BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0559400 Os08g0559400|AB067654
(164 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0559400 Similar to Cyclophilin-like protein 315 9e-87
Os08g0557500 Similar to Yarrowia lipolytica chromosome C of... 156 5e-39
Os06g0130500 Similar to Cyclophilin-like protein PPIL3b 143 5e-35
Os01g0582400 Similar to Multidomain cyclophilin type peptid... 134 3e-32
Os05g0103200 Peptidyl-prolyl cis-trans isomerase, cyclophil... 117 3e-27
Os02g0761100 Similar to Cyclophilin-40 (Expressed protein) 115 2e-26
Os06g0216800 Similar to Cyclophilin-40 (Expressed protein) 115 2e-26
Os02g0121300 Cyclophilin 2 114 4e-26
Os06g0670400 112 9e-26
Os06g0670500 Similar to Multidomain cyclophilin type peptid... 111 2e-25
AK062540 107 4e-24
Os03g0811600 Similar to Peptidyl prolyl isomerase H 104 3e-23
Os09g0571400 Cyclophilin 1 99 2e-21
Os06g0708500 Similar to Cyclophilin 99 2e-21
Os09g0537600 Similar to Cyclophilin-like protein (Single do... 87 4e-18
Os10g0154700 Similar to Cyclophilin Dicyp-2 86 2e-17
Os07g0476500 Peptidyl-prolyl cis-trans isomerase, cyclophil... 73 1e-13
>Os08g0559400 Similar to Cyclophilin-like protein
Length = 164
Score = 315 bits (807), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 153/164 (93%), Positives = 153/164 (93%)
Query: 1 MWGSADGGTPEVTLETSMGAFTIEMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIV 60
MWGSADGGTPEVTLETSMGAFTIEMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIV
Sbjct: 1 MWGSADGGTPEVTLETSMGAFTIEMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIV 60
Query: 61 QXXXXXXXXXXXESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSL 120
Q ESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSL
Sbjct: 61 QGGDPTGTGRGGESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSL 120
Query: 121 DGKHTIFGRVSKGMEIVKRLGSVQTDKSDRPIHEVKILRTVVKD 164
DGKHTIFGRVSKGMEIVKRLGSVQTDKSDRPIHEVKILRTVVKD
Sbjct: 121 DGKHTIFGRVSKGMEIVKRLGSVQTDKSDRPIHEVKILRTVVKD 164
>Os08g0557500 Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of
Yarrowia lipolytica
Length = 154
Score = 156 bits (395), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 75/151 (49%), Positives = 98/151 (64%)
Query: 12 VTLETSMGAFTIEMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIVQXXXXXXXXXX 71
+ + TSMG + +Y + PKT NF R GYYDN+IFHR+IK F++Q
Sbjct: 1 MVMHTSMGDIHLRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTG 60
Query: 72 XESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHTIFGRVS 131
+SI+G +FEDE L+H LSMANAGPNTNGSQFFIT LD KHT+FGRV
Sbjct: 61 GQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVV 120
Query: 132 KGMEIVKRLGSVQTDKSDRPIHEVKILRTVV 162
KGM++V+++ V+TDK+D+P +VKIL V
Sbjct: 121 KGMDVVQQIEKVKTDKNDKPYQDVKILNVTV 151
>Os06g0130500 Similar to Cyclophilin-like protein PPIL3b
Length = 160
Score = 143 bits (361), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 91/151 (60%)
Query: 12 VTLETSMGAFTIEMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIVQXXXXXXXXXX 71
VTL T++G E++ AP+T NFL L GYYD IFHR IK F++Q
Sbjct: 3 VTLHTNLGDIKCEVFCDQAPRTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKG 62
Query: 72 XESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHTIFGRVS 131
SI+G KF DE R LKH G++SMAN+GPNTNGSQFFIT A L+G +T+F +V
Sbjct: 63 GTSIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTVFAKVI 122
Query: 132 KGMEIVKRLGSVQTDKSDRPIHEVKILRTVV 162
G E++ + QT DRP+ E+++ R +
Sbjct: 123 HGFEVLDLMEKAQTGPGDRPLAEIRLNRVTI 153
>Os01g0582400 Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans
isomerase
Length = 499
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 96/155 (61%), Gaps = 4/155 (2%)
Query: 11 EVTLETSMGAFTIEMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIVQXXXXXXXXX 70
+V ++T+ G IE++ K APK RNF++L GYYD +FHR+IK F+VQ
Sbjct: 14 KVVVQTTAGPLDIELWPKEAPKAVRNFVQLCLEGYYDGTLFHRVIKSFLVQGGDPTGSGT 73
Query: 71 XXESIYGAKFEDEIRPELKHTGAGILSMANAG-PNTNGSQFFITLAPCQSLDGKHTIFGR 129
ESIYGA F DE L+ G+++ ANAG P++NGSQFFI+L C LD K+TIFG+
Sbjct: 74 GGESIYGAPFADEFHTRLRFNHRGLVACANAGTPHSNGSQFFISLDRCDWLDKKNTIFGK 133
Query: 130 VSKGMEIVK--RLGSVQTDKSDRPIHEVKILRTVV 162
V+ G I L ++TDK DRP++ KIL V
Sbjct: 134 VT-GDSIFNLLALADIETDKDDRPVYPQKILSVEV 167
>Os05g0103200 Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain
containing protein
Length = 250
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 89/145 (61%), Gaps = 5/145 (3%)
Query: 17 SMGAFTIEMYYKHAPKTCRNFLEL--SRRGY-YDNVIFHRIIKDFIVQXXX-XXXXXXXX 72
++G I +Y P+T NF L +G+ Y FHR+IKDF++Q
Sbjct: 98 NVGRVVIGLYGDDVPQTAENFRALCTGEKGFGYKGSSFHRVIKDFMIQGGDFDKGNGTGG 157
Query: 73 ESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHTIFGRVSK 132
+SIYG F+DE +L HTG G++SMANAGPNTNGSQFFI LDG+H +FG+V +
Sbjct: 158 KSIYGRTFKDE-NFKLVHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDGRHVVFGQVIE 216
Query: 133 GMEIVKRLGSVQTDKSDRPIHEVKI 157
GM+IVK + S +TD+ DRP +V I
Sbjct: 217 GMDIVKMIESQETDRGDRPKKKVVI 241
>Os02g0761100 Similar to Cyclophilin-40 (Expressed protein)
Length = 403
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 90/167 (53%), Gaps = 18/167 (10%)
Query: 9 TPEVTLETSMGA-----FTIEMYYKHAPKTCRNFLEL--SRRG---------YYDNVIFH 52
P L+ S+G +E+Y AP+T NF L +G +Y H
Sbjct: 32 NPRCYLDVSIGGDMEGRIVVELYASVAPRTAENFRALCTGEKGVSAATGVPLHYKGSCIH 91
Query: 53 RIIKDFIVQXXX-XXXXXXXXESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFF 111
RI+K F+VQ ESIYG FEDE LKH G+LSMANAGP+TNGSQFF
Sbjct: 92 RIVKGFMVQGGDITAGDGTGGESIYGLNFEDE-NFVLKHERKGMLSMANAGPDTNGSQFF 150
Query: 112 ITLAPCQSLDGKHTIFGRVSKGMEIVKRLGSVQTDKSDRPIHEVKIL 158
IT LDGKH +FGRV KGM +V+ + V +SDRPI ++ I+
Sbjct: 151 ITTTRTPHLDGKHVVFGRVIKGMGVVRSMEHVSVGESDRPITDIVIV 197
>Os06g0216800 Similar to Cyclophilin-40 (Expressed protein)
Length = 396
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 89/167 (53%), Gaps = 18/167 (10%)
Query: 9 TPEVTLETSMGA-----FTIEMYYKHAPKTCRNFLEL-----------SRRGYYDNVIFH 52
P ++ S+G IE+Y P+T NF L + +Y FH
Sbjct: 25 NPRCFMDVSIGGEIEGRIVIELYASVVPRTAENFRALCTGEKGVGAVTGKHLHYKGSCFH 84
Query: 53 RIIKDFIVQXXX-XXXXXXXXESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFF 111
R+IK F+VQ ESIYG KFEDE LKH G+LSMAN+GPNTNGSQFF
Sbjct: 85 RVIKGFMVQGGDITAGDGTGGESIYGLKFEDE-NFVLKHERKGMLSMANSGPNTNGSQFF 143
Query: 112 ITLAPCQSLDGKHTIFGRVSKGMEIVKRLGSVQTDKSDRPIHEVKIL 158
IT LDGKH +FGRV KGM +V+ + ++DRP +V+I+
Sbjct: 144 ITTTRTPHLDGKHVVFGRVIKGMGVVRSVEHAPVGEADRPTSDVEIV 190
>Os02g0121300 Cyclophilin 2
Length = 172
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 77/133 (57%), Gaps = 12/133 (9%)
Query: 19 GAFTIEMYYKHAPKTCRNFLEL--SRRG--------YYDNVIFHRIIKDFIVQXXX-XXX 67
G +E+Y K P+T NF L +G +Y FHR+I +F+ Q
Sbjct: 18 GRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRG 77
Query: 68 XXXXXESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHTIF 127
ESIYG KF DE+ + KH GILSMANAGPNTNGSQFFI PC LDGKH +F
Sbjct: 78 NGTGGESIYGEKFADEVF-KFKHDSPGILSMANAGPNTNGSQFFICTVPCSWLDGKHVVF 136
Query: 128 GRVSKGMEIVKRL 140
GRV +GM++VK +
Sbjct: 137 GRVVEGMDVVKAI 149
>Os06g0670400
Length = 521
Score = 112 bits (281), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 90/161 (55%), Gaps = 8/161 (4%)
Query: 12 VTLETSMGAFTIEMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIVQXXXXXXXXXX 71
V + TS+G ++++ P T +NFL+L + YY+ +FH+I KDF+ Q
Sbjct: 3 VLIVTSVGDIEVDLHTDMCPLTTKNFLKLCKMKYYNGCLFHKIEKDFLAQTGDSTGTGAG 62
Query: 72 XESIY-------GAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAP-CQSLDGK 123
+S+Y F+DEI PEL+H+ G ++MA+AG N N SQF+ITL LD K
Sbjct: 63 GDSVYKFLYGDQARFFDDEIHPELRHSKMGTIAMASAGENCNASQFYITLRDGVDYLDDK 122
Query: 124 HTIFGRVSKGMEIVKRLGSVQTDKSDRPIHEVKILRTVVKD 164
HT+FG V++G + + ++ D RP +++I T V D
Sbjct: 123 HTVFGMVAEGFDTITKINETYVDDKGRPFKDIRIRHTYVLD 163
>Os06g0670500 Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans
isomerase
Length = 564
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 8/161 (4%)
Query: 12 VTLETSMGAFTIEMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIVQXXXXXXXXXX 71
V + TS+G ++++ P T +NFL+L + YY+ +FH++ KDF+ Q
Sbjct: 3 VLIVTSVGDIEVDLHTDMCPLTTKNFLKLCKMKYYNGCLFHKVEKDFLAQTGDPTGTGAG 62
Query: 72 XESI----YGAK---FEDEIRPELKHTGAGILSMANAGPNTNGSQFFITL-APCQSLDGK 123
+S+ YG + F+DEIRP+L+H+ G ++MA+AG N N SQF+ITL LD K
Sbjct: 63 GDSVYKFLYGDQARFFDDEIRPDLRHSKKGTIAMASAGENCNASQFYITLRDDVDYLDDK 122
Query: 124 HTIFGRVSKGMEIVKRLGSVQTDKSDRPIHEVKILRTVVKD 164
HT+FG V++G + + ++ D RP +++I T V D
Sbjct: 123 HTVFGMVAEGFDTLTKISETYVDDKGRPFKDIRIKHTYVLD 163
>AK062540
Length = 206
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 19 GAFTIEMYYKHAPKTCRNFLELSRRG----------YYDNVIFHRIIKDFIVQXXX-XXX 67
G + +Y K PKT NF L +Y FHRII +F++Q
Sbjct: 44 GRVVMGLYGKTVPKTVENFRALCTGEKGMGKKGKPLHYKGSTFHRIIPNFMIQGGDFTDG 103
Query: 68 XXXXXESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHTIF 127
ESIYG KFEDE +LKHTG G+LSMANAG NTNGSQFFI LDG+H +F
Sbjct: 104 NGMGGESIYGEKFEDE-NFKLKHTGEGVLSMANAGANTNGSQFFICTVKTSWLDGRHVVF 162
Query: 128 GRVSKGMEIVKRLGSV 143
GRV GM+I+K + +V
Sbjct: 163 GRVISGMDIIKAVEAV 178
>Os03g0811600 Similar to Peptidyl prolyl isomerase H
Length = 204
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 19 GAFTIEMYYKHAPKTCRNFLELSRRGY--------YDNVIFHRIIKDFIVQXXX-XXXXX 69
G +E++ PKT NF + + Y FHR+IKDF++Q
Sbjct: 51 GRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFHRVIKDFMIQGGDYMKGDG 110
Query: 70 XXXESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHTIFGR 129
SIYG KF+DE KHTG G+LSMAN+G N+NGSQFFIT A C+ LD KH +FGR
Sbjct: 111 TGCTSIYGTKFDDE-NFIAKHTGPGLLSMANSGVNSNGSQFFITCAKCEWLDNKHVVFGR 169
Query: 130 V-SKGMEIVKRLGSVQTDKSDRP 151
V GM V+++ +V T ++RP
Sbjct: 170 VLGDGMLAVRKIENVATGPNNRP 192
>Os09g0571400 Cyclophilin 1
Length = 179
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 75/136 (55%), Gaps = 12/136 (8%)
Query: 19 GAFTIEMYYKHAPKTCRNF--LELSRRG--------YYDNVIFHRIIKDFIVQXXX-XXX 67
G +E++ PKT NF L +G +Y FHRII +F+ Q
Sbjct: 20 GRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRIIPNFMCQGGDFTRG 79
Query: 68 XXXXXESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHTIF 127
ESIYG +F DE +L+HTG G+LSMANAGPNTNGSQFFI LDGKH +F
Sbjct: 80 NGTGGESIYGDRFADE-NFKLRHTGPGVLSMANAGPNTNGSQFFICTTRTTWLDGKHVVF 138
Query: 128 GRVSKGMEIVKRLGSV 143
G+V G +V+++ V
Sbjct: 139 GKVVDGYTVVEKMEQV 154
>Os06g0708500 Similar to Cyclophilin
Length = 249
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 81/150 (54%), Gaps = 13/150 (8%)
Query: 19 GAFTIEMYYKHAPKTCRNFLEL----------SRRGYYDNVIFHRIIKDFIVQXXX-XXX 67
G + ++ K PKT NF L + ++ FHRII F++Q
Sbjct: 94 GRVVMGLFGKTVPKTAENFRALCTGEKGTGKSGKALHFKGSAFHRIIPSFMIQGGDFTLG 153
Query: 68 XXXXXESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHTIF 127
ESIYG KF DE ++KHTG G+LSMANAG +TNGSQFFIT LDGKH +F
Sbjct: 154 DGRGGESIYGTKFADE-NFKIKHTGPGLLSMANAGRDTNGSQFFITTVTTSWLDGKHVVF 212
Query: 128 GRVSKGMEIVKRLGSVQTDKSDRPIHEVKI 157
G+V GM++V ++ + +S P +V I
Sbjct: 213 GKVLSGMDVVYKI-EAEGQQSGSPKSKVVI 241
>Os09g0537600 Similar to Cyclophilin-like protein (Single domain cyclophilin type
peptidyl- prolyl cis-trans isomerase)
Length = 215
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 18 MGAFTIEMYYKHAPKTCRNFLEL----------SRRGYYDNVIFHRIIKDFIVQXXXXXX 67
+G I +Y PKT NF L + +Y FHRII F++Q
Sbjct: 51 IGRIVIGLYGDVVPKTVANFRALCTGEEGIGHKGKSLHYKGSRFHRIIPGFMIQGGDIVR 110
Query: 68 X-XXXXESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHTI 126
ESIYG F DE +KHT G+++MAN+GP++NGSQF+IT LDG+H +
Sbjct: 111 GDGKGSESIYGGTFPDE-NFIVKHTHPGVIAMANSGPDSNGSQFYITTIKTSWLDGEHVV 169
Query: 127 FGRVSKGMEIV 137
FGRV +GM+ V
Sbjct: 170 FGRVIQGMDYV 180
>Os10g0154700 Similar to Cyclophilin Dicyp-2
Length = 181
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 78/165 (47%), Gaps = 22/165 (13%)
Query: 9 TPEVTLETSMGA-----FTIEMYYKHAPKTCRNFLELS----------RRGYYDNVIFHR 53
P V L+ ++G IE+ P T NF L R +Y FHR
Sbjct: 10 NPRVFLDIAIGGEWVGRVVIELLADKVPDTAENFRRLCTGERAGRSGKSRLHYKGSAFHR 69
Query: 54 IIKDFIVQXX--XXXXXXXXXESIYGAK--FEDEIRPELKHTGAGILSMANAGPNTNGSQ 109
++ F+ Q ++ GA F DE +KH G G++SMANAGPNTNGSQ
Sbjct: 70 VVPGFMCQGGDITAGNGTGGESALDGAARHFPDEGF-AVKHDGPGVVSMANAGPNTNGSQ 128
Query: 110 FFITLAPCQSLDGKHTIFGRVSKGMEIVKRLGSVQT--DKSDRPI 152
FFIT+ LDG+H FGRV GM V+ + T K+ +P+
Sbjct: 129 FFITVDKAPWLDGRHVAFGRVVAGMGAVRAIDRTGTWSGKTVKPV 173
>Os07g0476500 Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain
containing protein
Length = 235
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 2/150 (1%)
Query: 14 LETSMGAFTIEMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIVQXXXXXXXXXXXE 73
++T+ G+ TIE+Y + F+ L + ++ + F +IK+F++Q E
Sbjct: 83 IDTAKGSITIEIYKDASADVVDRFVSLCKSNHFKGMPFRHVIKNFVIQGGDFDFNGAAQE 142
Query: 74 SIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHTIFGRVSKG 133
I AK E KH I + N PN G FIT AP L+ K +FG+V G
Sbjct: 143 WILKAKASGENALSPKHEAFMIGTTKN--PNNKGFDLFITTAPIPDLNDKLVVFGQVING 200
Query: 134 MEIVKRLGSVQTDKSDRPIHEVKILRTVVK 163
+IV+ + V TD+ +P + IL +K
Sbjct: 201 QDIVQEIEEVDTDEHYQPKTPIGILNITLK 230
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,227,798
Number of extensions: 185786
Number of successful extensions: 328
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 17
Length of query: 164
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 71
Effective length of database: 12,179,899
Effective search space: 864772829
Effective search space used: 864772829
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)