Os10g0154700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cyclophilin Dicyp-2.
FiT-DB / Search/ Help/ Sample detail
|
Os10g0154700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Cyclophilin Dicyp-2.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 528.47 | 1.08 | 11.3 | 0.668 | 2 | -1.61 | -2.62 | -3.52 | -0.249 | 11.4 | 21.3 | 748 | -- | -- |
| 563.13 | 1.11 | 11.3 | 1.51 | 2.06 | -1.38 | -1.59 | -- | -0.0707 | 11.5 | 21.4 | 645 | -- | -- |
| 554.3 | 1.1 | 11.3 | 0.751 | 2.02 | -1.54 | -- | -2.59 | -0.219 | 11.4 | 21.38 | 693 | -- | -- |
| 573.8 | 1.12 | 11.2 | 1.49 | 2.03 | -1.45 | -- | -- | -0.0591 | 11.4 | 21.22 | 730 | -- | -- |
| 793.2 | 1.31 | 11.3 | 1.03 | -- | -2.23 | -- | -2.57 | -0.0287 | -- | 21.3 | 837 | -- | -- |
| 633.15 | 1.18 | 11.3 | 1.03 | 2.25 | -- | -1.74 | -- | -0.441 | 11.2 | -- | -- | -- | -- |
| 645.99 | 1.19 | 11.3 | 0.961 | 2.27 | -- | -- | -- | -0.448 | 11.1 | -- | -- | -- | -- |
| 814.05 | 1.33 | 11.2 | 1.68 | -- | -2.07 | -- | -- | 0.101 | -- | 21.38 | 834 | -- | -- |
| 626.86 | 1.17 | 11.3 | -- | 2.1 | -1.09 | -- | -- | -0.196 | 11.3 | 21.3 | 645 | -- | -- |
| 966.37 | 1.45 | 11.4 | 0.907 | -- | -- | -- | -- | -0.468 | -- | -- | -- | -- | -- |
| 670.35 | 1.21 | 11.3 | -- | 2.26 | -- | -- | -- | -0.556 | 11.1 | -- | -- | -- | -- |
| 880.8 | 1.38 | 11.3 | -- | -- | -1.65 | -- | -- | -0.192 | -- | 21.4 | 808 | -- | -- |
| 988.09 | 1.47 | 11.4 | -- | -- | -- | -- | -- | -0.568 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 519.04 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 2 | 521.25 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 20 | 10 |
| 9 | 522.74 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 4 |
| 10 | 523.01 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 8 |
| 22 | 525.00 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 41 | 528.71 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 49 | 529.74 | wind | 3.0 | 14400 | < th | dose dependent | sin | 10 | NA |
| 52 | 530.10 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 57 | 530.50 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 15 |
| 61 | 530.66 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 10 |
| 64 | 530.75 | wind | 1.0 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 68 | 531.16 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 71 | 531.72 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 90 | 532.72 | wind | 1.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 98 | 533.33 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 111 | 533.79 | temperature | 25.0 | 720 | < th | dose dependent | sin | 8 | NA |
| 114 | 533.86 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 10 |
| 138 | 534.57 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 139 | 534.57 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 141 | 534.61 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 142 | 534.61 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 145 | 534.68 | temperature | 20.0 | 720 | > th | dose independent | rect. | 22 | 13 |
| 150 | 534.83 | temperature | 20.0 | 720 | < th | dose independent | rect. | 22 | 9 |
| 175 | 535.54 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 179 | 535.60 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 17 |
| 186 | 535.90 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 1 |
| 209 | 536.77 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 232 | 537.33 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 5 |
| 238 | 537.45 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 245 | 537.58 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 8 |
| 268 | 538.16 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 17 |
| 272 | 538.26 | temperature | 20.0 | 720 | > th | dose independent | rect. | 22 | 19 |
| 302 | 538.79 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 8 |
| 336 | 539.56 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 358 | 539.93 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 382 | 540.22 | wind | 1.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 405 | 540.52 | temperature | 20.0 | 720 | > th | dose independent | rect. | 22 | 17 |
| 420 | 540.78 | temperature | 20.0 | 720 | > th | dose independent | sin | 7 | NA |
| 438 | 541.10 | temperature | 20.0 | 720 | < th | dose independent | sin | 8 | NA |
| 446 | 541.23 | wind | 1.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 454 | 541.33 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 638 | 543.61 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 679 | 544.07 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 728 | 544.67 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 773 | 545.08 | wind | 1.0 | 14400 | < th | dose independent | rect. | 9 | 22 |
| 793 | 545.30 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 21 |
| 816 | 545.53 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 827 | 545.69 | wind | 1.0 | 14400 | > th | dose independent | rect. | 9 | 22 |
| 843 | 545.82 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 5 |
| 914 | 546.49 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 22 |
| 949 | 546.84 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 9 | 22 |
| 971 | 547.00 | wind | 1.0 | 14400 | > th | dose independent | rect. | 3 | 9 |
| 973 | 547.03 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 22 |
| 976 | 547.06 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 17 |