Os07g0558400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chlorophyll a/b-binding protein CP29 precursor.
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Os07g0558400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chlorophyll a/b-binding protein CP29 precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 157.25 | 0.589 | 15.4 | -1.39 | 2.38 | 0.505 | 1.98 | 4.42 | -0.732 | 12.8 | 30.27 | 1168 | -- | -- |
| 158.06 | 0.586 | 15.5 | -2.12 | 2.38 | 1 | 2 | -- | -0.718 | 12.8 | 30.3 | 1172 | -- | -- |
| 173.7 | 0.614 | 15.4 | -1.32 | 2.37 | 0.464 | -- | 4.39 | -0.726 | 12.8 | 30.58 | 1182 | -- | -- |
| 171.4 | 0.61 | 15.5 | -1.94 | 2.27 | 1.03 | -- | -- | -0.851 | 12.6 | 29.75 | 6116 | -- | -- |
| 357.43 | 0.881 | 15.6 | -2.14 | -- | 2.69 | -- | 1.67 | -1.32 | -- | 18.78 | 8 | -- | -- |
| 205.09 | 0.671 | 15.5 | -1.85 | 2.22 | -- | 1.7 | -- | -0.92 | 12.8 | -- | -- | -- | -- |
| 217.4 | 0.69 | 15.5 | -1.79 | 2.22 | -- | -- | -- | -0.911 | 12.8 | -- | -- | -- | -- |
| 358.2 | 0.881 | 15.7 | -2.37 | -- | 2.66 | -- | -- | -1.38 | -- | 20.71 | 2 | -- | -- |
| 269.06 | 0.764 | 15.5 | -- | 2.2 | 0.739 | -- | -- | -0.757 | 12.9 | 33.5 | 7456 | -- | -- |
| 525.58 | 1.07 | 15.6 | -1.87 | -- | -- | -- | -- | -0.952 | -- | -- | -- | -- | -- |
| 301.9 | 0.813 | 15.5 | -- | 2.25 | -- | -- | -- | -0.712 | 12.8 | -- | -- | -- | -- |
| 495.43 | 1.04 | 15.5 | -- | -- | 2.21 | -- | -- | -0.908 | -- | 24.6 | 2 | -- | -- |
| 617.94 | 1.16 | 15.5 | -- | -- | -- | -- | -- | -0.744 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.59 | temperature | 3e+01 | 720 | < th | dose independent | rect. | 17 | 10 |
| 2 | 149.11 | temperature | 1e+01 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 4 | 149.57 | temperature | 1e+01 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 12 | 151.91 | humidity | 7e+01 | 720 | > th | dose independent | rect. | 17 | 4 |
| 18 | 152.45 | temperature | 3e+01 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 19 | 152.75 | temperature | 3e+01 | 720 | < th | dose independent | rect. | 16 | 5 |
| 20 | 152.76 | temperature | 3e+01 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 24 | 153.44 | temperature | 3e+01 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 28 | 153.73 | temperature | 3e+01 | 720 | < th | dose independent | rect. | 17 | 2 |
| 30 | 153.85 | humidity | 7e+01 | 720 | > th | dose independent | rect. | 17 | 10 |
| 62 | 154.01 | temperature | 3e+01 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 78 | 154.02 | temperature | 3e+01 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 85 | 154.06 | temperature | 3e+01 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 106 | 154.11 | atmosphere | 1e+03 | 90 | > th | dose independent | rect. | 19 | 8 |
| 113 | 154.22 | humidity | 8e+01 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 201 | 155.40 | temperature | 3e+01 | 14400 | > th | dose dependent | sin | 12 | NA |
| 204 | 155.47 | temperature | 3e+01 | 720 | < th | dose independent | rect. | 16 | 13 |
| 211 | 155.69 | temperature | 3e+01 | 14400 | > th | dose independent | sin | 13 | NA |
| 212 | 155.69 | humidity | 8e+01 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 214 | 155.81 | temperature | 3e+01 | 14400 | < th | dose independent | sin | 13 | NA |
| 264 | 156.46 | atmosphere | 1e+03 | 10 | > th | dose independent | rect. | 20 | 8 |
| 318 | 157.33 | radiation | 1e+00 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 322 | 157.41 | radiation | 2e+01 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 324 | 157.49 | radiation | 1e+01 | 1440 | > th | dose independent | rect. | 17 | 13 |
| 357 | 157.60 | radiation | 1e+01 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 372 | 157.61 | radiation | 1e+00 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 373 | 157.62 | radiation | 2e+01 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 416 | 157.85 | radiation | 1e+01 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 427 | 158.00 | radiation | 2e+01 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 431 | 158.02 | radiation | 2e+01 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 474 | 158.19 | radiation | 1e+01 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 491 | 158.23 | temperature | 2e+01 | 90 | > th | dose independent | rect. | 3 | 16 |
| 492 | 158.23 | humidity | 8e+01 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 503 | 158.34 | humidity | 7e+01 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 508 | 158.36 | humidity | 7e+01 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 510 | 158.37 | humidity | 7e+01 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 536 | 158.44 | radiation | 1e+01 | 1440 | < th | dose independent | rect. | 17 | 12 |
| 590 | 158.67 | radiation | 1e+01 | 1440 | < th | dose independent | rect. | 17 | 9 |
| 613 | 158.79 | humidity | 7e+01 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 670 | 159.00 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 675 | 159.06 | radiation | 1e+00 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 677 | 159.07 | atmosphere | 1e+03 | 10 | > th | dose independent | rect. | 20 | 18 |
| 683 | 159.10 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 689 | 159.14 | radiation | 3e+01 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 744 | 159.29 | radiation | 1e+00 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 746 | 159.30 | radiation | 1e+01 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 750 | 159.34 | temperature | 3e+01 | 14400 | > th | dose dependent | no | NA | NA |
| 862 | 159.39 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 875 | 159.47 | precipitation | 1e-01 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 891 | 159.47 | precipitation | 1e-01 | 43200 | < th | dose dependent | rect. | 16 | 3 |
| 893 | 159.49 | temperature | 3e+01 | 14400 | > th | dose independent | no | NA | NA |
| 993 | 159.53 | radiation | 1e+01 | 14400 | < th | dose dependent | rect. | 17 | 7 |