BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0121300 Os02g0121300|AK061894
(172 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0121300 Cyclophilin 2 326 5e-90
Os09g0571400 Cyclophilin 1 239 5e-64
Os06g0708500 Similar to Cyclophilin 221 2e-58
AK062540 220 5e-58
Os10g0154700 Similar to Cyclophilin Dicyp-2 197 4e-51
Os05g0103200 Peptidyl-prolyl cis-trans isomerase, cyclophil... 193 4e-50
Os06g0216800 Similar to Cyclophilin-40 (Expressed protein) 192 1e-49
Os09g0537600 Similar to Cyclophilin-like protein (Single do... 191 3e-49
Os02g0761100 Similar to Cyclophilin-40 (Expressed protein) 186 7e-48
Os03g0811600 Similar to Peptidyl prolyl isomerase H 170 5e-43
Os08g0557500 Similar to Yarrowia lipolytica chromosome C of... 122 9e-29
Os08g0559400 Similar to Cyclophilin-like protein 114 5e-26
Os06g0130500 Similar to Cyclophilin-like protein PPIL3b 100 6e-22
Os01g0582400 Similar to Multidomain cyclophilin type peptid... 84 5e-17
Os02g0111200 72 2e-13
Os06g0670400 70 9e-13
Os06g0670500 Similar to Multidomain cyclophilin type peptid... 67 5e-12
>Os02g0121300 Cyclophilin 2
Length = 172
Score = 326 bits (836), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 160/172 (93%), Positives = 160/172 (93%)
Query: 1 MSNTRVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTF 60
MSNTRVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTF
Sbjct: 1 MSNTRVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTF 60
Query: 61 HRVIPEFMCQXXXXXXXXXXXXESIYGEKFADEVFKFKHDSPGILSMANAGPNTNGSQFF 120
HRVIPEFMCQ ESIYGEKFADEVFKFKHDSPGILSMANAGPNTNGSQFF
Sbjct: 61 HRVIPEFMCQGGDFTRGNGTGGESIYGEKFADEVFKFKHDSPGILSMANAGPNTNGSQFF 120
Query: 121 ICTVPCSWLDGKHVVFGRVVEGMDVVKAIEKVGSRGGSTAKPVVIADCGQLS 172
ICTVPCSWLDGKHVVFGRVVEGMDVVKAIEKVGSRGGSTAKPVVIADCGQLS
Sbjct: 121 ICTVPCSWLDGKHVVFGRVVEGMDVVKAIEKVGSRGGSTAKPVVIADCGQLS 172
>Os09g0571400 Cyclophilin 1
Length = 179
Score = 239 bits (611), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 112/170 (65%), Positives = 133/170 (78%)
Query: 3 NTRVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHR 62
N +VFFD+ +G A AGR+VMEL+A VP+TAENFR LCTGEKG+G SGKPLHYKGS FHR
Sbjct: 5 NPKVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHR 64
Query: 63 VIPEFMCQXXXXXXXXXXXXESIYGEKFADEVFKFKHDSPGILSMANAGPNTNGSQFFIC 122
+IP FMCQ ESIYG++FADE FK +H PG+LSMANAGPNTNGSQFFIC
Sbjct: 65 IIPNFMCQGGDFTRGNGTGGESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQFFIC 124
Query: 123 TVPCSWLDGKHVVFGRVVEGMDVVKAIEKVGSRGGSTAKPVVIADCGQLS 172
T +WLDGKHVVFG+VV+G VV+ +E+VGS G TA+ V+I DCGQL+
Sbjct: 125 TTRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQLA 174
>Os06g0708500 Similar to Cyclophilin
Length = 249
Score = 221 bits (563), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/167 (64%), Positives = 123/167 (73%)
Query: 5 RVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVI 64
+V+FD+ + G PAGR+VM L+ K VP+TAENFRALCTGEKG GKSGK LH+KGS FHR+I
Sbjct: 81 KVYFDVEIDGKPAGRVVMGLFGKTVPKTAENFRALCTGEKGTGKSGKALHFKGSAFHRII 140
Query: 65 PEFMCQXXXXXXXXXXXXESIYGEKFADEVFKFKHDSPGILSMANAGPNTNGSQFFICTV 124
P FM Q ESIYG KFADE FK KH PG+LSMANAG +TNGSQFFI TV
Sbjct: 141 PSFMIQGGDFTLGDGRGGESIYGTKFADENFKIKHTGPGLLSMANAGRDTNGSQFFITTV 200
Query: 125 PCSWLDGKHVVFGRVVEGMDVVKAIEKVGSRGGSTAKPVVIADCGQL 171
SWLDGKHVVFG+V+ GMDVV IE G + GS VVIAD G+L
Sbjct: 201 TTSWLDGKHVVFGKVLSGMDVVYKIEAEGQQSGSPKSKVVIADSGEL 247
>AK062540
Length = 206
Score = 220 bits (560), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 112/169 (66%), Positives = 130/169 (76%)
Query: 3 NTRVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHR 62
+VFFD+T+GG AGR+VM LY K VP+T ENFRALCTGEKG+GK GKPLHYKGSTFHR
Sbjct: 29 TNQVFFDITIGGKDAGRVVMGLYGKTVPKTVENFRALCTGEKGMGKKGKPLHYKGSTFHR 88
Query: 63 VIPEFMCQXXXXXXXXXXXXESIYGEKFADEVFKFKHDSPGILSMANAGPNTNGSQFFIC 122
+IP FM Q ESIYGEKF DE FK KH G+LSMANAG NTNGSQFFIC
Sbjct: 89 IIPNFMIQGGDFTDGNGMGGESIYGEKFEDENFKLKHTGEGVLSMANAGANTNGSQFFIC 148
Query: 123 TVPCSWLDGKHVVFGRVVEGMDVVKAIEKVGSRGGSTAKPVVIADCGQL 171
TV SWLDG+HVVFGRV+ GMD++KA+E VGS GG+ ++ VV+ D G+L
Sbjct: 149 TVKTSWLDGRHVVFGRVISGMDIIKAVEAVGSGGGTPSEQVVVKDSGEL 197
>Os10g0154700 Similar to Cyclophilin Dicyp-2
Length = 181
Score = 197 bits (500), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 101/174 (58%), Positives = 115/174 (66%), Gaps = 5/174 (2%)
Query: 2 SNTRVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKP-LHYKGSTF 60
SN RVF D+ +GG GR+V+EL A VP TAENFR LCTGE+ G+SGK LHYKGS F
Sbjct: 9 SNPRVFLDIAIGGEWVGRVVIELLADKVPDTAENFRRLCTGER-AGRSGKSRLHYKGSAF 67
Query: 61 HRVIPEFMCQXXXXXXXXXXXXESIY---GEKFADEVFKFKHDSPGILSMANAGPNTNGS 117
HRV+P FMCQ ES F DE F KHD PG++SMANAGPNTNGS
Sbjct: 68 HRVVPGFMCQGGDITAGNGTGGESALDGAARHFPDEGFAVKHDGPGVVSMANAGPNTNGS 127
Query: 118 QFFICTVPCSWLDGKHVVFGRVVEGMDVVKAIEKVGSRGGSTAKPVVIADCGQL 171
QFFI WLDG+HV FGRVV GM V+AI++ G+ G T KPVVI DCG L
Sbjct: 128 QFFITVDKAPWLDGRHVAFGRVVAGMGAVRAIDRTGTWSGKTVKPVVITDCGVL 181
>Os05g0103200 Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain
containing protein
Length = 250
Score = 193 bits (491), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 98/171 (57%), Positives = 119/171 (69%), Gaps = 11/171 (6%)
Query: 5 RVFFDMTVG---GAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFH 61
+V+FD+++G G GR+V+ LY DVP+TAENFRALCTGEKG G YKGS+FH
Sbjct: 84 KVYFDISIGNPVGKNVGRVVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSSFH 136
Query: 62 RVIPEFMCQXXXXXXXXXXXXESIYGEKFADEVFKFKHDSPGILSMANAGPNTNGSQFFI 121
RVI +FM Q +SIYG F DE FK H PG++SMANAGPNTNGSQFFI
Sbjct: 137 RVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLVHTGPGVVSMANAGPNTNGSQFFI 196
Query: 122 CTVPCSWLDGKHVVFGRVVEGMDVVKAIE-KVGSRGGSTAKPVVIADCGQL 171
CTV WLDG+HVVFG+V+EGMD+VK IE + RG K VVI++CG+L
Sbjct: 197 CTVKTPWLDGRHVVFGQVIEGMDIVKMIESQETDRGDRPKKKVVISECGEL 247
>Os06g0216800 Similar to Cyclophilin-40 (Expressed protein)
Length = 396
Score = 192 bits (487), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/172 (60%), Positives = 119/172 (69%), Gaps = 4/172 (2%)
Query: 3 NTRVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGK-SGKPLHYKGSTFH 61
N R F D+++GG GRIV+ELYA VPRTAENFRALCTGEKGVG +GK LHYKGS FH
Sbjct: 25 NPRCFMDVSIGGEIEGRIVIELYASVVPRTAENFRALCTGEKGVGAVTGKHLHYKGSCFH 84
Query: 62 RVIPEFMCQXXXXXXXXXXXXESIYGEKFADEVFKFKHDSPGILSMANAGPNTNGSQFFI 121
RVI FM Q ESIYG KF DE F KH+ G+LSMAN+GPNTNGSQFFI
Sbjct: 85 RVIKGFMVQGGDITAGDGTGGESIYGLKFEDENFVLKHERKGMLSMANSGPNTNGSQFFI 144
Query: 122 CTVPCSWLDGKHVVFGRVVEGMDVVKAIEK--VGSRGGSTAKPVVIADCGQL 171
T LDGKHVVFGRV++GM VV+++E VG T+ V I DCG+L
Sbjct: 145 TTTRTPHLDGKHVVFGRVIKGMGVVRSVEHAPVGEADRPTS-DVEIVDCGEL 195
>Os09g0537600 Similar to Cyclophilin-like protein (Single domain cyclophilin type
peptidyl- prolyl cis-trans isomerase)
Length = 215
Score = 191 bits (484), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 92/170 (54%), Positives = 114/170 (67%), Gaps = 1/170 (0%)
Query: 3 NTRVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHR 62
RV+ D+ + G GRIV+ LY VP+T NFRALCTGE+G+G GK LHYKGS FHR
Sbjct: 37 TNRVYLDVEIDGQHIGRIVIGLYGDVVPKTVANFRALCTGEEGIGHKGKSLHYKGSRFHR 96
Query: 63 VIPEFMCQXXXXXXXXXXXXESIYGEKFADEVFKFKHDSPGILSMANAGPNTNGSQFFIC 122
+IP FM Q ESIYG F DE F KH PG+++MAN+GP++NGSQF+I
Sbjct: 97 IIPGFMIQGGDIVRGDGKGSESIYGGTFPDENFIVKHTHPGVIAMANSGPDSNGSQFYIT 156
Query: 123 TVPCSWLDGKHVVFGRVVEGMDVVKAIE-KVGSRGGSTAKPVVIADCGQL 171
T+ SWLDG+HVVFGRV++GMD V AIE G+ G K VVI D G++
Sbjct: 157 TIKTSWLDGEHVVFGRVIQGMDYVYAIEGGAGTYNGKPRKKVVITDSGEI 206
>Os02g0761100 Similar to Cyclophilin-40 (Expressed protein)
Length = 403
Score = 186 bits (472), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 117/173 (67%), Gaps = 6/173 (3%)
Query: 3 NTRVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGV-GKSGKPLHYKGSTFH 61
N R + D+++GG GRIV+ELYA PRTAENFRALCTGEKGV +G PLHYKGS H
Sbjct: 32 NPRCYLDVSIGGDMEGRIVVELYASVAPRTAENFRALCTGEKGVSAATGVPLHYKGSCIH 91
Query: 62 RVIPEFMCQXXXXXXXXXXXXESIYGEKFADEVFKFKHDSPGILSMANAGPNTNGSQFFI 121
R++ FM Q ESIYG F DE F KH+ G+LSMANAGP+TNGSQFFI
Sbjct: 92 RIVKGFMVQGGDITAGDGTGGESIYGLNFEDENFVLKHERKGMLSMANAGPDTNGSQFFI 151
Query: 122 CTVPCSWLDGKHVVFGRVVEGMDVVKAIEKVGSRGGSTAKP---VVIADCGQL 171
T LDGKHVVFGRV++GM VV+++E V G + +P +VI DCG+L
Sbjct: 152 TTTRTPHLDGKHVVFGRVIKGMGVVRSMEHVSV--GESDRPITDIVIVDCGEL 202
>Os03g0811600 Similar to Peptidyl prolyl isomerase H
Length = 204
Score = 170 bits (430), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/173 (54%), Positives = 111/173 (64%), Gaps = 8/173 (4%)
Query: 3 NTRVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHR 62
N VFFD+T+G PAGRI MEL+A VP+TAENFR CTGE KSG P YKG FHR
Sbjct: 36 NPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHR--KSGLPQGYKGCQFHR 93
Query: 63 VIPEFMCQXXXXXXXXXXXXESIYGEKFADEVFKFKHDSPGILSMANAGPNTNGSQFFIC 122
VI +FM Q SIYG KF DE F KH PG+LSMAN+G N+NGSQFFI
Sbjct: 94 VIKDFMIQGGDYMKGDGTGCTSIYGTKFDDENFIAKHTGPGLLSMANSGVNSNGSQFFIT 153
Query: 123 TVPCSWLDGKHVVFGRVV-EGMDVVKAIEKVGSRGGSTAKP---VVIADCGQL 171
C WLD KHVVFGRV+ +GM V+ IE V + G +P VI++CG++
Sbjct: 154 CAKCEWLDNKHVVFGRVLGDGMLAVRKIENVAT--GPNNRPKLACVISECGEM 204
>Os08g0557500 Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of
Yarrowia lipolytica
Length = 154
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 83/138 (60%), Gaps = 12/138 (8%)
Query: 18 GRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQXXXXXXX 77
G I + LY ++ P+T ENF C ++G +Y FHRVI FM Q
Sbjct: 8 GDIHLRLYPEECPKTVENFTTHC-------RNG---YYDNLIFHRVIKGFMIQTGDPLGD 57
Query: 78 XXXXXESIYGEKFADEVFK-FKHDSPGILSMANAGPNTNGSQFFICTVPCSWLDGKHVVF 136
+SI+G +F DE K +HD P LSMANAGPNTNGSQFFI TV WLD KH VF
Sbjct: 58 GTGG-QSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVF 116
Query: 137 GRVVEGMDVVKAIEKVGS 154
GRVV+GMDVV+ IEKV +
Sbjct: 117 GRVVKGMDVVQQIEKVKT 134
>Os08g0559400 Similar to Cyclophilin-like protein
Length = 164
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 77/136 (56%), Gaps = 12/136 (8%)
Query: 18 GRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQXXXXXXX 77
G +E+Y K P+T NF L + +Y FHR+I +F+ Q
Sbjct: 19 GAFTIEMYYKHAPKTCRNFLELS----------RRGYYDNVIFHRIIKDFIVQGGDPTGT 68
Query: 78 XXXXXESIYGEKFADEVF-KFKHDSPGILSMANAGPNTNGSQFFICTVPCSWLDGKHVVF 136
ESIYG KF DE+ + KH GILSMANAGPNTNGSQFFI PC LDGKH +F
Sbjct: 69 GRGG-ESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHTIF 127
Query: 137 GRVVEGMDVVKAIEKV 152
GRV +GM++VK + V
Sbjct: 128 GRVSKGMEIVKRLGSV 143
>Os06g0130500 Similar to Cyclophilin-like protein PPIL3b
Length = 160
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 78/136 (57%), Gaps = 12/136 (8%)
Query: 18 GRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQXXXXXXX 77
G I E++ PRTAENF ALC SG +Y G+ FHR I FM Q
Sbjct: 10 GDIKCEVFCDQAPRTAENFLALCA-------SG---YYDGTIFHRNIKGFMIQGGDPTGT 59
Query: 78 XXXXXESIYGEKFADEVFK-FKHDSPGILSMANAGPNTNGSQFFICTVPCSWLDGKHVVF 136
SI+G+KFADE + KH++ G++SMAN+GPNTNGSQFFI L+G + VF
Sbjct: 60 GKGGT-SIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTVF 118
Query: 137 GRVVEGMDVVKAIEKV 152
+V+ G +V+ +EK
Sbjct: 119 AKVIHGFEVLDLMEKA 134
>Os01g0582400 Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans
isomerase
Length = 499
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 70/128 (54%), Gaps = 17/128 (13%)
Query: 17 AGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQXXXXXX 76
AG + +EL+ K+ P+ NF LC +G +Y G+ FHRVI F+ Q
Sbjct: 21 AGPLDIELWPKEAPKAVRNFVQLCL--EG--------YYDGTLFHRVIKSFLVQGGDPTG 70
Query: 77 XXXXXXESIYGEKFADEV---FKFKHDSPGILSMANAG-PNTNGSQFFICTVPCSWLDGK 132
ESIYG FADE +F H G+++ ANAG P++NGSQFFI C WLD K
Sbjct: 71 SGTGG-ESIYGAPFADEFHTRLRFNH--RGLVACANAGTPHSNGSQFFISLDRCDWLDKK 127
Query: 133 HVVFGRVV 140
+ +FG+V
Sbjct: 128 NTIFGKVT 135
>Os02g0111200
Length = 139
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 63/146 (43%), Gaps = 19/146 (13%)
Query: 22 MELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQXXXXXXXXXXX 81
MELYA VP TAENFRAL T KPLHYKG + P +
Sbjct: 1 MELYADLVPLTAENFRALYT--------KKPLHYKGLCLSQHYPRIHVEGRRLRQGPWHR 52
Query: 82 XESIYGEKFADEVFKFKHDSPGILSMANAGPNTNGSQFFICTVPCSWLDGKHVVFGRVVE 141
+E F HD P + N N SQFF VP W DG +VVFG ++
Sbjct: 53 RRVHLRRHLPNENFLLPHDRPW---LPNGSAENNISQFF-TRVP--WFDGNYVVFGCIIS 106
Query: 142 GMDVVKAIE-----KVGSRGGSTAKP 162
G +KAIE K+ +RG P
Sbjct: 107 GFHNLKAIEAEVEVKIANRGEVVIVP 132
>Os06g0670400
Length = 521
Score = 69.7 bits (169), Expect = 9e-13, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Query: 18 GRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQXXXXXXX 77
G I ++L+ P T +NF LC K +Y G FH++ +F+ Q
Sbjct: 10 GDIEVDLHTDMCPLTTKNFLKLC----------KMKYYNGCLFHKIEKDFLAQTGDSTGT 59
Query: 78 XX---XXXESIYGEK---FADEVF-KFKHDSPGILSMANAGPNTNGSQFFICTVP-CSWL 129
+ +YG++ F DE+ + +H G ++MA+AG N N SQF+I +L
Sbjct: 60 GAGGDSVYKFLYGDQARFFDDEIHPELRHSKMGTIAMASAGENCNASQFYITLRDGVDYL 119
Query: 130 DGKHVVFGRVVEGMDVVKAIEK 151
D KH VFG V EG D + I +
Sbjct: 120 DDKHTVFGMVAEGFDTITKINE 141
>Os06g0670500 Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans
isomerase
Length = 564
Score = 67.4 bits (163), Expect = 5e-12, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 18/142 (12%)
Query: 18 GRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQX---XXX 74
G I ++L+ P T +NF LC K +Y G FH+V +F+ Q
Sbjct: 10 GDIEVDLHTDMCPLTTKNFLKLC----------KMKYYNGCLFHKVEKDFLAQTGDPTGT 59
Query: 75 XXXXXXXXESIYGEK---FADEVF-KFKHDSPGILSMANAGPNTNGSQFFICTV-PCSWL 129
+ +YG++ F DE+ +H G ++MA+AG N N SQF+I +L
Sbjct: 60 GAGGDSVYKFLYGDQARFFDDEIRPDLRHSKKGTIAMASAGENCNASQFYITLRDDVDYL 119
Query: 130 DGKHVVFGRVVEGMDVVKAIEK 151
D KH VFG V EG D + I +
Sbjct: 120 DDKHTVFGMVAEGFDTLTKISE 141
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,940,905
Number of extensions: 233891
Number of successful extensions: 477
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 458
Number of HSP's successfully gapped: 17
Length of query: 172
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 78
Effective length of database: 12,127,685
Effective search space: 945959430
Effective search space used: 945959430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)