Os09g0296800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Chlorophyll A-B binding protein family protein.
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Os09g0296800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Chlorophyll A-B binding protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.97 | 0.382 | 12.2 | -0.649 | 2.43 | 1.06 | 1.05 | -0.053 | -0.317 | 8.52 | 82.03 | 939 | -- | -- |
| 65.94 | 0.378 | 12.2 | -0.64 | 2.43 | 1.06 | 1.06 | -- | -0.32 | 8.53 | 83 | 948 | -- | -- |
| 68.77 | 0.386 | 12.2 | -0.641 | 2.46 | 1.07 | -- | -0.753 | -0.322 | 8.51 | 83.88 | 933 | -- | -- |
| 69.5 | 0.388 | 12.2 | -0.601 | 2.41 | 1.03 | -- | -- | -0.325 | 8.52 | 83.67 | 954 | -- | -- |
| 324.42 | 0.839 | 12.3 | -0.521 | -- | 0.693 | -- | -0.29 | -0.323 | -- | 82.92 | 2929 | -- | -- |
| 84.76 | 0.432 | 12.2 | -0.501 | 2.11 | -- | 0.875 | -- | -0.353 | 8.28 | -- | -- | -- | -- |
| 87.12 | 0.437 | 12.2 | -0.475 | 2.11 | -- | -- | -- | -0.354 | 8.26 | -- | -- | -- | -- |
| 324.17 | 0.839 | 12.3 | -0.534 | -- | 0.735 | -- | -- | -0.314 | -- | 83 | 2930 | -- | -- |
| 78.75 | 0.413 | 12.2 | -- | 2.4 | 1.03 | -- | -- | -0.319 | 8.57 | 158.2 | 960 | -- | -- |
| 334.35 | 0.854 | 12.3 | -0.46 | -- | -- | -- | -- | -0.33 | -- | -- | -- | -- | -- |
| 93.06 | 0.451 | 12.2 | -- | 2.11 | -- | -- | -- | -0.301 | 8.28 | -- | -- | -- | -- |
| 330.91 | 0.847 | 12.3 | -- | -- | 0.699 | -- | -- | -0.279 | -- | 85 | 2927 | -- | -- |
| 339.93 | 0.861 | 12.3 | -- | -- | -- | -- | -- | -0.279 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.21 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 5 | 66.79 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 33 | 68.14 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 49 | 68.41 | humidity | 90 | 720 | < th | dose dependent | rect. | 12 | 10 |
| 50 | 68.42 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 51 | 68.42 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 55 | 68.48 | humidity | 90 | 720 | < th | dose dependent | rect. | 12 | 12 |
| 58 | 68.51 | humidity | 50 | 720 | > th | dose dependent | sin | 18 | NA |
| 59 | 68.51 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 62 | 68.55 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 71 | 68.67 | humidity | 90 | 720 | < th | dose dependent | rect. | 10 | 14 |
| 74 | 68.68 | humidity | 50 | 720 | > th | dose dependent | rect. | 8 | 15 |
| 84 | 68.79 | humidity | 90 | 720 | < th | dose dependent | sin | 18 | NA |
| 98 | 68.87 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 125 | 68.98 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 6 |
| 142 | 69.05 | humidity | 80 | 720 | < th | dose dependent | rect. | 13 | 20 |
| 177 | 69.16 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 14 |
| 243 | 69.37 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 360 | 69.70 | humidity | 70 | 720 | > th | dose independent | sin | 16 | NA |
| 375 | 69.73 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 19 |
| 413 | 69.82 | humidity | 70 | 720 | < th | dose independent | sin | 16 | NA |
| 430 | 69.85 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 6 |
| 563 | 70.06 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 20 |
| 572 | 70.08 | radiation | 1 | 90 | < th | dose independent | sin | 19 | NA |
| 576 | 70.09 | humidity | 50 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 582 | 70.11 | radiation | 1 | 90 | > th | dose independent | sin | 19 | NA |
| 607 | 70.16 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 639 | 70.22 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 690 | 70.32 | humidity | 50 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 780 | 70.48 | radiation | 1 | 90 | < th | dose dependent | sin | 20 | NA |
| 880 | 70.61 | humidity | 80 | 720 | < th | dose dependent | no | NA | NA |
| 885 | 70.62 | humidity | 50 | 720 | > th | dose dependent | no | NA | NA |
| 906 | 70.66 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 11 |
| 921 | 70.69 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 948 | 70.75 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 7 |
| 950 | 70.75 | humidity | 50 | 720 | > th | dose dependent | rect. | 1 | 20 |
| 990 | 70.85 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |