BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0557500 Os08g0557500|AK111654
(154 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0557500 Similar to Yarrowia lipolytica chromosome C of... 324 2e-89
Os08g0559400 Similar to Cyclophilin-like protein 176 7e-45
Os06g0130500 Similar to Cyclophilin-like protein PPIL3b 171 2e-43
Os05g0103200 Peptidyl-prolyl cis-trans isomerase, cyclophil... 152 8e-38
Os06g0216800 Similar to Cyclophilin-40 (Expressed protein) 149 9e-37
Os01g0582400 Similar to Multidomain cyclophilin type peptid... 145 1e-35
Os02g0761100 Similar to Cyclophilin-40 (Expressed protein) 144 3e-35
Os02g0121300 Cyclophilin 2 141 2e-34
AK062540 131 2e-31
Os06g0670500 Similar to Multidomain cyclophilin type peptid... 130 4e-31
Os06g0670400 130 4e-31
Os06g0708500 Similar to Cyclophilin 129 9e-31
Os09g0537600 Similar to Cyclophilin-like protein (Single do... 127 3e-30
Os09g0571400 Cyclophilin 1 127 3e-30
Os03g0811600 Similar to Peptidyl prolyl isomerase H 123 4e-29
Os10g0154700 Similar to Cyclophilin Dicyp-2 119 1e-27
Os07g0476500 Peptidyl-prolyl cis-trans isomerase, cyclophil... 92 2e-19
Os11g0602900 Peptidyl-prolyl cis-trans isomerase, cyclophil... 74 3e-14
>Os08g0557500 Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of
Yarrowia lipolytica
Length = 154
Score = 324 bits (830), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MVMHTSMGDIHLRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTG 60
MVMHTSMGDIHLRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTG
Sbjct: 1 MVMHTSMGDIHLRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTG 60
Query: 61 GQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVV 120
GQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVV
Sbjct: 61 GQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVV 120
Query: 121 KGMDVVQQIEKVKTDKNDKPYQDVKILNVTVPKT 154
KGMDVVQQIEKVKTDKNDKPYQDVKILNVTVPKT
Sbjct: 121 KGMDVVQQIEKVKTDKNDKPYQDVKILNVTVPKT 154
>Os08g0559400 Similar to Cyclophilin-like protein
Length = 164
Score = 176 bits (446), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 82/151 (54%), Positives = 105/151 (69%)
Query: 1 MVMHTSMGDIHLRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTG 60
+ + TSMG + +Y + PKT NF R GYYDN+IFHR+IK F++Q GDP G G G
Sbjct: 12 VTLETSMGAFTIEMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIVQGGDPTGTGRG 71
Query: 61 GQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVV 120
G+SI+G +FEDE L+H LSMANAGPNTNGSQFFIT LD KHT+FGRV
Sbjct: 72 GESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHTIFGRVS 131
Query: 121 KGMDVVQQIEKVKTDKNDKPYQDVKILNVTV 151
KGM++V+++ V+TDK+D+P +VKIL V
Sbjct: 132 KGMEIVKRLGSVQTDKSDRPIHEVKILRTVV 162
>Os06g0130500 Similar to Cyclophilin-like protein PPIL3b
Length = 160
Score = 171 bits (433), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 75/151 (49%), Positives = 106/151 (70%)
Query: 1 MVMHTSMGDIHLRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTG 60
+ +HT++GDI ++ ++ P+T ENF C +GYYD IFHR IKGFMIQ GDP G G G
Sbjct: 3 VTLHTNLGDIKCEVFCDQAPRTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKG 62
Query: 61 GQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVV 120
G SIWG++F DEF +SL+H+ +SMAN+GPNTNGSQFFIT P L+ +TVF +V+
Sbjct: 63 GTSIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTVFAKVI 122
Query: 121 KGMDVVQQIEKVKTDKNDKPYQDVKILNVTV 151
G +V+ +EK +T D+P ++++ VT+
Sbjct: 123 HGFEVLDLMEKAQTGPGDRPLAEIRLNRVTI 153
>Os05g0103200 Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain
containing protein
Length = 250
Score = 152 bits (385), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 101/144 (70%), Gaps = 5/144 (3%)
Query: 7 MGDIHLRLYPEECPKTVENFTTHC--RNGY-YDNLIFHRVIKGFMIQTGD-PLGDGTGGQ 62
+G + + LY ++ P+T ENF C G+ Y FHRVIK FMIQ GD G+GTGG+
Sbjct: 99 VGRVVIGLYGDDVPQTAENFRALCTGEKGFGYKGSSFHRVIKDFMIQGGDFDKGNGTGGK 158
Query: 63 SIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKG 122
SI+GR F+DE K L H P +SMANAGPNTNGSQFFI TV TPWLD +H VFG+V++G
Sbjct: 159 SIYGRTFKDENFK-LVHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDGRHVVFGQVIEG 217
Query: 123 MDVVQQIEKVKTDKNDKPYQDVKI 146
MD+V+ IE +TD+ D+P + V I
Sbjct: 218 MDIVKMIESQETDRGDRPKKKVVI 241
>Os06g0216800 Similar to Cyclophilin-40 (Expressed protein)
Length = 396
Score = 149 bits (376), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 100/154 (64%), Gaps = 13/154 (8%)
Query: 8 GDIHLRLYPEECPKTVENFTTHC-----------RNGYYDNLIFHRVIKGFMIQTGD-PL 55
G I + LY P+T ENF C ++ +Y FHRVIKGFM+Q GD
Sbjct: 40 GRIVIELYASVVPRTAENFRALCTGEKGVGAVTGKHLHYKGSCFHRVIKGFMVQGGDITA 99
Query: 56 GDGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTV 115
GDGTGG+SI+G +FEDE + L+H+R LSMAN+GPNTNGSQFFITT TP LD KH V
Sbjct: 100 GDGTGGESIYGLKFEDE-NFVLKHERKGMLSMANSGPNTNGSQFFITTTRTPHLDGKHVV 158
Query: 116 FGRVVKGMDVVQQIEKVKTDKNDKPYQDVKILNV 149
FGRV+KGM VV+ +E + D+P DV+I++
Sbjct: 159 FGRVIKGMGVVRSVEHAPVGEADRPTSDVEIVDC 192
>Os01g0582400 Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans
isomerase
Length = 499
Score = 145 bits (365), Expect = 1e-35, Method: Composition-based stats.
Identities = 72/153 (47%), Positives = 101/153 (66%), Gaps = 2/153 (1%)
Query: 1 MVMHTSMGDIHLRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTG 60
+V+ T+ G + + L+P+E PK V NF C GYYD +FHRVIK F++Q GDP G GTG
Sbjct: 15 VVVQTTAGPLDIELWPKEAPKAVRNFVQLCLEGYYDGTLFHRVIKSFLVQGGDPTGSGTG 74
Query: 61 GQSIWGREFEDEFHKSLRHDRPFTLSMANAG-PNTNGSQFFITTVATPWLDNKHTVFGRV 119
G+SI+G F DEFH LR + ++ ANAG P++NGSQFFI+ WLD K+T+FG+V
Sbjct: 75 GESIYGAPFADEFHTRLRFNHRGLVACANAGTPHSNGSQFFISLDRCDWLDKKNTIFGKV 134
Query: 120 V-KGMDVVQQIEKVKTDKNDKPYQDVKILNVTV 151
+ + + ++TDK+D+P KIL+V V
Sbjct: 135 TGDSIFNLLALADIETDKDDRPVYPQKILSVEV 167
>Os02g0761100 Similar to Cyclophilin-40 (Expressed protein)
Length = 403
Score = 144 bits (363), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 97/154 (62%), Gaps = 13/154 (8%)
Query: 8 GDIHLRLYPEECPKTVENFTTHCRNG-----------YYDNLIFHRVIKGFMIQTGD-PL 55
G I + LY P+T ENF C +Y HR++KGFM+Q GD
Sbjct: 47 GRIVVELYASVAPRTAENFRALCTGEKGVSAATGVPLHYKGSCIHRIVKGFMVQGGDITA 106
Query: 56 GDGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTV 115
GDGTGG+SI+G FEDE + L+H+R LSMANAGP+TNGSQFFITT TP LD KH V
Sbjct: 107 GDGTGGESIYGLNFEDE-NFVLKHERKGMLSMANAGPDTNGSQFFITTTRTPHLDGKHVV 165
Query: 116 FGRVVKGMDVVQQIEKVKTDKNDKPYQDVKILNV 149
FGRV+KGM VV+ +E V ++D+P D+ I++
Sbjct: 166 FGRVIKGMGVVRSMEHVSVGESDRPITDIVIVDC 199
>Os02g0121300 Cyclophilin 2
Length = 172
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 91/138 (65%), Gaps = 12/138 (8%)
Query: 8 GDIHLRLYPEECPKTVENFTTHC-------RNG---YYDNLIFHRVIKGFMIQTGD-PLG 56
G I + LY ++ P+T ENF C ++G +Y FHRVI FM Q GD G
Sbjct: 18 GRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRG 77
Query: 57 DGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVF 116
+GTGG+SI+G +F DE K +HD P LSMANAGPNTNGSQFFI TV WLD KH VF
Sbjct: 78 NGTGGESIYGEKFADEVFK-FKHDSPGILSMANAGPNTNGSQFFICTVPCSWLDGKHVVF 136
Query: 117 GRVVKGMDVVQQIEKVKT 134
GRVV+GMDVV+ IEKV +
Sbjct: 137 GRVVEGMDVVKAIEKVGS 154
>AK062540
Length = 206
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 88/148 (59%), Gaps = 12/148 (8%)
Query: 8 GDIHLRLYPEECPKTVENFTTHCRNG----------YYDNLIFHRVIKGFMIQTGDPL-G 56
G + + LY + PKTVENF C +Y FHR+I FMIQ GD G
Sbjct: 44 GRVVMGLYGKTVPKTVENFRALCTGEKGMGKKGKPLHYKGSTFHRIIPNFMIQGGDFTDG 103
Query: 57 DGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVF 116
+G GG+SI+G +FEDE K L+H LSMANAG NTNGSQFFI TV T WLD +H VF
Sbjct: 104 NGMGGESIYGEKFEDENFK-LKHTGEGVLSMANAGANTNGSQFFICTVKTSWLDGRHVVF 162
Query: 117 GRVVKGMDVVQQIEKVKTDKNDKPYQDV 144
GRV+ GMD+++ +E V + Q V
Sbjct: 163 GRVISGMDIIKAVEAVGSGGGTPSEQVV 190
>Os06g0670500 Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans
isomerase
Length = 564
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 98/159 (61%), Gaps = 8/159 (5%)
Query: 1 MVMHTSMGDIHLRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTG 60
+++ TS+GDI + L+ + CP T +NF C+ YY+ +FH+V K F+ QTGDP G G G
Sbjct: 3 VLIVTSVGDIEVDLHTDMCPLTTKNFLKLCKMKYYNGCLFHKVEKDFLAQTGDPTGTGAG 62
Query: 61 GQSIW-------GREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTV-ATPWLDNK 112
G S++ R F+DE LRH + T++MA+AG N N SQF+IT +LD+K
Sbjct: 63 GDSVYKFLYGDQARFFDDEIRPDLRHSKKGTIAMASAGENCNASQFYITLRDDVDYLDDK 122
Query: 113 HTVFGRVVKGMDVVQQIEKVKTDKNDKPYQDVKILNVTV 151
HTVFG V +G D + +I + D +P++D++I + V
Sbjct: 123 HTVFGMVAEGFDTLTKISETYVDDKGRPFKDIRIKHTYV 161
>Os06g0670400
Length = 521
Score = 130 bits (326), Expect = 4e-31, Method: Composition-based stats.
Identities = 64/155 (41%), Positives = 95/155 (61%), Gaps = 8/155 (5%)
Query: 5 TSMGDIHLRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSI 64
TS+GDI + L+ + CP T +NF C+ YY+ +FH++ K F+ QTGD G G GG S+
Sbjct: 7 TSVGDIEVDLHTDMCPLTTKNFLKLCKMKYYNGCLFHKIEKDFLAQTGDSTGTGAGGDSV 66
Query: 65 W-------GREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTV-ATPWLDNKHTVF 116
+ R F+DE H LRH + T++MA+AG N N SQF+IT +LD+KHTVF
Sbjct: 67 YKFLYGDQARFFDDEIHPELRHSKMGTIAMASAGENCNASQFYITLRDGVDYLDDKHTVF 126
Query: 117 GRVVKGMDVVQQIEKVKTDKNDKPYQDVKILNVTV 151
G V +G D + +I + D +P++D++I + V
Sbjct: 127 GMVAEGFDTITKINETYVDDKGRPFKDIRIRHTYV 161
>Os06g0708500 Similar to Cyclophilin
Length = 249
Score = 129 bits (324), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 95/152 (62%), Gaps = 13/152 (8%)
Query: 8 GDIHLRLYPEECPKTVENFTTHC-------RNG---YYDNLIFHRVIKGFMIQTGD-PLG 56
G + + L+ + PKT ENF C ++G ++ FHR+I FMIQ GD LG
Sbjct: 94 GRVVMGLFGKTVPKTAENFRALCTGEKGTGKSGKALHFKGSAFHRIIPSFMIQGGDFTLG 153
Query: 57 DGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVF 116
DG GG+SI+G +F DE K ++H P LSMANAG +TNGSQFFITTV T WLD KH VF
Sbjct: 154 DGRGGESIYGTKFADENFK-IKHTGPGLLSMANAGRDTNGSQFFITTVTTSWLDGKHVVF 212
Query: 117 GRVVKGMDVVQQIEKVKTDKNDKPYQDVKILN 148
G+V+ GMDVV +IE + ++ P V I +
Sbjct: 213 GKVLSGMDVVYKIE-AEGQQSGSPKSKVVIAD 243
>Os09g0537600 Similar to Cyclophilin-like protein (Single domain cyclophilin type
peptidyl- prolyl cis-trans isomerase)
Length = 215
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 97/159 (61%), Gaps = 13/159 (8%)
Query: 7 MGDIHLRLYPEECPKTVENFTTHC----------RNGYYDNLIFHRVIKGFMIQTGDPL- 55
+G I + LY + PKTV NF C ++ +Y FHR+I GFMIQ GD +
Sbjct: 51 IGRIVIGLYGDVVPKTVANFRALCTGEEGIGHKGKSLHYKGSRFHRIIPGFMIQGGDIVR 110
Query: 56 GDGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTV 115
GDG G +SI+G F DE + ++H P ++MAN+GP++NGSQF+ITT+ T WLD +H V
Sbjct: 111 GDGKGSESIYGGTFPDE-NFIVKHTHPGVIAMANSGPDSNGSQFYITTIKTSWLDGEHVV 169
Query: 116 FGRVVKGMDVVQQIEKVKTDKNDKPYQDVKILNV-TVPK 153
FGRV++GMD V IE N KP + V I + +PK
Sbjct: 170 FGRVIQGMDYVYAIEGGAGTYNGKPRKKVVITDSGEIPK 208
>Os09g0571400 Cyclophilin 1
Length = 179
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/145 (47%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 1 MVMHTSMGDIHLRLYPEECPKTVENFTTHCRNG----------YYDNLIFHRVIKGFMIQ 50
++ G + + L+ + PKT ENF C +Y FHR+I FM Q
Sbjct: 13 LIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRIIPNFMCQ 72
Query: 51 TGD-PLGDGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWL 109
GD G+GTGG+SI+G F DE K LRH P LSMANAGPNTNGSQFFI T T WL
Sbjct: 73 GGDFTRGNGTGGESIYGDRFADENFK-LRHTGPGVLSMANAGPNTNGSQFFICTTRTTWL 131
Query: 110 DNKHTVFGRVVKGMDVVQQIEKVKT 134
D KH VFG+VV G VV+++E+V +
Sbjct: 132 DGKHVVFGKVVDGYTVVEKMEQVGS 156
>Os03g0811600 Similar to Peptidyl prolyl isomerase H
Length = 204
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 88/143 (61%), Gaps = 11/143 (7%)
Query: 8 GDIHLRLYPEECPKTVENFTTHCRNGY--------YDNLIFHRVIKGFMIQTGDPL-GDG 58
G I + L+ + PKT ENF C + Y FHRVIK FMIQ GD + GDG
Sbjct: 51 GRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFHRVIKDFMIQGGDYMKGDG 110
Query: 59 TGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGR 118
TG SI+G +F+DE + +H P LSMAN+G N+NGSQFFIT WLDNKH VFGR
Sbjct: 111 TGCTSIYGTKFDDENFIA-KHTGPGLLSMANSGVNSNGSQFFITCAKCEWLDNKHVVFGR 169
Query: 119 VV-KGMDVVQQIEKVKTDKNDKP 140
V+ GM V++IE V T N++P
Sbjct: 170 VLGDGMLAVRKIENVATGPNNRP 192
>Os10g0154700 Similar to Cyclophilin Dicyp-2
Length = 181
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 84/142 (59%), Gaps = 15/142 (10%)
Query: 7 MGDIHLRLYPEECPKTVENFTTHC------RNG----YYDNLIFHRVIKGFMIQTGD-PL 55
+G + + L ++ P T ENF C R+G +Y FHRV+ GFM Q GD
Sbjct: 24 VGRVVIELLADKVPDTAENFRRLCTGERAGRSGKSRLHYKGSAFHRVVPGFMCQGGDITA 83
Query: 56 GDGTGGQSIW---GREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNK 112
G+GTGG+S R F DE +++HD P +SMANAGPNTNGSQFFIT PWLD +
Sbjct: 84 GNGTGGESALDGAARHFPDEGF-AVKHDGPGVVSMANAGPNTNGSQFFITVDKAPWLDGR 142
Query: 113 HTVFGRVVKGMDVVQQIEKVKT 134
H FGRVV GM V+ I++ T
Sbjct: 143 HVAFGRVVAGMGAVRAIDRTGT 164
>Os07g0476500 Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain
containing protein
Length = 235
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Query: 2 VMHTSMGDIHLRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGG 61
V+ T+ G I + +Y + V+ F + C++ ++ + F VIK F+IQ GD +G
Sbjct: 82 VIDTAKGSITIEIYKDASADVVDRFVSLCKSNHFKGMPFRHVIKNFVIQGGDFDFNGAAQ 141
Query: 62 QSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVK 121
+ I + E S +H+ + N PN G FITT P L++K VFG+V+
Sbjct: 142 EWILKAKASGENALSPKHEAFMIGTTKN--PNNKGFDLFITTAPIPDLNDKLVVFGQVIN 199
Query: 122 GMDVVQQIEKVKTDKNDKPYQDVKILNVTV 151
G D+VQ+IE+V TD++ +P + ILN+T+
Sbjct: 200 GQDIVQEIEEVDTDEHYQPKTPIGILNITL 229
>Os11g0602900 Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain
containing protein
Length = 235
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 1 MVMHTSMGDIHLRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTG 60
+V T+ GDI +P PKTVE+ R G Y+ F RV KGF+ Q +G G
Sbjct: 43 VVFQTTHGDIEFGFFPHVAPKTVEHIYKLVRLGCYNTNHFFRVDKGFVAQVASVVG---G 99
Query: 61 GQSIWGREFEDEFHKSL-------RHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKH 113
+ E ++E KS+ +H R ++ PN+ GS F I P LD ++
Sbjct: 100 RTAPMNDEQQEEAEKSVVGEFSTVKHVRGILSMGRHSDPNSGGSSFSILLGDAPHLDGQY 159
Query: 114 TVFGRVVKGMDVVQQIEKVKTDKND---KPYQDVKILN 148
VFGR+ KG D ++++E++ T + P + + IL+
Sbjct: 160 AVFGRLTKGDDTLRKLEQLPTRREGIFVMPIERISILS 197
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,896,601
Number of extensions: 260397
Number of successful extensions: 481
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 446
Number of HSP's successfully gapped: 18
Length of query: 154
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 62
Effective length of database: 12,232,113
Effective search space: 758391006
Effective search space used: 758391006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)