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Os04g0457000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chlorophyll a/b-binding protein CP24, photosystem II (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.9 (0.0376) R2 : 0.755
β1 : -2.14 (0.138) R2dD : 0.135 R2D : 0.0285
β2 : 1.12 (0.14) R2dC : 0.0833 R2C : 0.251
β3 : -1.61 (0.119) R2dE : 0.233 R2E : 0.4
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.33 (0.08) R2dN8 : 0.198 R2N8 : 0.108
σ : 0.701
deviance : 226.55
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_____
C
peak time of C : 10.3
E
wheather : atmosphere
threshold : 999.7
memory length : 77
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19.4
open length of G : 7.93

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
224.88 0.705 13.9 -2.17 1.11 -1.63 0.774 0.108 -1.33 10.3 999.8 89 19.3 7.88
224.77 0.698 13.9 -2.15 1.1 -1.64 0.685 -- -1.32 10.3 999.6 79 19.4 7.9
225.58 0.7 13.9 -2.12 1.13 -1.61 -- -0.435 -1.31 10.2 999.7 83 19.3 8
226.55 0.701 13.9 -2.14 1.12 -1.61 -- -- -1.33 10.3 999.7 77 19.4 7.93
270.99 0.767 13.9 -1.96 -- -2.02 -- 0.106 -1.36 -- 1002 32 19.6 8.09
297.92 0.809 13.9 -1.98 2.58 -- 0.278 -- -1.34 11.2 -- -- -- --
298.25 0.809 13.9 -1.97 2.58 -- -- -- -1.34 11.2 -- -- -- --
262.72 0.755 14 -2 -- -2.19 -- -- -1.35 -- 1002 51 19.4 8.13
345.35 0.866 13.8 -- 1.26 -1.43 -- -- -1.09 10.6 999.6 71 19.4 7.97
713.79 1.25 13.9 -2.03 -- -- -- -- -1.36 -- -- -- -- --
400.27 0.936 13.8 -- 2.6 -- -- -- -1.12 11.2 -- -- -- --
384.71 0.914 13.9 -- -- -2.23 -- -- -1.08 -- 999.5 54 19.4 8.12
822.41 1.34 13.9 -- -- -- -- -- -1.13 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 227.91 atmosphere 1000.0 90 > th dose independent rect. 19 8
2 234.22 atmosphere 1000.0 270 > th dose independent rect. 17 9
3 237.07 temperature 15.0 30 > th dose dependent rect. 20 7
5 237.58 atmosphere 995.0 90 > th dose dependent rect. 19 8
6 238.67 atmosphere 1000.0 10 > th dose independent rect. 20 7
7 238.77 temperature 10.0 90 > th dose dependent rect. 3 16
29 244.83 atmosphere 995.0 270 > th dose dependent rect. 17 9
30 245.01 atmosphere 1000.0 30 > th dose independent rect. 9 18
36 245.40 atmosphere 995.0 10 > th dose dependent rect. 20 8
39 245.55 temperature 15.0 90 > th dose independent rect. 19 8
53 247.05 precipitation 0.1 90 < th dose independent rect. 3 16
54 247.05 precipitation 0.1 90 < th dose dependent rect. 3 16
64 247.79 atmosphere 995.0 30 > th dose dependent rect. 9 18
65 248.07 atmosphere 1000.0 10 > th dose independent rect. 20 18
72 248.79 temperature 30.0 90 < th dose independent rect. 19 8
73 248.79 humidity 50.0 90 > th dose independent rect. 19 8
76 248.79 radiation 1.0 90 < th dose independent rect. 19 8
81 248.79 temperature 10.0 90 > th dose independent rect. 3 16
82 248.79 atmosphere 1015.0 90 < th dose independent rect. 3 16
83 248.79 radiation 1.0 90 < th dose dependent rect. 19 8
90 248.96 temperature 30.0 720 < th dose independent rect. 17 10
94 249.11 wind 9.0 90 < th dose independent rect. 19 8
105 249.47 wind 9.0 90 < th dose independent rect. 3 16
107 249.67 radiation 1.0 90 < th dose dependent rect. 5 22
110 249.94 temperature 30.0 14400 > th dose independent rect. 17 1
114 250.35 temperature 30.0 14400 < th dose independent rect. 17 1
116 250.46 humidity 70.0 270 > th dose independent rect. 17 9
118 250.55 radiation 1.0 90 < th dose dependent rect. 17 10
120 250.75 precipitation 0.1 43200 > th dose dependent rect. 17 13
124 250.83 precipitation 0.1 43200 > th dose dependent rect. 7 11
128 250.89 precipitation 0.1 43200 > th dose dependent rect. 6 13
131 250.94 precipitation 0.1 90 < th dose independent rect. 19 8
132 250.94 precipitation 0.1 90 < th dose dependent rect. 19 8
136 251.03 radiation 10.0 270 < th dose independent rect. 16 10
140 251.11 precipitation 0.1 43200 > th dose dependent rect. 9 9
141 251.11 radiation 20.0 270 < th dose dependent rect. 16 10
168 251.66 precipitation 0.1 43200 > th dose dependent rect. 14 5
170 251.79 precipitation 0.1 43200 < th dose independent rect. 17 2
171 251.79 precipitation 0.1 43200 < th dose dependent rect. 17 2
218 252.13 precipitation 0.1 43200 > th dose dependent rect. 2 20
229 252.21 precipitation 0.1 43200 > th dose independent rect. 17 2
234 252.24 temperature 30.0 14400 < th dose independent rect. 17 11
235 252.24 precipitation 0.1 43200 > th dose dependent sin 22 NA
238 252.24 precipitation 0.1 43200 > th dose dependent rect. 16 21
241 252.25 temperature 30.0 14400 > th dose dependent rect. 17 1
257 252.30 temperature 30.0 14400 < th dose independent rect. 17 7
278 252.37 precipitation 0.1 43200 > th dose dependent sin 14 NA
298 252.47 precipitation 0.1 43200 > th dose dependent rect. 23 23
324 252.57 precipitation 0.1 43200 > th dose independent rect. 14 4
329 252.59 temperature 15.0 270 > th dose independent rect. 17 9
344 252.65 precipitation 0.1 43200 > th dose dependent rect. 6 23
348 252.66 radiation 1.0 90 < th dose dependent rect. 13 14
350 252.67 precipitation 0.1 43200 > th dose dependent rect. 19 23
357 252.71 precipitation 0.1 43200 > th dose dependent no NA NA
385 252.83 radiation 1.0 90 < th dose dependent rect. 9 18
463 253.13 radiation 1.0 90 < th dose independent rect. 13 14
498 253.26 atmosphere 1010.0 90 < th dose independent rect. 19 8
503 253.28 radiation 1.0 90 < th dose independent rect. 9 18
515 253.33 temperature 30.0 720 < th dose independent rect. 15 6
534 253.39 radiation 1.0 90 < th dose independent rect. 5 22
563 253.58 wind 7.0 30 < th dose dependent rect. 3 6
568 253.63 atmosphere 1015.0 30 < th dose dependent rect. 14 17
604 253.80 humidity 80.0 14400 > th dose independent rect. 19 2
605 253.80 temperature 10.0 10 > th dose dependent rect. 14 6
622 253.93 atmosphere 1000.0 10 > th dose independent rect. 20 16
640 254.06 atmosphere 995.0 90 > th dose independent rect. 3 16
642 254.10 precipitation 0.1 43200 < th dose independent rect. 16 15
643 254.10 precipitation 0.1 43200 < th dose dependent rect. 16 15
650 254.15 precipitation 0.1 43200 > th dose dependent rect. 19 11
651 254.16 temperature 30.0 720 < th dose independent rect. 15 4
652 254.17 precipitation 0.1 43200 > th dose independent rect. 16 15
683 254.39 radiation 10.0 1440 < th dose independent rect. 17 12
722 254.51 radiation 10.0 1440 < th dose independent rect. 17 7
731 254.62 precipitation 0.1 43200 < th dose independent rect. 6 12
735 254.62 precipitation 0.1 43200 < th dose dependent rect. 6 12
738 254.64 precipitation 0.1 43200 > th dose independent rect. 6 12
744 254.69 temperature 15.0 10 > th dose independent rect. 20 18
745 254.73 wind 9.0 270 < th dose independent rect. 17 9
749 254.75 temperature 30.0 14400 > th dose dependent sin 12 NA
750 254.77 temperature 30.0 720 < th dose independent rect. 17 2
775 254.92 precipitation 0.1 43200 < th dose independent rect. 15 18
776 254.92 precipitation 0.1 43200 < th dose dependent rect. 15 18
787 254.96 radiation 10.0 1440 > th dose dependent rect. 17 13
788 254.98 radiation 10.0 1440 > th dose independent rect. 17 13
797 255.06 humidity 80.0 14400 < th dose independent rect. 19 1
815 255.17 radiation 10.0 1440 > th dose dependent rect. 17 1
829 255.20 radiation 10.0 1440 < th dose independent rect. 17 1
832 255.22 precipitation 0.1 43200 < th dose independent rect. 5 16
834 255.22 precipitation 0.1 43200 < th dose dependent rect. 5 16
835 255.23 humidity 90.0 30 < th dose independent rect. 14 6
847 255.25 temperature 15.0 30 > th dose independent rect. 9 18
919 255.39 precipitation 0.1 43200 > th dose independent rect. 5 16
925 255.40 radiation 10.0 1440 > th dose independent rect. 17 1
937 255.41 temperature 10.0 30 > th dose dependent rect. 3 6
968 255.45 radiation 10.0 4320 < th dose dependent rect. 21 7