Os06g0708500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cyclophilin.
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Os06g0708500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cyclophilin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.53 | 0.324 | 13.5 | 0.137 | 0.676 | 0.722 | 0.196 | -1.84 | 0.273 | 21.6 | 19.4 | 2117 | -- | -- |
| 50.4 | 0.331 | 13.4 | 0.283 | 0.708 | 1.33 | 0.0837 | -- | 0.312 | 21.3 | 18.43 | 2677 | -- | -- |
| 47.66 | 0.322 | 13.5 | 0.136 | 0.676 | 0.719 | -- | -1.82 | 0.277 | 21.7 | 19.4 | 2104 | -- | -- |
| 50.41 | 0.331 | 13.4 | 0.283 | 0.706 | 1.32 | -- | -- | 0.314 | 21.3 | 18.5 | 2664 | -- | -- |
| 73.87 | 0.4 | 13.5 | 0.118 | -- | 0.8 | -- | -1.67 | 0.277 | -- | 19.2 | 2274 | -- | -- |
| 74.12 | 0.404 | 13.4 | 0.887 | 0.713 | -- | 0.0558 | -- | 0.549 | 21.7 | -- | -- | -- | -- |
| 74.14 | 0.403 | 13.4 | 0.885 | 0.712 | -- | -- | -- | 0.549 | 21.7 | -- | -- | -- | -- |
| 75.4 | 0.404 | 13.4 | 0.279 | -- | 1.46 | -- | -- | 0.307 | -- | 18.39 | 2236 | -- | -- |
| 51.98 | 0.336 | 13.5 | -- | 0.727 | 1.46 | -- | -- | 0.267 | 21.3 | 18.4 | 2683 | -- | -- |
| 104.33 | 0.477 | 13.4 | 0.891 | -- | -- | -- | -- | 0.548 | -- | -- | -- | -- | -- |
| 94.77 | 0.455 | 13.4 | -- | 0.715 | -- | -- | -- | 0.451 | 21.8 | -- | -- | -- | -- |
| 76.92 | 0.408 | 13.4 | -- | -- | 1.51 | -- | -- | 0.282 | -- | 18.5 | 2256 | -- | -- |
| 125.29 | 0.522 | 13.4 | -- | -- | -- | -- | -- | 0.45 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.97 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 2 | 45.31 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 17 |
| 7 | 45.45 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 19 | 45.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 22 | 45.72 | humidity | 90 | 14400 | > th | dose dependent | sin | 4 | NA |
| 48 | 46.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 53 | 46.20 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 56 | 46.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 63 | 46.33 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 16 |
| 120 | 46.92 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 143 | 47.12 | humidity | 90 | 14400 | > th | dose independent | sin | 7 | NA |
| 148 | 47.15 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 12 |
| 156 | 47.20 | humidity | 90 | 14400 | > th | dose dependent | rect. | 11 | 20 |
| 157 | 47.21 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 158 | 47.21 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 16 |
| 234 | 47.54 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 258 | 47.66 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 316 | 47.82 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 317 | 47.83 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 322 | 47.85 | humidity | 90 | 14400 | < th | dose independent | sin | 7 | NA |
| 351 | 47.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 11 |
| 367 | 48.02 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 368 | 48.03 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 374 | 48.05 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 378 | 48.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 391 | 48.10 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 19 |
| 406 | 48.15 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 462 | 48.34 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 467 | 48.36 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 590 | 48.67 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 621 | 48.74 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 647 | 48.78 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 830 | 49.15 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 18 |
| 850 | 49.18 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 872 | 49.23 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 972 | 49.41 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 990 | 49.45 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 23 |