FiT-DB / Search/ Help/ Sample detail

Os02g0121300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclophilin 2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 17 (0.0117) R2 : 0.588
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.598 (0.0297) R2dC : 0.367 R2C : 0.321
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.372 (0.0246) R2dN8 : 0.267 R2N8 : 0.221
σ : 0.22
deviance : 22.18
__
_____
C
peak time of C : 15.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
19.67 0.208 17 0.168 0.573 0.415 0.363 0.993 -0.41 16.1 9.027 4481 -- --
20.27 0.21 17 0.15 0.538 0.312 0.397 -- -0.395 15.9 9.098 4518 -- --
20.01 0.208 17 0.172 0.573 0.415 -- 1.02 -0.411 16 9.034 4511 -- --
20.58 0.211 17 0.139 0.568 0.308 -- -- -0.393 16 9.106 4511 -- --
37.23 0.284 17 0.181 -- 0.498 -- 0.982 -0.449 -- 9 4612 -- --
21.77 0.219 17 0.0297 0.597 -- 0.359 -- -0.37 15.8 -- -- -- --
22.15 0.22 17 0.035 0.598 -- -- -- -0.368 15.8 -- -- -- --
38.3 0.288 17 0.137 -- 0.377 -- -- -0.417 -- 9.1 4620 -- --
20.83 0.213 17 -- 0.579 0.224 -- -- -0.382 15.9 9 4503 -- --
41.94 0.303 17 0.0101 -- -- -- -- -0.384 -- -- -- -- --
22.18 0.22 17 -- 0.598 -- -- -- -0.372 15.8 -- -- -- --
38.66 0.29 17 -- -- 0.338 -- -- -0.429 -- 9.191 4620 -- --
41.94 0.302 17 -- -- -- -- -- -0.385 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 18.12 wind 7.0 720 < th dose independent rect. 17 2
3 18.41 wind 7.0 270 < th dose independent rect. 15 14
4 18.48 wind 7.0 270 < th dose independent rect. 5 10
8 18.51 temperature 15.0 270 > th dose independent rect. 5 10
9 18.54 precipitation 0.1 270 < th dose independent rect. 5 10
10 18.54 precipitation 0.1 270 < th dose dependent rect. 5 10
11 18.57 wind 5.0 90 < th dose independent rect. 17 13
13 18.59 atmosphere 995.0 270 > th dose independent rect. 5 10
14 18.59 atmosphere 1015.0 270 < th dose independent rect. 5 10
15 18.59 temperature 10.0 270 > th dose independent rect. 15 14
16 18.59 radiation 40.0 270 < th dose independent rect. 15 14
17 18.62 wind 9.0 720 < th dose independent rect. 7 22
18 18.66 radiation 20.0 720 < th dose independent rect. 17 2
19 18.67 precipitation 0.1 720 < th dose independent rect. 5 2
20 18.67 precipitation 0.1 720 < th dose dependent rect. 5 2
21 18.68 wind 9.0 720 < th dose dependent rect. 17 2
22 18.71 temperature 10.0 720 > th dose independent rect. 17 2
23 18.71 atmosphere 1015.0 720 < th dose independent rect. 17 2
26 18.71 temperature 10.0 720 > th dose independent rect. 19 22
28 18.74 precipitation 0.1 720 < th dose independent rect. 17 2
29 18.74 precipitation 0.1 720 < th dose dependent rect. 17 2
30 18.74 temperature 10.0 90 > th dose dependent rect. 17 13
31 18.75 wind 7.0 720 < th dose independent rect. 5 2
33 18.75 temperature 10.0 720 > th dose independent rect. 5 2
34 18.75 temperature 30.0 720 < th dose independent rect. 5 2
35 18.75 humidity 50.0 720 > th dose independent rect. 5 2
37 18.75 atmosphere 995.0 720 > th dose independent rect. 5 2
38 18.75 atmosphere 1015.0 720 < th dose independent rect. 5 2
39 18.75 radiation 20.0 720 < th dose independent rect. 5 2
43 18.75 temperature 10.0 720 > th dose independent rect. 7 22
44 18.75 radiation 40.0 720 < th dose dependent rect. 17 2
49 18.80 temperature 10.0 10 > th dose dependent rect. 18 12
51 18.82 humidity 50.0 720 > th dose independent rect. 17 2
52 18.82 precipitation 0.1 270 < th dose independent rect. 15 14
54 18.82 precipitation 0.1 270 < th dose dependent rect. 15 14
62 18.87 humidity 50.0 90 > th dose dependent rect. 18 1
66 18.89 temperature 10.0 270 > th dose dependent rect. 15 14
70 18.91 temperature 25.0 90 > th dose independent rect. 18 1
72 18.92 wind 1.0 90 > th dose independent rect. 5 12
75 18.92 atmosphere 1000.0 30 > th dose independent rect. 19 23
79 18.94 wind 9.0 720 < th dose independent rect. 17 10
83 18.94 temperature 25.0 10 > th dose independent rect. 18 12
86 18.95 wind 5.0 90 < th dose independent rect. 18 1
88 18.96 humidity 60.0 10 > th dose independent rect. 18 1
90 18.96 radiation 1.0 30 < th dose independent rect. 18 1
91 18.96 radiation 1.0 10 < th dose dependent rect. 18 1
96 18.97 wind 1.0 30 > th dose dependent rect. 18 1
97 18.98 wind 1.0 720 > th dose independent rect. 17 2
98 18.98 precipitation 0.1 720 < th dose independent rect. 19 22
103 18.98 radiation 1.0 30 < th dose dependent rect. 4 16
104 18.98 precipitation 0.1 720 < th dose dependent rect. 19 22
105 18.99 wind 1.0 30 > th dose independent rect. 18 1
106 18.99 temperature 10.0 30 > th dose independent rect. 18 1
111 18.99 humidity 90.0 30 < th dose independent rect. 18 1
112 18.99 atmosphere 995.0 30 > th dose independent rect. 18 1
114 18.99 atmosphere 1010.0 30 < th dose independent rect. 18 1
116 18.99 radiation 20.0 30 < th dose independent rect. 18 1
119 18.99 precipitation 0.1 30 < th dose independent rect. 18 1
120 18.99 temperature 10.0 30 > th dose independent rect. 19 23
126 18.99 precipitation 0.1 30 < th dose dependent rect. 18 1
132 19.00 atmosphere 995.0 30 > th dose dependent rect. 18 1
134 19.00 atmosphere 1015.0 30 < th dose dependent rect. 18 1
135 19.00 temperature 10.0 720 > th dose dependent rect. 17 2
139 19.01 wind 5.0 30 < th dose dependent rect. 18 1
140 19.01 temperature 10.0 30 > th dose dependent rect. 18 1
144 19.02 wind 9.0 30 < th dose independent rect. 18 1
162 19.03 wind 9.0 90 < th dose independent rect. 19 23
166 19.03 humidity 90.0 30 < th dose dependent rect. 18 1
191 19.06 temperature 25.0 720 > th dose independent rect. 18 1
192 19.06 temperature 30.0 90 < th dose independent rect. 18 1
196 19.07 temperature 30.0 10 < th dose independent rect. 18 1
202 19.07 temperature 30.0 30 < th dose dependent rect. 18 1
218 19.10 radiation 10.0 90 < th dose independent rect. 17 13
225 19.11 temperature 10.0 1440 > th dose independent rect. 19 1
228 19.11 temperature 30.0 1440 < th dose independent rect. 19 1
232 19.11 humidity 50.0 1440 > th dose independent rect. 19 1
234 19.11 atmosphere 995.0 1440 > th dose independent rect. 19 1
238 19.11 radiation 1.0 1440 < th dose independent rect. 19 1
264 19.11 radiation 1.0 1440 < th dose dependent rect. 19 1
274 19.11 radiation 30.0 90 < th dose dependent rect. 17 13
280 19.12 precipitation 0.1 720 < th dose independent rect. 3 14
289 19.12 radiation 40.0 720 < th dose dependent rect. 5 2
292 19.12 precipitation 0.1 720 < th dose dependent rect. 3 14
308 19.14 temperature 10.0 90 > th dose independent rect. 17 13
312 19.14 temperature 15.0 10 > th dose independent rect. 12 14
316 19.14 wind 9.0 720 < th dose dependent rect. 24 5
330 19.15 precipitation 0.1 30 < th dose independent rect. 19 23
332 19.15 temperature 20.0 90 > th dose dependent rect. 4 1
339 19.15 precipitation 0.1 30 < th dose dependent rect. 19 23
352 19.17 humidity 50.0 270 > th dose independent rect. 5 10
353 19.17 atmosphere 995.0 270 > th dose independent rect. 15 14
354 19.18 wind 9.0 10 < th dose independent rect. 6 12
357 19.18 radiation 40.0 90 < th dose dependent rect. 15 14
367 19.20 humidity 50.0 90 > th dose independent rect. 17 13
368 19.20 radiation 1.0 90 < th dose independent rect. 3 16
370 19.21 atmosphere 995.0 90 > th dose independent rect. 17 13
371 19.21 wind 9.0 10 < th dose independent rect. 12 14
381 19.22 atmosphere 1015.0 270 < th dose independent rect. 15 14
387 19.23 radiation 10.0 10 < th dose independent rect. 18 12
396 19.25 wind 9.0 90 < th dose dependent rect. 17 13
398 19.26 wind 1.0 720 > th dose independent rect. 5 2
399 19.26 temperature 10.0 10 > th dose independent rect. 2 10
401 19.26 atmosphere 995.0 10 > th dose independent rect. 2 10
402 19.26 atmosphere 1015.0 10 < th dose independent rect. 2 10
437 19.27 radiation 20.0 720 < th dose independent rect. 17 10
438 19.27 precipitation 0.1 30 < th dose independent rect. 2 10
446 19.27 wind 9.0 720 < th dose independent rect. 7 14
451 19.27 precipitation 0.1 30 < th dose dependent rect. 2 10
455 19.28 humidity 60.0 10 > th dose independent rect. 18 12
456 19.28 temperature 15.0 270 > th dose independent rect. 11 13
464 19.29 atmosphere 995.0 10 > th dose independent rect. 6 12
466 19.29 precipitation 0.1 30 < th dose independent rect. 12 14
468 19.29 radiation 30.0 10 < th dose dependent rect. 17 13
470 19.29 precipitation 0.1 30 < th dose dependent rect. 12 14
472 19.30 wind 9.0 10 < th dose independent rect. 2 10
475 19.30 temperature 10.0 720 > th dose independent rect. 17 10
481 19.30 temperature 10.0 10 > th dose independent rect. 6 12
483 19.30 temperature 10.0 10 > th dose independent rect. 18 12
485 19.30 atmosphere 1015.0 10 < th dose independent rect. 6 12
489 19.30 precipitation 0.1 10 < th dose independent rect. 6 12
490 19.30 temperature 10.0 720 > th dose independent rect. 3 14
492 19.30 wind 7.0 720 < th dose independent rect. 17 19
493 19.30 precipitation 0.1 10 < th dose dependent rect. 6 12
495 19.31 wind 9.0 720 < th dose independent rect. 9 10
508 19.32 atmosphere 995.0 10 > th dose independent rect. 18 12
510 19.32 humidity 50.0 30 > th dose independent rect. 19 23
514 19.33 temperature 10.0 1440 > th dose independent rect. 3 10
517 19.33 atmosphere 995.0 1440 > th dose independent rect. 3 10
520 19.33 atmosphere 1015.0 90 < th dose independent rect. 17 13
522 19.33 temperature 10.0 1440 > th dose independent rect. 13 14
527 19.33 wind 5.0 90 < th dose independent rect. 2 18
538 19.35 radiation 1.0 270 > th dose independent rect. 5 10
542 19.35 temperature 30.0 720 < th dose independent rect. 19 14
543 19.35 atmosphere 1015.0 720 < th dose independent rect. 3 14
552 19.35 wind 9.0 30 < th dose dependent rect. 2 10
557 19.35 wind 7.0 90 < th dose dependent rect. 2 18
558 19.36 temperature 10.0 720 > th dose independent rect. 21 10
559 19.36 temperature 30.0 720 < th dose independent rect. 21 10
560 19.36 humidity 50.0 720 > th dose independent rect. 21 10
562 19.36 atmosphere 995.0 720 > th dose independent rect. 21 10
563 19.36 radiation 30.0 720 < th dose independent rect. 21 10
566 19.36 wind 1.0 10 > th dose independent rect. 6 12
568 19.36 atmosphere 1015.0 10 < th dose independent rect. 18 12
569 19.36 temperature 10.0 720 > th dose independent rect. 7 14
579 19.37 humidity 70.0 720 > th dose independent rect. 19 5
593 19.37 precipitation 0.1 90 < th dose independent rect. 17 13
595 19.37 atmosphere 1015.0 720 < th dose independent rect. 7 14
601 19.37 precipitation 0.1 90 < th dose dependent rect. 17 13
605 19.38 precipitation 0.1 10 < th dose independent rect. 18 12
606 19.38 wind 1.0 270 > th dose independent rect. 15 13
609 19.38 precipitation 0.1 10 < th dose dependent rect. 18 12
612 19.39 wind 3.0 90 < th dose independent rect. 4 1
614 19.39 precipitation 0.1 720 < th dose independent rect. 12 5
616 19.39 precipitation 0.1 270 < th dose independent rect. 24 11
617 19.39 humidity 50.0 270 > th dose independent rect. 15 14
622 19.39 precipitation 0.1 720 < th dose dependent rect. 12 5
623 19.39 precipitation 0.1 270 < th dose dependent rect. 24 11
629 19.40 radiation 1.0 720 > th dose independent rect. 6 1
630 19.40 temperature 10.0 720 > th dose independent rect. 9 10
631 19.40 atmosphere 1015.0 720 < th dose independent rect. 9 10
633 19.40 temperature 10.0 270 > th dose independent rect. 24 11
634 19.40 atmosphere 995.0 270 > th dose independent rect. 24 11
635 19.40 atmosphere 1015.0 270 < th dose independent rect. 24 11
636 19.40 humidity 90.0 90 < th dose independent rect. 5 12
639 19.40 temperature 10.0 720 > th dose independent rect. 19 14
640 19.40 humidity 50.0 720 > th dose independent rect. 19 14
641 19.40 atmosphere 995.0 720 > th dose independent rect. 19 14
643 19.40 temperature 15.0 270 > th dose independent rect. 19 20
644 19.40 wind 9.0 720 < th dose dependent rect. 5 2
645 19.40 temperature 10.0 10 > th dose dependent rect. 6 11
648 19.41 temperature 15.0 720 > th dose independent rect. 12 5
652 19.41 humidity 70.0 720 > th dose independent rect. 19 12
657 19.41 temperature 10.0 270 > th dose dependent rect. 5 10
662 19.42 wind 9.0 270 < th dose independent rect. 24 11
668 19.42 temperature 15.0 90 > th dose independent rect. 5 23
674 19.43 temperature 20.0 90 > th dose independent rect. 4 1
683 19.43 atmosphere 995.0 10 > th dose independent rect. 12 14
686 19.43 radiation 40.0 270 < th dose independent rect. 24 19
687 19.43 wind 5.0 90 < th dose dependent rect. 4 1
699 19.44 radiation 40.0 270 < th dose independent rect. 9 10
714 19.44 temperature 20.0 10 > th dose dependent rect. 4 2
720 19.44 radiation 40.0 30 < th dose dependent rect. 11 19
724 19.45 atmosphere 1005.0 90 > th dose independent rect. 4 1
725 19.45 temperature 25.0 270 > th dose independent rect. 15 4
731 19.45 temperature 20.0 10 > th dose dependent rect. 2 4
733 19.45 radiation 40.0 720 < th dose dependent rect. 17 10
744 19.46 wind 9.0 270 < th dose independent rect. 11 13
759 19.47 wind 9.0 720 < th dose independent rect. 21 10
762 19.47 humidity 50.0 270 > th dose independent rect. 24 11
771 19.47 precipitation 0.1 270 < th dose independent rect. 11 13
779 19.47 precipitation 0.1 270 < th dose dependent rect. 11 13
785 19.47 radiation 1.0 30 < th dose dependent rect. 4 19
791 19.48 wind 9.0 90 < th dose independent rect. 5 23
795 19.48 atmosphere 1000.0 90 > th dose dependent rect. 4 1
796 19.48 radiation 1.0 90 < th dose dependent rect. 4 1
797 19.48 temperature 10.0 270 > th dose dependent rect. 15 4
829 19.50 temperature 10.0 1440 > th dose independent rect. 6 12
833 19.50 temperature 10.0 1440 > th dose independent rect. 18 12
836 19.50 humidity 50.0 1440 > th dose independent rect. 18 12
838 19.50 radiation 20.0 1440 < th dose independent rect. 18 12
855 19.51 radiation 1.0 90 < th dose independent rect. 4 1
857 19.51 wind 7.0 720 < th dose independent rect. 24 5
861 19.51 humidity 50.0 10 > th dose independent rect. 12 14
864 19.51 wind 7.0 4320 > th dose dependent rect. 15 1
878 19.52 precipitation 0.1 90 < th dose independent rect. 4 1
881 19.52 precipitation 0.1 720 < th dose independent rect. 21 10
886 19.52 wind 9.0 720 < th dose independent rect. 24 19
892 19.52 precipitation 0.1 90 < th dose dependent rect. 4 1
894 19.52 precipitation 0.1 720 < th dose dependent rect. 21 10
898 19.53 temperature 10.0 90 > th dose independent rect. 4 1
900 19.53 temperature 30.0 90 < th dose independent rect. 4 1
901 19.53 humidity 50.0 90 > th dose independent rect. 4 1
905 19.53 atmosphere 995.0 90 > th dose independent rect. 4 1
906 19.53 atmosphere 1010.0 90 < th dose independent rect. 4 1
912 19.53 wind 3.0 720 < th dose independent rect. 1 3
914 19.53 atmosphere 1015.0 720 < th dose independent rect. 12 5
915 19.53 humidity 50.0 720 > th dose independent rect. 17 10
916 19.53 radiation 40.0 270 < th dose independent rect. 24 11
919 19.53 wind 9.0 720 < th dose independent rect. 19 14
925 19.53 temperature 10.0 720 > th dose independent rect. 17 19
933 19.53 radiation 10.0 30 < th dose dependent rect. 2 21
936 19.54 atmosphere 995.0 720 > th dose independent rect. 17 2
940 19.54 humidity 50.0 10 > th dose independent rect. 6 11
959 19.55 precipitation 0.1 90 < th dose independent rect. 5 23
968 19.55 precipitation 0.1 90 < th dose dependent rect. 5 23
984 19.57 wind 3.0 720 < th dose independent rect. 2 1
987 19.57 temperature 15.0 720 > th dose independent rect. 19 5
988 19.57 temperature 10.0 720 > th dose independent rect. 24 5
989 19.57 temperature 30.0 720 < th dose independent rect. 24 5
990 19.57 humidity 50.0 720 > th dose independent rect. 24 5
993 19.57 atmosphere 995.0 720 > th dose independent rect. 24 5
994 19.57 radiation 1.0 720 < th dose independent rect. 24 5