Os08g0559400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cyclophilin-like protein.
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Os08g0559400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cyclophilin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.48 | 0.368 | 12.1 | -1.28 | 0.573 | 0.742 | -0.268 | -1.63 | -0.295 | 4.15 | 19.49 | 2003 | -- | -- |
| 64.52 | 0.374 | 12.1 | -1.16 | 0.546 | 1.12 | -0.241 | -- | -0.278 | 4 | 19.1 | 2829 | -- | -- |
| 61.67 | 0.366 | 12.1 | -1.28 | 0.572 | 0.739 | -- | -1.62 | -0.295 | 4.15 | 19.4 | 2024 | -- | -- |
| 64.46 | 0.374 | 12.1 | -1.16 | 0.531 | 1.15 | -- | -- | -0.275 | 3.97 | 19.08 | 2815 | -- | -- |
| 76.56 | 0.408 | 12.1 | -1.37 | -- | 0.781 | -- | -1.49 | -0.342 | -- | 20.2 | 2599 | -- | -- |
| 85.2 | 0.433 | 12 | -0.592 | 0.576 | -- | -0.291 | -- | -0.0395 | 3.95 | -- | -- | -- | -- |
| 85.44 | 0.433 | 12 | -0.589 | 0.574 | -- | -- | -- | -0.0379 | 3.94 | -- | -- | -- | -- |
| 79.35 | 0.415 | 12.1 | -1.16 | -- | 1.23 | -- | -- | -0.271 | -- | 18.95 | 2700 | -- | -- |
| 86.36 | 0.435 | 12 | -- | 0.633 | 0.509 | -- | -- | -0.0279 | 3.52 | 19.08 | 2815 | -- | -- |
| 103.5 | 0.475 | 12 | -0.565 | -- | -- | -- | -- | -0.0225 | -- | -- | -- | -- | -- |
| 94.58 | 0.455 | 12 | -- | 0.563 | -- | -- | -- | 0.0277 | 3.96 | -- | -- | -- | -- |
| 104.86 | 0.477 | 12 | -- | -- | 0.542 | -- | -- | -0.0465 | -- | 19.39 | 2540 | -- | -- |
| 111.93 | 0.494 | 12 | -- | -- | -- | -- | -- | 0.0402 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.56 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 2 | 60.58 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 3 | 60.61 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 19 | 61.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 21 | 61.28 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 22 | 61.30 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 26 | 61.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 30 | 61.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 16 |
| 32 | 61.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 11 |
| 45 | 61.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 50 | 61.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 54 | 61.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 57 | 61.46 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 58 | 61.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 126 | 61.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 20 |
| 162 | 61.77 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 165 | 61.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 167 | 61.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 184 | 61.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 9 |
| 187 | 61.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 219 | 61.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 226 | 61.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 9 |
| 250 | 61.96 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 20 |
| 258 | 61.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 273 | 62.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 14 |
| 340 | 62.09 | humidity | 90 | 14400 | > th | dose dependent | sin | 4 | NA |
| 415 | 62.20 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 418 | 62.20 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 22 |
| 461 | 62.27 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 8 |
| 475 | 62.29 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 520 | 62.33 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 526 | 62.33 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 16 |
| 577 | 62.38 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 13 |
| 588 | 62.39 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 666 | 62.47 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 5 |
| 724 | 62.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 738 | 62.54 | humidity | 90 | 14400 | > th | dose dependent | sin | 14 | NA |
| 776 | 62.57 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 793 | 62.59 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 900 | 62.68 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 8 |
| 963 | 62.75 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |