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Os02g0761100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cyclophilin-40 (Expressed protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.72 (0.0193) R2 : 0.0291
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.15 (0.0407) R2dN8 : 0.0376 R2N8 : 0.0291
σ : 0.364
deviance : 60.85
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
40.51 0.299 7.71 0.416 0.557 -0.283 -0.594 1.89 0.262 16.6 30.33 4832 -- --
43.88 0.309 7.7 0.255 0.509 -0.201 -0.473 -- 0.26 16.4 34.32 29186 -- --
41.39 0.3 7.71 0.403 0.546 -0.27 -- 1.82 0.255 16.4 30.32 4788 -- --
42.12 0.302 7.74 -0.11 0.518 -0.524 -- -- 0.0821 16.5 39.99 47520 -- --
55.94 0.348 7.7 0.373 -- -0.261 -- 1.37 0.275 -- 32.55 5667 -- --
45.72 0.317 7.72 0.227 0.508 -- -0.412 -- 0.189 16.6 -- -- -- --
46.14 0.318 7.72 0.225 0.504 -- -- -- 0.187 16.5 -- -- -- --
56.11 0.349 7.73 -0.116 -- -0.511 -- -- 0.0921 -- 38.99 47520 -- --
42.2 0.303 7.73 -- 0.513 -0.47 -- -- 0.132 16.5 36.26 47520 -- --
59.74 0.361 7.71 0.205 -- -- -- -- 0.173 -- -- -- -- --
47.48 0.322 7.72 -- 0.5 -- -- -- 0.162 16.5 -- -- -- --
56.21 0.349 7.73 -- -- -0.441 -- -- 0.122 -- 36.22 47520 -- --
60.85 0.364 7.72 -- -- -- -- -- 0.15 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.21 humidity 50 43200 < th dose dependent rect. 16 18
2 38.31 humidity 50 43200 > th dose independent rect. 16 19
3 38.33 humidity 70 43200 > th dose independent rect. 19 14
4 38.34 humidity 50 43200 < th dose dependent rect. 16 15
5 38.35 humidity 50 43200 < th dose dependent rect. 16 4
20 38.41 temperature 15 14400 > th dose independent rect. 7 4
26 38.50 humidity 50 43200 < th dose independent rect. 16 19
31 38.56 temperature 15 14400 > th dose independent rect. 6 7
40 38.64 humidity 50 43200 < th dose independent rect. 17 14
42 38.65 humidity 70 43200 < th dose independent rect. 19 13
44 38.66 humidity 50 43200 < th dose independent rect. 17 17
52 38.73 temperature 15 14400 < th dose independent rect. 8 3
54 38.75 humidity 50 43200 > th dose independent sin 11 NA
55 38.75 temperature 15 14400 < th dose independent rect. 5 7
60 38.79 humidity 50 43200 > th dose independent rect. 17 14
62 38.79 humidity 70 43200 < th dose dependent rect. 18 17
63 38.81 humidity 50 43200 < th dose independent rect. 17 3
66 38.82 humidity 70 43200 < th dose dependent rect. 19 1
70 38.84 humidity 50 43200 > th dose independent rect. 17 3
86 38.90 humidity 50 43200 < th dose independent sin 11 NA
93 38.93 humidity 50 43200 > th dose independent rect. 17 7
104 38.95 humidity 50 43200 > th dose independent rect. 17 9
112 38.98 radiation 30 43200 > th dose independent rect. 7 1
129 38.98 humidity 70 43200 < th dose dependent sin 8 NA
132 38.99 humidity 50 43200 > th dose independent rect. 15 8
149 39.04 humidity 60 43200 < th dose dependent sin 11 NA
179 39.18 humidity 70 43200 < th dose dependent rect. 9 2
190 39.24 humidity 60 43200 < th dose independent rect. 18 19
193 39.26 temperature 15 14400 > th dose independent rect. 21 3
221 39.30 temperature 15 14400 < th dose independent rect. 21 4
228 39.32 radiation 40 43200 > th dose dependent rect. 14 2
252 39.35 humidity 60 43200 > th dose independent sin 8 NA
260 39.37 humidity 90 43200 < th dose independent rect. 24 1
268 39.39 humidity 70 43200 < th dose independent rect. 19 3
273 39.40 temperature 15 14400 < th dose independent sin 1 NA
274 39.40 radiation 40 43200 < th dose independent rect. 8 1
277 39.40 humidity 60 43200 > th dose independent rect. 18 19
291 39.43 temperature 15 14400 < th dose independent rect. 8 19
293 39.44 temperature 15 14400 < th dose independent rect. 24 1
301 39.46 humidity 60 43200 < th dose independent sin 7 NA
308 39.47 temperature 15 14400 > th dose independent rect. 7 20
309 39.47 radiation 40 43200 > th dose dependent rect. 8 1
328 39.51 radiation 30 4320 < th dose independent rect. 11 1
345 39.53 radiation 10 43200 < th dose dependent rect. 17 13
405 39.59 humidity 50 43200 < th dose dependent rect. 9 1
414 39.61 temperature 15 14400 < th dose dependent rect. 4 6
422 39.63 humidity 70 43200 > th dose independent rect. 19 4
428 39.63 radiation 20 43200 > th dose dependent rect. 6 2
454 39.65 radiation 1 43200 > th dose dependent rect. 17 12
472 39.68 temperature 15 14400 < th dose independent rect. 21 16
473 39.68 radiation 1 43200 > th dose dependent rect. 17 2
510 39.70 temperature 15 14400 < th dose independent rect. 21 20
551 39.75 radiation 20 43200 < th dose dependent rect. 17 1
554 39.76 temperature 15 14400 > th dose independent sin 23 NA
555 39.76 humidity 50 43200 < th dose independent rect. 15 7
581 39.78 temperature 15 14400 > th dose independent rect. 24 1
590 39.78 radiation 40 43200 < th dose independent rect. 23 10
631 39.80 radiation 20 43200 < th dose dependent rect. 22 8
666 39.82 temperature 15 14400 < th dose independent rect. 24 23
669 39.82 radiation 20 43200 < th dose dependent rect. 4 2
694 39.84 radiation 1 14400 > th dose independent rect. 8 2
716 39.85 radiation 40 43200 < th dose independent rect. 16 11
728 39.85 radiation 40 4320 < th dose dependent rect. 18 8
729 39.85 radiation 40 43200 < th dose dependent rect. 17 9
734 39.86 radiation 1 14400 < th dose independent rect. 8 2
743 39.86 temperature 15 14400 < th dose independent rect. 2 23
756 39.87 temperature 15 14400 < th dose independent no NA NA
798 39.89 radiation 20 43200 < th dose dependent rect. 17 4
799 39.89 radiation 20 43200 < th dose dependent rect. 17 6
817 39.90 temperature 15 14400 < th dose dependent rect. 9 2
841 39.91 humidity 90 43200 > th dose independent rect. 24 1
895 39.93 temperature 15 14400 < th dose dependent sin 1 NA
913 39.94 temperature 15 14400 < th dose independent rect. 24 13
914 39.94 temperature 15 14400 < th dose independent rect. 24 17
996 39.97 radiation 40 43200 > th dose independent rect. 14 19