: 164 VVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLM 223
Query: 172 ---------NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLA 222
+ + P D+ YPGG FDPLG + P ++L+ KEIKNGRLA
Sbjct: 224 VGPEYARYCGIEALEPLGLYLPGDINYPGGALFDPLGL-SKDPVAFEDLKVKEIKNGRLA 282
Query: 223 MLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAFT 261
M+A +G + QA TG GPI NL HL+DP H I +F
Sbjct: 283 MVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILSSFV 321
>Os01g0720500 Similar to Type I chlorophyll a/b-binding protein b (Fragment)
Length = 265
Score = 124 bits (310), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 97/187 (51%), Gaps = 4/187 (2%)
Query: 67 PPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI- 125
PP +L G PGD+G+D GL +DPE+ N + E++HCRWAMLGA G PE L + G+
Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 124
Query: 126 LNTPSWYTAGEQQYFXXXXXXXXXXXXXXGWAEGRRW-ADIIKPGCVNTDPIFPNNKLTG 184
W+ AG Q + + W ++ G V +
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVAGGPLGEV 184
Query: 185 TDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNL 244
D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + QA TG GP++NL
Sbjct: 185 VDPLYPGG-SFDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
Query: 245 FAHLADP 251
HLADP
Sbjct: 243 ADHLADP 249
>Os09g0346500 Similar to Chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP)
Length = 265
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 97/187 (51%), Gaps = 4/187 (2%)
Query: 67 PPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI- 125
PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + G+
Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 124
Query: 126 LNTPSWYTAGEQQYFXXXXXXXXXXXXXXGWAEGRRWA-DIIKPGCVNTDPIFPNNKLTG 184
W+ AG Q + + WA ++ G V I
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEV 184
Query: 185 TDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNL 244
D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + QA TG GP++NL
Sbjct: 185 VDPLYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
Query: 245 FAHLADP 251
HLADP
Sbjct: 243 ADHLADP 249
>Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast precursor (LHCII
type I CAB-2) (LHCP)
Length = 261
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 97/187 (51%), Gaps = 4/187 (2%)
Query: 67 PPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI- 125
PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + G+
Sbjct: 61 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 120
Query: 126 LNTPSWYTAGEQQYFXXXXXXXXXXXXXXGWAEGRRWA-DIIKPGCVNTDPIFPNNKLTG 184
W+ AG Q + + WA ++ G V I
Sbjct: 121 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEV 180
Query: 185 TDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNL 244
D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + QA TG GP++NL
Sbjct: 181 VDPLYPGG-SFDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 238
Query: 245 FAHLADP 251
HLADP
Sbjct: 239 ADHLADP 245
>Os06g0320500 Similar to Light-harvesting complex I (Fragment)
Length = 241
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 104/212 (49%), Gaps = 28/212 (13%)
Query: 61 WFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFL 120
W PG P LDGS PGDFGFDPLGL + PE+ ++E+ HCRWAML G+ +PE L
Sbjct: 45 WMPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEAL 104
Query: 121 TKIGILNTPSWYT--AGEQQYF------XXXXXXXXXXXXXXGWAEGRRWADIIKPGCVN 172
+ W G+ Y +AE +R +
Sbjct: 105 GLGNWVQAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQR--------TME 156
Query: 173 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWF- 231
DP YPGG FDPLG+ + P K +E + KEIKNGRLAMLA +G
Sbjct: 157 KDP---------EKKKYPGGA-FDPLGF-SKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQ 205
Query: 232 QAEYTGTGPIDNLFAHLADPGHATIFQAFTPK 263
Q+ Y GTGP++NL +HL+DP H I P+
Sbjct: 206 QSAYPGTGPLENLASHLSDPWHNNIGDIIIPR 237
>AK060800
Length = 241
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 104/212 (49%), Gaps = 28/212 (13%)
Query: 61 WFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFL 120
W PG P LDGS PGDFGFDPLGL + PE+ ++E+ HCRWAML G+ +PE L
Sbjct: 45 WMPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEAL 104
Query: 121 TKIGILNTPSWYT--AGEQQYF------XXXXXXXXXXXXXXGWAEGRRWADIIKPGCVN 172
+ W G+ Y +AE +R +
Sbjct: 105 GLGNWVQAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQR--------TME 156
Query: 173 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWF- 231
DP YPGG FDPLG+ + P K +E + KEIKNGRLAMLA +G
Sbjct: 157 KDP---------EKKKYPGGA-FDPLGF-SKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQ 205
Query: 232 QAEYTGTGPIDNLFAHLADPGHATIFQAFTPK 263
Q+ Y GTGP++NL +HL+DP H I P+
Sbjct: 206 QSAYPGTGPLENLASHLSDPWHNNIGDIIIPR 237
>Os07g0558400 Similar to Chlorophyll a/b-binding protein CP29 precursor
Length = 290
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 111/248 (44%), Gaps = 56/248 (22%)
Query: 57 DRPIWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNV------------------- 97
DRP+WFPG+ P +LDGSL GD+GFDP GLG E L++ +
Sbjct: 53 DRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGEIIGTR 112
Query: 98 ------------------------QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYT 133
+ EL+H RWAML G E+LT + +W
Sbjct: 113 FETGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQD 166
Query: 134 AGEQQYFXXXXXXXXXXXXXXGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGL 193
AG+ + W +++ G + N +L YPGG
Sbjct: 167 AGKVELVDGSSYLGQPLPFSISTL---IWIEVLVIGYIEFQR---NAELDPEKRLYPGGS 220
Query: 194 WFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGH 253
+FDPLG + PEK + L+ EIK+ RLAM+A +G QA TG GP++N HL+DP H
Sbjct: 221 YFDPLGLAS-DPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 279
Query: 254 ATIFQAFT 261
TIF F+
Sbjct: 280 TTIFDTFS 287
>Os04g0457000 Similar to Chlorophyll a/b-binding protein CP24, photosystem II
(Fragment)
Length = 252
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 93/183 (50%), Gaps = 23/183 (12%)
Query: 68 PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILN 127
PPWLDGSLPGDFGFDPLGLG DP L+W +AEL+H RWAM GIF+ + + +
Sbjct: 64 PPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGV---- 119
Query: 128 TPSWYTAGEQQYFX---XXXXXXXXXXXXXGWAEGRRWADIIKPGCVNTDPIFP------ 178
W+ AG Q GW E +RW D P + P
Sbjct: 120 --PWFEAGAQPEAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQAVEWATPWSRTAE 177
Query: 179 NNKLTGTDVGYPGGLWFDPLGWGTGS--------PEKIKELRTKEIKNGRLAMLAVMGAW 230
N + GYPGG +FDPLG G + +K+ L+ EIK+ RLAMLA++ +
Sbjct: 178 NFSNATGEQGYPGGKFFDPLGLGGETRDGVYIPDTDKLDRLKLAEIKHARLAMLAMLIFY 237
Query: 231 FQA 233
F+A
Sbjct: 238 FEA 240
>Os07g0562700 Similar to Type III chlorophyll a/b-binding protein (Fragment)
Length = 266
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 102/204 (50%), Gaps = 12/204 (5%)
Query: 56 PDRPIWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG 113
PDR + + P +L G PGD+G+D GL +DPE+ N E++H RWAMLGA G
Sbjct: 51 PDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 110
Query: 114 IFIPEFLTK-IGI-LNTPSWYTAGEQQYFXXXXXXXXXXXXXXGWAEGRRWA-DIIKPGC 170
PE L K + + P W+ AG Q + + ++ G
Sbjct: 111 CITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 170
Query: 171 VNTDPIFPNNKLTGTDVG---YPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVM 227
V I N L G G YPGG +FDPLG P EL+ KEIKNGRLAM ++
Sbjct: 171 VEGYRI---NGLPGVGDGNDLYPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMF 226
Query: 228 GAWFQAEYTGTGPIDNLFAHLADP 251
G + QA TG GP++NL HLADP
Sbjct: 227 GFFVQAIVTGKGPLENLLDHLADP 250
>AK058312
Length = 266
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 102/204 (50%), Gaps = 12/204 (5%)
Query: 56 PDRPIWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG 113
PDR + + P +L G PGD+G+D GL +DPE+ N E++H RWAMLGA G
Sbjct: 51 PDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 110
Query: 114 IFIPEFLTK-IGI-LNTPSWYTAGEQQYFXXXXXXXXXXXXXXGWAEGRRWA-DIIKPGC 170
PE L K + + P W+ AG Q + + ++ G
Sbjct: 111 CITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 170
Query: 171 VNTDPIFPNNKLTGTDVG---YPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVM 227
V I N L G G YPGG +FDPLG P EL+ KEIKNGRLAM ++
Sbjct: 171 VEGYRI---NGLPGVGDGNDLYPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMF 226
Query: 228 GAWFQAEYTGTGPIDNLFAHLADP 251
G + QA TG GP++NL HLADP
Sbjct: 227 GFFVQAIVTGKGPLENLLDHLADP 250
>Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment)
Length = 283
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 101/212 (47%), Gaps = 31/212 (14%)
Query: 56 PDRPIWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLG 110
PDR I+ P S P +L+G +PGD+G+DP GL PE EL+H RWAMLG
Sbjct: 68 PDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLG 127
Query: 111 AAGIFIPEFLTKIGILNTPS--WYTAGE-------QQYFXXXXXXXXXXXXXXGWAE--G 159
AAG IPE K G P W+ G YF G
Sbjct: 128 AAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGG 187
Query: 160 RRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNG 219
+ II N L D +PGG FDPLG + P++ L+ KEIKNG
Sbjct: 188 AEYYRII-------------NGLDLEDKLHPGG-PFDPLGLAS-DPDQAALLKVKEIKNG 232
Query: 220 RLAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 251
RLAM +++G + QA TG GP++NL HL+DP
Sbjct: 233 RLAMFSMLGFFIQAYVTGEGPVENLSKHLSDP 264
>Os02g0197600 Similar to PSI type III chlorophyll a/b-binding protein
Length = 180
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 161 RWADIIKPGCVNTDPIFPNNK-LTGT-DVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKN 218
R+ D PG + K L G+ + YPGG F+PLG+GT S ++KEL+ KEIKN
Sbjct: 76 RFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEAEMKELKLKEIKN 135
Query: 219 GRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAFT 261
GRLAMLA +G QA +TG GP+ NL HLADP H I +
Sbjct: 136 GRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSLK 178
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.143 0.495
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,650,669
Number of extensions: 381489
Number of successful extensions: 766
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 730
Number of HSP's successfully gapped: 23
Length of query: 263
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 164
Effective length of database: 11,866,615
Effective search space: 1946124860
Effective search space used: 1946124860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)